genome.fa.s14.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  105  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31947975--31948019	21	2.1	21	87	0	63	44	11	2	42	1.52
31948013--31948037	11	2.3	11	100	0	50	28	16	0	56	1.41
31951146--31951349	109	1.9	109	88	0	309	31	23	12	32	1.92
31953776--31953848	27	2.7	27	85	4	85	26	21	17	34	1.96
31967381--31967421	20	2.0	20	100	0	82	41	24	0	34	1.55
31967533--31967637	42	2.5	42	83	9	117	29	23	19	27	1.98
31967533--31967693	86	1.9	84	82	10	202	32	24	17	26	1.97
31973376--31973423	19	2.4	21	83	13	57	27	2	8	62	1.35
31973386--31973423	18	2.1	18	85	14	51	28	2	7	60	1.38
31980107--31980131	9	2.8	9	100	0	50	68	0	0	32	0.90
31980663--31980699	9	4.1	9	92	0	65	29	10	13	45	1.77
31980752--31980782	9	3.4	9	90	0	53	38	22	12	25	1.90
31982537--31982562	10	2.6	10	100	0	52	73	0	0	26	0.84
31986789--31986818	15	2.0	15	93	0	51	56	0	0	43	0.99
31987828--31987930	54	1.9	54	97	0	197	37	15	17	29	1.91
31988110--31988147	20	1.9	20	88	0	58	65	2	2	28	1.19
31988727--31988765	20	2.0	20	94	0	69	64	2	2	30	1.21
31992643--31992671	15	1.9	15	100	0	58	41	6	17	34	1.76
31994502--31994536	17	2.0	17	88	5	52	40	0	25	34	1.56
31998775--31999075	57	5.3	57	77	6	259	30	21	16	30	1.96
31998775--31999067	29	10.3	28	72	5	174	30	22	17	30	1.96
32000452--32000476	6	4.2	6	100	0	50	68	0	16	16	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32002318--32002358	21	2.0	21	95	0	73	60	7	0	31	1.24
32006772--32006847	21	3.8	20	84	3	82	42	11	9	36	1.74
32006839--32006883	21	2.0	23	83	8	58	37	4	13	44	1.64
32007048--32007086	19	2.0	21	85	10	55	15	10	5	69	1.34
32007308--32007353	3	15.3	3	86	8	67	32	0	2	65	1.05
32007292--32007354	18	3.8	17	84	12	69	31	0	3	65	1.09
32007611--32007726	51	2.3	52	80	7	132	31	6	6	56	1.48
32014085--32014967	44	20.1	44	64	8	211	30	19	23	25	1.98
32015001--32015085	44	1.9	44	90	4	136	28	17	24	29	1.97
32013945--32015003	132	8.0	132	90	0	1663	30	19	23	25	1.98
32014987--32015085	44	2.2	44	85	5	110	29	18	24	28	1.98
32015289--32015350	19	3.1	21	84	8	78	41	9	12	35	1.76
32015544--32015582	19	2.0	21	85	10	55	15	10	5	69	1.34
32015804--32015846	3	14.3	3	80	9	52	30	0	0	69	0.88
32027676--32027729	21	2.6	21	84	0	72	25	0	14	59	1.36
32027678--32027728	7	7.3	7	80	14	52	23	0	15	60	1.35
32027831--32027985	79	2.0	79	93	0	265	44	9	13	32	1.75
32032302--32032375	38	1.9	39	94	2	132	55	10	0	33	1.35
32033832--32033861	11	2.7	11	94	0	51	3	0	6	90	0.56
32047536--32047775	133	1.8	132	88	4	367	37	8	20	34	1.83
32049356--32049427	27	2.5	29	80	11	76	23	18	19	38	1.93
32049434--32049494	27	2.2	27	80	13	72	37	18	21	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32049549--32049637	28	3.2	27	81	7	106	31	14	21	32	1.93
32052191--32052235	22	2.0	22	86	8	63	35	17	2	44	1.62
32052445--32052512	25	2.7	25	71	13	59	35	16	23	25	1.95
32058605--32058660	27	2.2	25	83	6	67	7	8	7	76	1.15
32058766--32060851	699	3.0	699	99	0	4118	31	16	19	33	1.94
32066278--32067479	73	15.7	73	78	12	1073	32	19	17	29	1.95
32066323--32067465	526	2.1	532	86	6	1567	32	20	17	29	1.95
32067529--32067657	69	1.9	69	90	0	204	27	20	15	36	1.93
32067675--32067870	73	2.7	70	76	6	187	35	20	13	30	1.91
32067409--32068242	195	4.3	195	97	0	1568	34	20	13	31	1.91
32079890--32080058	83	2.0	84	96	3	313	37	11	16	34	1.85
32080214--32082262	517	4.0	518	91	3	3175	36	8	19	35	1.83
32090838--32091022	94	2.0	94	97	0	352	32	20	18	28	1.96
32101699--32101742	22	2.0	22	95	0	79	15	20	22	40	1.90
32104857--32104908	27	1.9	27	84	7	70	30	1	0	67	1.02
32105486--32105588	18	5.6	18	64	22	54	66	2	1	29	1.17
32105495--32105590	27	3.6	27	73	14	74	64	3	2	30	1.20
32105485--32105588	28	3.8	26	75	14	86	65	2	1	29	1.18
32105495--32105611	35	3.2	38	73	17	113	64	3	1	30	1.20
32106142--32106298	9	17.0	9	72	13	97	35	1	0	62	1.08
32106170--32106272	19	5.4	19	76	17	81	33	0	0	66	0.92
32106328--32106358	7	4.4	7	100	0	62	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32106650--32106710	31	1.9	32	87	9	90	45	9	14	29	1.77
32107534--32107568	17	2.1	17	89	10	54	40	0	0	60	0.97
32107534--32107568	16	2.1	17	89	5	54	40	0	0	60	0.97
32124121--32124155	18	1.9	18	88	0	52	8	22	0	68	1.16
32124116--32124157	18	2.3	19	79	8	50	7	21	0	71	1.09
32126461--32126562	42	2.4	43	80	8	118	19	30	22	27	1.98
32133519--32133628	14	7.9	14	72	19	70	76	8	4	10	1.14
32133519--32133575	12	4.2	13	80	15	55	75	8	1	14	1.11
32133524--32133622	17	6.1	16	74	14	78	78	8	4	9	1.07
32133530--32133622	42	2.3	42	81	5	111	78	8	4	8	1.08
32134855--32135182	44	7.5	44	64	17	119	28	21	25	25	1.99
32134836--32135670	131	6.4	131	93	0	1375	30	20	24	24	1.99
32135725--32136186	50	9.2	50	71	6	335	33	24	19	22	1.97
32135725--32136233	100	5.1	100	89	0	748	33	23	19	23	1.97
32143993--32144386	199	2.0	199	92	2	666	33	13	12	40	1.82
32151401--32151558	43	3.7	44	79	8	157	30	15	24	29	1.96
32155538--32155634	48	2.0	48	89	0	149	50	10	9	29	1.67
32160625--32160782	43	3.7	43	86	5	214	32	26	17	23	1.97
32160768--32160796	14	2.1	14	100	0	58	20	27	24	27	1.99
32160725--32160837	57	2.0	57	89	5	176	27	26	20	25	1.99
32160683--32160870	99	1.9	99	83	7	247	31	26	16	25	1.96
32160843--32160897	27	2.0	27	92	0	92	38	23	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32160801--32160934	70	1.9	70	84	3	180	35	26	13	25	1.93
32164049--32164139	47	1.9	47	95	0	164	28	23	9	38	1.86
32166043--32166170	14	8.9	15	76	15	76	36	34	0	28	1.63
32166091--32166181	15	6.3	15	80	12	91	39	32	0	27	1.57
32166407--32166471	21	3.0	22	80	8	80	38	40	0	21	1.54
32166441--32166467	14	1.9	14	100	0	54	37	40	0	22	1.54
32165950--32166541	304	1.9	304	88	4	901	41	26	2	29	1.69
32166842--32167204	41	8.9	41	79	3	358	32	27	19	21	1.97
32168623--32168659	11	3.5	11	92	7	67	51	0	0	48	1.00
32168649--32168737	26	3.5	25	95	4	160	58	0	3	38	1.15
32169123--32169147	13	1.9	13	100	0	50	56	20	0	24	1.43
32169721--32169812	32	2.9	32	80	6	105	25	23	27	23	2.00
32171217--32171270	25	2.2	24	90	6	90	38	0	0	61	0.96
32173411--32173487	40	1.9	40	89	0	118	23	24	27	24	2.00
32173666--32173741	22	3.4	23	82	8	77	26	30	0	43	1.55
32173665--32173739	33	2.2	33	80	13	82	25	30	0	44	1.55
32173665--32173741	11	6.9	11	71	21	63	25	29	0	44	1.55
32175607--32175646	18	2.2	18	86	0	53	17	30	7	45	1.76
32175902--32175950	21	2.3	21	82	6	64	36	38	22	2	1.66
32176187--32176887	22	32.0	22	73	10	372	45	25	0	27	1.59
32176187--32176887	21	32.0	21	72	12	326	45	25	0	27	1.59
32176187--32176887	43	16.0	42	72	11	326	45	25	0	27	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32176587--32176641	28	2.0	28	96	0	101	43	36	0	20	1.52
32176588--32176642	15	3.9	15	75	20	64	43	36	0	20	1.52
32176610--32176887	65	4.3	65	84	2	323	47	27	0	24	1.57
32176887--32176990	53	2.0	53	94	0	181	43	9	3	43	1.55
32179998--32180423	126	3.4	125	85	2	543	29	22	16	31	1.96
32181417--32181458	20	2.1	20	86	0	57	47	0	7	45	1.30
32181641--32181665	13	1.9	13	100	0	50	32	4	16	48	1.64
32193687--32193720	16	2.1	16	88	0	50	32	2	0	64	1.08
32193684--32193726	22	2.0	22	90	0	68	32	2	0	65	1.06
32193684--32193728	6	7.8	6	80	9	58	31	2	0	66	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126