genome.fa.s14.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  15  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4322811--4323267	120	3.8	119	88	5	717	49	6	2	42	1.40
4323185--4323219	18	2.0	17	88	5	52	54	0	0	45	0.99
4328120--4328150	12	2.6	12	94	0	53	29	41	22	6	1.78
4336696--4336741	23	2.0	23	83	8	58	45	4	0	50	1.21
4340591--4340759	56	3.0	56	92	2	266	27	6	17	48	1.71
4344382--4344438	16	3.5	16	72	13	53	24	1	22	50	1.58
4353520--4353550	15	2.0	16	93	6	55	45	41	6	6	1.55
4357201--4357261	31	2.0	31	90	0	95	39	19	16	24	1.92
4358341--4358374	15	2.3	15	89	0	50	58	8	14	17	1.61
4364779--4364810	15	2.1	15	94	0	55	50	28	21	0	1.49
4372240--4372264	4	6.2	4	100	0	50	0	24	0	76	0.80
4380426--4380453	3	9.3	3	100	0	56	67	0	0	32	0.91
4382414--4383562	576	2.0	575	98	0	2244	36	19	14	29	1.91
4393135--4393246	54	2.1	54	94	0	197	29	25	17	27	1.98
4398483--4398547	29	2.2	29	83	2	76	35	7	15	41	1.76
4402670--4402871	108	1.9	108	88	2	307	37	18	16	28	1.92
4403542--4403577	15	2.5	15	86	4	56	52	5	5	36	1.48
4404694--4404732	11	3.5	11	86	6	51	82	5	10	2	0.93
4413399--4413436	20	2.0	20	89	5	60	31	2	15	50	1.58
4428935--4428997	31	2.0	31	87	0	90	33	11	11	44	1.75
4433095--4433150	23	2.4	23	82	11	69	62	3	0	33	1.12
4440179--4440230	25	2.1	24	82	13	61	73	5	1	19	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4443240--4443690	235	1.9	236	86	2	645	37	10	13	39	1.78
4455572--4455613	16	2.6	16	84	0	57	54	7	2	35	1.41
4455711--4455739	3	9.7	3	100	0	58	34	0	0	65	0.93
4465804--4465871	31	2.2	31	84	5	84	57	7	5	29	1.50
4465824--4465888	31	2.1	30	86	11	87	53	6	4	35	1.46
4469965--4470375	103	4.0	103	96	0	732	31	27	19	20	1.97
4476152--4476239	46	2.0	44	90	4	140	30	13	27	28	1.94
4476145--4476278	46	3.0	45	80	4	135	34	14	24	26	1.94
4480028--4480335	103	3.0	103	95	0	526	31	27	19	21	1.97
4485379--4485453	39	2.0	38	85	12	102	57	0	5	37	1.22
4485444--4485489	23	2.1	21	84	8	56	45	4	10	39	1.59
4489146--4489206	27	2.3	27	94	2	106	19	13	32	34	1.90
4505703--4505838	67	2.0	67	98	0	263	36	16	19	28	1.93
4533755--4534630	438	2.0	438	100	0	1752	36	21	18	24	1.95
4564475--4564532	28	2.1	28	83	6	73	60	0	10	29	1.30
4567946--4567977	13	2.5	13	94	0	55	31	0	12	56	1.37
4568072--4568256	50	3.7	50	99	0	361	26	23	32	16	1.96
4573551--4573678	43	3.0	43	89	1	177	36	21	19	21	1.95
4573596--4573699	43	2.4	43	86	0	127	36	25	16	21	1.94
4584874--4584909	16	2.2	16	90	0	54	72	0	0	27	0.85
4584921--4584969	17	2.8	18	82	17	59	69	4	0	26	1.06
4585036--4585105	10	7.4	10	76	9	58	67	2	1	28	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4585039--4585098	9	6.6	9	77	11	59	68	1	1	28	1.09
4585028--4585105	19	4.2	19	71	15	63	67	2	2	26	1.16
4584999--4585089	37	2.3	38	81	10	96	62	2	4	30	1.27
4585027--4585098	37	1.9	37	86	5	101	68	1	2	27	1.12
4585030--4585097	18	3.8	17	76	19	66	69	1	2	26	1.12
4585895--4585935	17	2.3	18	91	4	66	60	0	0	39	0.96
4585892--4585982	22	4.2	21	71	22	57	59	2	2	36	1.22
4586811--4586859	18	2.7	20	81	15	61	67	0	6	26	1.14
4591990--4592046	13	4.1	13	76	14	60	64	0	35	0	0.93
4592012--4592094	20	4.0	21	72	16	82	66	0	32	1	1.00
4592010--4592104	10	9.0	11	70	18	53	67	0	30	2	1.02
4592357--4592862	153	3.3	154	89	3	759	50	8	10	30	1.68
4596020--4596120	40	2.6	40	80	13	113	50	9	4	34	1.57
4596102--4596148	23	2.0	23	84	8	60	59	14	0	25	1.36
4596425--4596454	9	3.3	9	95	0	51	0	40	0	60	0.97
4596631--4596674	10	4.3	10	82	2	52	22	0	2	75	0.92
4598157--4598238	42	2.0	42	100	0	164	39	18	21	20	1.93
4603068--4603108	21	2.0	21	90	9	66	12	9	14	63	1.52
4607277--4607302	10	2.6	10	100	0	52	38	0	7	53	1.30
4609832--4609935	51	2.0	51	100	0	208	15	33	19	31	1.93
4609925--4610078	48	3.2	48	93	0	245	9	29	26	33	1.89
4609925--4610105	96	1.9	96	79	2	202	9	33	24	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4611895--4612015	38	3.1	39	78	15	110	48	9	5	35	1.60
4612769--4612870	52	2.0	52	98	0	195	36	10	22	30	1.88
4618527--4618565	8	4.9	8	84	9	53	69	0	0	30	0.89
4618530--4618566	19	2.1	17	90	10	56	70	0	0	29	0.88
4618527--4618605	3	25.3	3	73	19	56	62	3	1	32	1.21
4618990--4619049	30	2.0	30	84	9	79	33	8	10	48	1.67
4621435--4621516	26	3.0	26	84	10	119	36	9	0	53	1.34
4621431--4621516	29	3.1	28	88	6	131	34	10	0	54	1.35
4624498--4624554	29	2.0	29	86	10	82	71	10	17	0	1.12
4624504--4624551	22	2.2	22	82	14	55	72	10	16	0	1.10
4625205--4625251	24	2.0	23	84	12	60	51	4	14	29	1.62
4625707--4625732	12	2.2	12	100	0	52	50	0	7	42	1.31
4627711--4627757	25	1.9	25	86	4	69	17	25	17	40	1.90
4627832--4627960	26	5.0	26	75	8	111	20	24	20	35	1.96
4627830--4628002	52	3.3	52	83	4	206	20	24	19	36	1.95
4627830--4627991	26	6.2	25	74	16	100	20	24	18	37	1.94
4637334--4637367	17	2.0	17	94	0	59	35	0	8	55	1.31
4637658--4637708	23	2.1	25	85	10	70	64	7	9	17	1.46
4643669--4643695	11	2.5	11	100	0	54	77	0	22	0	0.76
4644785--4644818	7	5.0	7	89	7	52	17	0	0	82	0.67
4644785--4644811	13	2.1	13	100	0	54	14	0	0	85	0.61
4645109--4645194	42	2.0	42	97	0	163	37	9	15	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4646291--4646373	41	2.0	41	97	0	157	22	24	21	31	1.98
4650247--4650310	3	21.0	3	74	3	56	31	4	6	57	1.44
4650929--4651239	112	2.8	110	86	2	428	31	15	20	32	1.94
4652882--4652962	40	2.0	40	95	0	144	37	13	19	29	1.90
4661739--4661786	24	2.0	24	88	8	71	27	10	10	52	1.68
4668822--4668895	29	2.5	29	82	4	85	25	14	13	45	1.82
4671229--4671267	19	2.0	21	90	10	64	35	5	2	56	1.35
4675558--4675589	2	15.5	2	93	6	55	50	3	0	46	1.17
4679198--4679249	15	3.4	16	75	25	58	59	0	0	40	0.97
4679190--4679242	24	2.1	26	86	10	74	56	0	0	43	0.99
4679190--4679254	30	2.3	27	86	7	85	58	0	0	41	0.98
4679386--4679432	3	15.7	3	82	8	60	40	0	0	59	0.97
4679384--4679432	19	2.5	22	81	18	63	42	0	0	57	0.99
4680143--4680226	21	4.0	22	81	10	86	16	23	26	33	1.96
4680156--4680228	20	3.5	21	83	9	87	15	23	27	34	1.94
4681310--4681341	12	2.6	13	85	14	50	50	0	18	31	1.48
4687163--4687204	5	8.6	5	94	5	77	61	0	0	38	0.96
4687860--4687934	27	2.8	27	93	4	125	25	29	29	16	1.96
4688085--4688123	19	2.0	21	85	10	55	23	0	10	66	1.22
4688190--4688230	3	13.7	3	100	0	82	0	0	31	68	0.90
4689022--4689059	18	2.1	18	100	0	76	34	10	44	10	1.73
4699149--4699211	16	3.4	19	70	25	62	42	0	1	55	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4699122--4699198	28	2.6	28	80	13	68	37	2	2	57	1.27
4699661--4699730	26	2.8	26	78	8	74	14	11	0	74	1.08
4699672--4699728	22	2.5	22	78	13	71	14	12	0	73	1.09
4704628--4704654	2	13.5	2	100	0	54	0	0	48	51	1.00
4704855--4704892	7	5.4	7	100	0	76	42	0	13	44	1.43
4705177--4705424	43	5.8	43	86	1	300	28	30	17	23	1.97
4705177--4705424	129	1.9	129	85	3	338	28	30	17	23	1.97
4707981--4708032	19	2.7	19	78	21	56	51	0	7	40	1.30
4708893--4708971	29	2.7	29	79	9	72	48	31	0	20	1.50
4708175--4709767	796	2.0	796	100	0	3186	40	13	13	32	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126