genome.fa.s14.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  122  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37898909--37898971	21	3.0	21	88	2	90	30	3	33	33	1.74
37900971--37901007	7	5.6	7	93	6	60	13	0	0	86	0.57
37900972--37901011	6	6.5	6	86	13	55	15	0	0	85	0.61
37900971--37901011	13	3.2	13	87	12	59	14	0	0	85	0.60
37900972--37901011	19	2.2	18	95	4	71	15	0	0	85	0.61
37911321--37911585	40	6.7	40	83	6	263	25	27	21	25	1.99
37911517--37911594	40	1.9	41	82	10	97	26	28	20	24	1.99
37913098--37913123	9	2.9	9	100	0	52	76	11	0	11	1.01
37923485--37923894	206	2.0	206	98	0	784	28	13	19	38	1.89
37926031--37926080	21	2.2	21	82	10	55	44	18	14	24	1.86
37938219--37938282	27	2.4	27	91	0	101	23	15	14	46	1.82
37956988--37957030	23	1.9	23	95	4	79	34	4	11	48	1.60
37961070--37961118	20	2.5	20	75	0	53	42	16	20	20	1.89
37961061--37961118	30	1.9	31	85	3	82	41	17	22	18	1.90
37961247--37961295	21	2.3	21	96	0	89	32	28	22	16	1.95
37965449--37965486	7	5.3	7	90	3	58	81	0	2	15	0.80
37966130--37966406	44	6.5	44	72	10	205	29	22	20	28	1.98
37966132--37966365	128	1.8	125	85	2	324	29	20	20	28	1.98
37966213--37966412	85	2.4	84	88	0	292	28	21	22	28	1.99
37966494--37966877	50	7.7	50	68	5	238	28	23	19	28	1.98
37966462--37966872	100	4.1	100	87	1	583	28	22	19	29	1.98
37975080--37975173	44	2.1	44	94	0	161	38	13	5	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37975116--37975241	66	1.9	67	87	8	186	39	15	5	39	1.70
37975783--37975807	13	1.9	13	100	0	50	40	28	8	24	1.83
37978332--37978380	23	2.1	23	88	0	71	34	30	6	28	1.82
37980482--37980506	12	2.1	12	100	0	50	32	8	16	44	1.76
37986694--37986772	37	2.1	37	90	0	122	25	31	18	24	1.98
37986891--37987974	49	22.3	49	98	0	2031	30	28	8	32	1.86
37991386--37991417	16	2.0	16	93	0	55	25	21	0	53	1.46
37991731--37991859	50	2.5	51	83	1	161	28	26	19	25	1.99
37992214--37992491	46	6.0	46	99	0	540	33	21	19	25	1.97
37994564--37994603	18	2.2	18	86	4	53	12	27	0	60	1.33
37995665--37995703	15	2.6	15	84	8	53	15	10	7	66	1.43
37995742--37995783	11	4.0	11	81	12	61	14	0	7	78	0.95
37995742--37995779	9	3.8	10	89	10	60	10	0	5	84	0.77
37995742--37995779	19	2.0	20	94	5	69	10	0	5	84	0.77
37997509--37997785	46	6.0	46	98	0	529	33	21	19	25	1.97
37998406--37998452	23	2.1	23	84	7	62	51	12	4	31	1.59
38000478--38000517	18	2.2	18	86	4	53	12	27	0	60	1.33
38001578--38001615	14	2.6	15	95	4	69	21	13	5	60	1.52
38001652--38001698	12	3.8	12	85	2	67	27	2	4	65	1.22
38001655--38001698	13	3.5	13	81	3	54	22	2	4	70	1.17
38001653--38001709	24	2.4	23	91	8	89	24	1	5	68	1.20
38001653--38001709	12	4.8	12	82	4	62	24	1	5	68	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38003379--38003430	27	1.9	27	92	0	86	23	21	15	40	1.91
38007290--38007366	24	3.3	23	80	8	75	74	1	18	6	1.11
38009641--38009687	20	2.3	20	81	0	58	23	12	34	29	1.92
38016682--38016956	135	2.0	135	95	2	491	40	23	14	21	1.90
38017451--38017945	60	8.2	60	100	0	990	26	18	19	35	1.95
38019161--38019211	21	2.4	22	83	6	61	9	21	0	68	1.18
38031117--38031195	25	3.2	24	80	7	88	29	15	21	34	1.94
38034689--38034718	11	2.7	11	94	0	51	50	20	10	20	1.76
38035910--38035949	21	1.9	21	89	0	62	37	7	0	55	1.29
38038187--38038313	35	3.6	35	81	5	141	43	32	9	14	1.78
38040028--38040118	27	3.4	27	79	7	96	27	25	13	34	1.93
38043585--38043611	7	3.9	7	100	0	54	0	44	25	29	1.54
38052537--38052577	20	2.0	20	100	0	82	24	29	9	36	1.87
38056164--38056212	20	2.4	20	83	12	64	22	6	16	55	1.63
38056164--38056213	21	2.4	21	87	9	68	22	6	16	56	1.62
38060499--38062249	876	2.0	876	100	0	3502	33	15	19	31	1.93
38062901--38063166	103	2.6	104	90	3	419	19	20	29	29	1.97
38073363--38073628	103	2.6	104	90	3	419	19	20	29	29	1.97
38075264--38075372	20	5.4	20	92	0	164	28	33	15	22	1.94
38075264--38075372	10	10.9	10	67	26	54	28	33	15	22	1.94
38078961--38079170	40	5.3	39	87	5	233	24	21	28	25	1.99
38078908--38079170	120	2.2	120	81	4	300	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38078961--38079205	80	3.1	80	81	3	228	25	21	28	24	1.99
38088409--38088528	50	2.4	50	84	5	161	38	15	15	30	1.89
38099420--38099453	12	2.8	12	95	0	59	61	0	23	14	1.33
38101360--38101434	24	3.2	24	78	17	104	28	16	14	41	1.87
38101373--38101444	21	3.3	21	76	17	83	26	22	12	38	1.89
38101353--38101444	45	2.0	45	95	0	166	28	18	14	39	1.89
38101655--38101740	40	2.2	40	93	0	145	46	11	11	30	1.76
38103964--38104012	17	2.6	19	78	15	57	14	22	0	63	1.30
38105775--38105835	24	2.5	24	91	0	95	31	13	14	40	1.84
38106065--38106148	40	2.1	40	88	0	123	44	14	9	32	1.77
38106393--38106449	21	2.7	22	86	8	82	29	8	33	28	1.87
38106657--38106720	33	2.0	32	81	3	74	43	1	4	50	1.32
38118652--38119197	273	2.0	273	96	0	1011	30	24	11	32	1.91
38135337--38135403	33	2.0	33	94	0	116	26	14	17	40	1.89
38137281--38137329	10	4.9	10	78	9	55	26	16	30	26	1.97
38137283--38137329	20	2.3	20	89	7	69	25	17	31	25	1.97
38138996--38139076	12	6.8	12	69	17	53	12	24	1	61	1.38
38139011--38139066	18	3.0	20	68	26	59	10	26	0	62	1.28
38139106--38139152	15	3.1	15	84	9	60	12	17	0	70	1.17
38140195--38140225	10	3.2	10	90	9	55	0	9	0	90	0.46
38140199--38140224	9	2.9	9	100	0	52	0	7	0	92	0.39
38140236--38140272	11	3.4	11	100	0	74	16	0	8	75	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38141487--38141535	10	4.9	10	78	9	55	26	16	30	26	1.97
38141489--38141535	20	2.3	20	89	7	69	25	17	31	25	1.97
38142902--38142944	21	2.0	21	86	8	61	34	6	34	23	1.82
38142897--38142951	18	3.1	18	83	0	56	38	7	34	20	1.80
38146449--38146485	17	2.1	18	90	5	58	48	10	0	40	1.38
38148502--38148564	21	3.0	21	88	2	81	33	31	4	30	1.78
38154147--38154186	20	2.0	21	90	5	64	70	0	25	5	1.08
38177020--38177049	14	2.1	14	100	0	60	43	0	33	23	1.54
38180077--38180161	44	1.9	44	97	0	161	40	3	21	35	1.70
38182652--38182683	9	3.7	9	95	4	57	15	0	9	75	1.05
38187004--38187047	24	1.9	24	86	9	65	61	4	4	29	1.36
38194995--38195023	14	2.1	14	100	0	58	37	0	34	27	1.57
38195277--38195461	51	3.7	50	84	5	221	24	16	28	30	1.96
38195277--38195461	101	1.8	102	83	3	248	24	16	28	30	1.96
38220554--38220604	21	2.4	21	93	0	84	37	5	33	23	1.79
38221216--38221243	4	7.0	4	100	0	56	50	0	0	50	1.00
38222060--38222132	30	2.4	30	90	0	110	39	12	30	17	1.87
38224454--38224487	17	2.0	17	88	0	50	23	11	11	52	1.70
38226133--38226175	21	2.0	21	82	8	52	41	6	11	39	1.68
38226795--38226833	19	2.1	19	85	0	51	53	10	5	30	1.56
38229698--38229723	12	2.2	12	100	0	52	15	15	42	26	1.87
38233355--38233505	38	3.9	38	77	11	128	48	9	8	33	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38236835--38237005	43	4.0	43	74	11	127	25	14	25	34	1.94
38236835--38236962	42	3.0	42	78	7	132	25	14	25	34	1.94
38240102--38240143	17	2.6	16	82	14	50	9	14	0	76	1.02
38240112--38240160	21	2.3	22	83	16	59	12	16	0	71	1.14
38240114--38240160	22	2.1	24	84	11	64	10	17	0	72	1.12
38241964--38242019	28	2.0	28	100	0	112	10	25	10	53	1.67
38242680--38242940	27	9.7	27	85	2	328	40	18	16	25	1.90
38242681--38242940	107	2.4	108	84	7	357	40	18	16	25	1.90
38242681--38242943	134	2.0	134	85	3	359	40	18	16	25	1.90
38243307--38243390	30	2.8	30	88	0	132	17	26	26	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126