genome.fa.s14.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  44  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12964421--12964646	85	2.6	86	82	4	262	31	18	16	33	1.94
12964390--12964646	43	6.0	42	78	5	207	30	19	17	32	1.95
12970879--12971031	49	3.1	49	82	3	191	32	13	18	35	1.90
12971231--12971344	24	4.9	24	85	8	146	37	3	7	50	1.49
12971243--12971286	14	3.4	14	76	23	60	38	0	9	52	1.33
12971251--12971319	21	3.1	21	89	6	93	36	5	8	49	1.58
12973613--12973678	24	2.8	24	81	4	80	39	4	7	48	1.52
12973620--12973681	24	2.6	24	89	0	97	41	4	6	46	1.51
12973620--12973689	24	2.9	24	82	4	88	40	5	7	47	1.55
12974646--12974843	99	2.0	100	96	1	371	32	13	18	35	1.89
12975048--12975080	14	2.4	14	94	0	57	27	6	21	45	1.75
12976574--12976621	20	2.4	21	82	6	64	50	0	0	50	1.00
12981456--12981650	98	2.0	98	95	0	354	36	25	10	27	1.89
12981814--12981863	26	2.0	26	88	4	75	56	4	8	32	1.47
12982616--12982744	19	6.7	19	91	3	213	37	14	10	37	1.82
12982616--12982743	59	2.2	59	92	2	215	37	14	10	37	1.81
12982902--12982959	22	2.6	22	81	7	64	41	17	5	36	1.72
12983213--12983330	45	2.7	44	83	9	159	26	27	20	26	1.99
12983305--12983804	84	5.9	85	73	13	341	30	22	19	27	1.98
12983208--12983804	44	13.9	44	73	14	405	29	22	18	28	1.98
12983302--12983797	128	3.9	128	98	0	929	30	22	18	28	1.98
12983774--12984177	132	3.1	132	97	0	745	24	27	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12983881--12984066	44	4.2	44	67	10	137	24	26	22	27	2.00
12983774--12984103	44	7.5	44	66	13	131	24	27	20	27	1.99
12985436--12985479	8	5.8	8	84	10	65	2	0	9	88	0.59
12985437--12985479	22	2.0	22	95	0	77	2	0	9	88	0.60
12991010--12991141	19	6.8	19	91	3	219	36	15	10	37	1.82
12991003--12991140	59	2.4	59	91	4	221	36	14	10	38	1.80
12992110--12992144	18	1.9	18	94	0	61	71	8	11	8	1.31
12996230--12996276	20	2.3	21	77	7	51	29	23	6	40	1.79
13002553--13002645	27	3.4	27	82	7	116	24	22	9	43	1.83
13004734--13004802	21	3.4	20	82	11	63	33	24	15	26	1.95
13015267--13015303	9	4.1	9	85	0	56	43	13	10	32	1.79
13015362--13015420	30	2.0	30	86	6	84	18	50	0	30	1.47
13016457--13016515	22	2.7	23	84	7	77	25	30	0	44	1.55
13022885--13022931	22	2.2	22	78	17	55	61	2	6	29	1.32
13024586--13024620	16	2.2	16	89	0	52	60	2	0	37	1.12
13024842--13024878	10	3.7	10	85	0	56	29	0	0	70	0.88
13025535--13025599	16	3.6	18	74	17	62	52	0	0	47	1.00
13025541--13025597	18	3.5	15	82	17	69	50	0	0	49	1.00
13025684--13025722	12	3.2	13	82	10	55	48	0	0	51	1.00
13036445--13036485	18	2.3	19	87	8	59	2	4	31	60	1.30
13037104--13037141	17	2.2	17	95	0	67	36	0	0	63	0.95
13042288--13042411	64	1.9	64	85	3	169	20	21	22	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13042387--13042443	25	2.3	25	85	8	80	19	21	21	38	1.93
13044549--13044630	34	2.2	38	81	18	127	42	20	9	26	1.83
13044556--13044626	34	2.1	34	100	0	142	40	22	8	28	1.83
13052797--13052884	23	3.9	22	78	11	97	37	21	21	19	1.94
13052803--13052883	22	3.5	22	77	14	76	37	22	22	18	1.95
13066270--13066338	35	2.0	35	97	0	129	36	4	13	46	1.62
13066978--13067028	26	2.0	25	88	3	75	64	5	3	25	1.33
13068078--13068148	23	3.1	23	93	0	124	32	15	2	49	1.59
13068184--13068213	13	2.3	13	94	0	51	43	10	0	46	1.37
13069082--13069203	40	3.0	39	76	12	120	22	23	20	32	1.98
13077198--13077272	37	2.0	37	94	0	132	42	6	17	33	1.75
13080088--13080136	20	2.3	20	86	6	62	38	16	16	28	1.90
13082320--13082402	44	1.9	43	90	2	130	26	21	2	49	1.62
13110400--13110580	63	2.9	64	80	4	208	27	7	29	34	1.85
13114795--13114923	66	2.0	66	95	0	231	29	3	20	45	1.69
13115242--13115325	23	3.7	23	80	0	96	20	17	26	35	1.95
13116437--13116500	25	2.7	23	77	15	58	45	0	0	54	0.99
13116440--13116489	18	2.6	19	77	22	52	48	0	0	52	1.00
13116455--13116514	24	2.4	25	76	13	70	43	0	0	56	0.99
13116498--13116539	13	2.9	14	80	13	50	54	0	0	45	0.99
13116502--13116538	16	2.3	16	86	13	58	59	0	0	40	0.97
13116551--13116592	14	2.9	15	79	10	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13116556--13116623	15	4.4	15	72	22	52	52	2	0	44	1.16
13123848--13124306	119	3.9	115	77	8	415	39	17	12	30	1.87
13123848--13124296	238	1.9	236	80	7	527	39	17	12	30	1.87
13128165--13128206	13	3.2	13	90	6	66	19	0	0	80	0.70
13128165--13128205	7	5.9	7	91	8	66	17	0	0	82	0.66
13128620--13128675	24	2.5	23	83	11	71	5	21	1	71	1.15
13129695--13129770	10	7.9	10	80	5	86	34	0	7	57	1.28
13129683--13129770	19	4.7	18	78	13	72	35	0	9	55	1.32
13129825--13129903	10	8.1	9	76	14	68	32	0	0	67	0.91
13129827--13129893	20	3.3	21	89	8	104	34	0	0	65	0.93
13129825--13129905	20	4.2	19	86	7	94	33	0	0	66	0.92
13129841--13129904	9	6.8	9	78	15	67	32	0	0	67	0.91
13129842--13129913	29	2.4	29	86	13	94	31	0	0	68	0.90
13129824--13129929	10	10.3	11	72	20	63	33	0	0	65	1.00
13130818--13131044	118	1.9	118	97	0	427	44	17	8	30	1.78
13131882--13131971	47	1.9	47	95	0	162	37	2	38	21	1.66
13132396--13132423	3	9.3	3	100	0	56	67	0	0	32	0.91
13132549--13132573	7	3.6	7	100	0	50	84	0	0	16	0.63
13133993--13134072	29	2.7	30	79	9	103	33	6	1	58	1.31
13136721--13136797	38	2.0	38	92	0	127	29	2	38	28	1.70
13139498--13139855	46	8.3	45	81	13	423	34	14	21	28	1.93
13139566--13139720	36	4.0	36	79	15	184	36	14	20	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13139520--13139855	82	4.0	81	87	7	469	34	15	21	28	1.94
13139498--13139855	128	2.8	126	77	16	412	34	14	21	28	1.93
13147853--13147911	29	2.0	29	100	0	118	33	0	10	55	1.33
13147861--13147913	17	3.4	17	70	24	62	32	0	13	54	1.39
13152602--13152642	20	2.0	22	85	9	59	24	4	9	60	1.47
13161809--13162031	79	2.8	78	83	7	272	24	27	22	25	2.00
13161809--13162031	39	5.7	40	87	6	280	24	27	22	25	2.00
13168160--13168186	13	2.1	13	100	0	54	33	37	7	22	1.82
13168680--13168770	44	2.1	44	85	4	121	42	4	5	47	1.46
13174715--13174747	16	2.0	17	88	5	50	48	6	0	45	1.27
13174929--13174979	26	2.0	26	88	0	75	37	17	5	39	1.74
13176939--13177702	382	2.0	382	99	0	1519	20	23	15	40	1.90
13179223--13179270	24	2.0	24	83	4	60	43	0	8	47	1.33
13179464--13179502	21	1.9	20	85	15	53	53	2	2	41	1.28
13185268--13185310	18	2.4	18	92	0	68	51	13	11	23	1.74
13187160--13187209	26	2.0	25	88	4	73	50	26	6	18	1.69
13195700--13195734	18	2.0	17	88	5	52	54	0	0	45	0.99
13195739--13195930	66	3.1	66	67	22	187	48	5	4	41	1.46
13195820--13195854	18	2.0	17	88	5	52	54	0	0	45	0.99
13195924--13195974	16	3.3	15	81	13	50	50	0	1	47	1.12
13195924--13195974	15	3.2	16	84	13	54	50	0	1	47	1.12
13195686--13195975	120	2.4	120	97	0	535	48	4	3	44	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13196016--13196069	15	3.9	15	72	16	53	51	1	0	46	1.11
13196038--13196177	44	3.1	44	65	25	112	47	6	1	44	1.37
13195987--13196374	91	4.3	91	96	1	694	45	4	2	46	1.37
13195987--13196374	181	2.2	179	95	1	688	45	4	2	46	1.37
13207048--13207096	16	3.3	15	75	8	55	67	2	6	24	1.24
13213398--13213472	22	3.4	22	68	3	60	29	20	14	36	1.92
13213393--13213484	45	2.0	45	91	0	148	32	18	14	34	1.91
13228824--13228989	85	2.0	85	86	2	235	34	7	7	51	1.57
13228954--13228986	14	2.4	14	90	5	50	39	6	0	54	1.25
13230232--13230273	23	1.9	21	81	18	50	59	9	2	28	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126