genome.fa.s14.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  60  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17484169--17484240	29	2.6	27	80	13	83	41	29	1	27	1.64
17484224--17484270	13	3.6	13	83	8	60	34	40	0	25	1.56
17487382--17487952	252	2.3	252	88	2	853	29	21	17	31	1.96
17487382--17487952	127	4.5	127	89	0	817	29	21	17	31	1.96
17504190--17504254	29	2.1	33	81	13	77	1	27	1	69	1.07
17509912--17509962	20	2.4	22	77	9	61	37	3	1	56	1.29
17510365--17510455	44	2.1	44	87	0	128	49	3	6	40	1.45
17510065--17510534	256	1.8	254	83	7	619	48	7	6	36	1.58
17529523--17529592	31	2.3	30	75	7	70	48	21	7	22	1.74
17529628--17529667	21	1.9	21	94	0	71	25	15	27	32	1.95
17532052--17532345	143	2.0	145	90	2	468	39	10	9	40	1.72
17532984--17533008	3	8.3	3	100	0	50	32	0	0	68	0.90
17537479--17537508	13	2.3	13	94	0	51	66	23	10	0	1.21
17538442--17538474	12	2.8	12	86	4	50	30	3	0	66	1.06
17539081--17539190	41	2.7	39	81	13	109	30	20	28	20	1.97
17539096--17539190	41	2.3	40	89	5	138	32	22	26	18	1.97
17539269--17539450	83	2.2	81	87	5	258	17	23	30	29	1.97
17539269--17539449	41	4.4	41	88	5	258	17	23	29	29	1.97
17539589--17539788	66	3.0	66	99	0	391	45	6	8	40	1.59
17539928--17539976	15	3.4	15	78	18	59	20	0	32	46	1.51
17539958--17540005	21	2.3	21	77	0	60	20	0	35	43	1.52
17543665--17543731	35	1.9	35	81	6	82	38	2	2	55	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17543850--17544198	42	8.3	42	89	2	479	22	18	32	26	1.97
17545040--17545150	41	2.7	42	94	4	199	29	27	20	21	1.98
17550554--17550676	42	2.9	43	80	6	151	26	14	26	32	1.95
17555911--17555962	18	2.8	18	85	11	70	17	23	25	34	1.96
17562632--17562755	40	3.1	40	74	1	124	35	15	24	25	1.94
17563223--17563271	14	3.4	14	88	2	71	22	0	38	38	1.54
17563282--17563323	15	2.8	15	82	13	59	21	0	42	35	1.53
17563304--17563344	21	1.9	22	85	5	57	24	2	39	34	1.69
17563533--17563567	15	2.4	15	90	4	54	20	0	40	40	1.52
17563562--17563618	14	3.9	15	81	4	73	21	0	43	35	1.52
17563554--17563594	21	2.0	20	85	4	55	19	0	41	39	1.52
17563331--17564045	284	2.5	291	84	7	920	29	2	26	41	1.69
17563818--17563877	13	4.4	14	78	16	54	25	0	35	40	1.56
17563882--17563930	7	6.9	7	76	4	53	20	2	46	30	1.62
17563878--17563920	15	2.9	15	86	3	61	18	2	46	32	1.62
17564405--17564755	175	2.0	176	97	0	659	38	10	9	41	1.71
17567584--17567631	23	2.1	23	100	0	96	39	43	4	12	1.62
17576383--17576488	50	2.1	51	81	10	119	54	5	0	38	1.30
17576735--17576766	16	1.9	17	93	6	57	18	6	28	46	1.73
17576820--17576853	16	2.1	17	88	5	52	44	0	0	55	0.99
17584952--17585008	10	5.2	11	74	21	57	21	35	0	43	1.52
17584969--17585024	22	2.5	22	97	2	103	28	32	0	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17584996--17585099	51	2.0	51	98	0	199	29	26	0	43	1.55
17586244--17586268	7	3.6	7	100	0	50	28	0	12	60	1.32
17586917--17586953	18	2.1	18	89	0	56	27	35	5	32	1.79
17587182--17587229	9	5.3	9	94	0	87	43	22	33	0	1.54
17587481--17588320	23	34.5	23	77	16	770	47	22	0	29	1.57
17587589--17587686	29	3.6	29	84	16	154	47	22	0	29	1.51
17587604--17588332	125	5.9	124	80	12	633	46	22	0	30	1.56
17588326--17588546	116	1.9	116	93	1	381	39	9	9	41	1.70
17591578--17591955	126	3.0	125	87	4	537	33	22	14	29	1.94
17607420--17607466	21	2.2	22	92	3	78	21	19	38	21	1.94
17611716--17611765	25	2.0	26	84	4	66	38	16	12	34	1.85
17613711--17613757	22	2.1	22	100	0	94	29	38	0	31	1.58
17614545--17614598	21	2.6	21	76	5	56	33	0	11	55	1.35
17616358--17616416	29	2.0	30	83	3	75	22	25	3	49	1.65
17623908--17623946	19	2.1	19	95	0	69	38	17	5	38	1.72
17626308--17626365	27	2.1	27	83	0	71	34	6	17	41	1.76
17628697--17628743	11	4.2	11	86	2	67	17	31	0	51	1.46
17628709--17628755	22	2.1	22	88	0	67	21	31	0	46	1.51
17628721--17628846	51	2.5	51	86	2	182	30	25	0	43	1.60
17631133--17631246	25	4.7	25	69	20	98	37	1	15	44	1.57
17631246--17631865	29	20.4	29	79	9	571	47	31	0	20	1.53
17631269--17631353	41	2.1	41	90	0	134	43	35	1	20	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17631299--17631331	12	2.8	12	90	4	50	33	45	0	21	1.52
17631310--17631861	58	9.3	58	87	7	732	48	31	0	19	1.51
17631310--17631865	87	6.2	87	85	7	711	48	31	0	19	1.51
17631458--17631546	44	2.0	44	95	0	160	47	32	0	20	1.50
17631863--17632019	55	2.9	55	97	0	296	40	10	5	43	1.60
17632389--17632423	15	2.2	16	95	5	63	37	14	28	20	1.91
17635060--17635537	126	3.8	127	93	2	772	34	21	14	30	1.93
17635060--17635537	250	1.9	251	90	3	766	34	21	14	30	1.93
17645717--17645847	42	3.1	42	79	0	145	40	16	24	19	1.90
17645702--17645784	21	4.0	21	68	9	55	38	18	27	15	1.91
17649824--17649849	13	2.0	13	100	0	52	30	7	23	38	1.83
17657921--17658090	43	3.9	43	75	13	143	23	16	28	31	1.96
17659821--17660652	57	14.6	57	100	0	1664	33	3	20	42	1.70
17662025--17662055	7	4.4	7	95	0	53	74	0	16	9	1.07
17663471--17663517	24	2.0	24	86	0	67	48	0	27	23	1.51
17671139--17671515	93	4.1	93	100	0	754	24	11	16	46	1.81
17672592--17672788	41	4.8	41	98	0	367	29	21	22	26	1.99
17681185--17681220	7	5.1	7	96	0	54	22	13	27	36	1.92
17682725--17682788	24	2.7	24	82	0	74	48	1	32	17	1.56
17682913--17682979	31	2.2	29	77	12	73	35	13	11	38	1.82
17687033--17687135	51	2.0	51	96	0	188	44	22	19	13	1.85
17690035--17690241	112	1.8	114	83	4	276	32	22	11	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17691382--17691428	4	11.8	4	82	17	62	74	0	2	23	0.93
17691382--17691450	12	6.3	11	82	12	72	76	0	2	20	0.91
17691381--17691440	20	3.2	19	80	19	72	76	0	1	21	0.87
17691381--17691451	16	4.6	15	81	14	74	77	0	2	19	0.89
17695083--17695127	14	3.2	14	87	12	74	48	6	26	17	1.72
17695476--17695546	27	2.6	28	86	6	94	43	9	1	45	1.46
17700146--17700190	23	2.0	23	90	0	72	46	0	0	53	1.00
17705151--17705176	3	8.7	3	100	0	52	34	0	65	0	0.93
17706165--17706212	25	1.9	25	95	0	87	18	20	20	39	1.92
17716953--17717010	30	1.9	30	83	13	75	46	3	0	50	1.18
17725904--17725971	27	2.4	28	78	7	75	36	1	2	58	1.22
17725934--17725984	25	1.9	27	88	11	61	35	0	1	62	1.06
17725965--17726004	12	3.2	12	85	3	53	27	0	0	72	0.85
17725904--17725985	27	3.0	28	71	20	66	32	1	2	63	1.15
17726729--17726838	52	2.1	53	93	1	186	24	15	17	42	1.88
17727981--17728145	81	2.0	81	97	0	312	43	9	4	43	1.55
17730183--17730296	55	2.1	55	100	0	228	56	12	1	29	1.46
17738928--17739276	87	4.0	87	98	0	662	27	23	9	39	1.85
17739416--17739445	15	2.1	15	93	6	53	83	0	0	16	0.65
17739416--17739445	7	4.1	7	91	8	51	83	0	0	16	0.65
17750691--17750717	14	1.9	14	100	0	54	44	22	3	29	1.70
17754552--17754586	9	4.0	9	85	7	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17754547--17754584	17	2.2	18	95	4	69	47	0	2	50	1.15
17754555--17754618	28	2.2	29	81	10	78	42	0	3	54	1.16
17757947--17757994	25	1.9	25	100	0	96	33	25	6	35	1.81
17757972--17758066	42	2.2	44	88	3	140	38	17	4	38	1.70
17758046--17758081	15	2.4	15	100	0	72	41	11	0	47	1.39
17758270--17758410	16	8.5	16	72	20	112	33	11	4	51	1.57
17758217--17758419	85	2.4	85	99	0	397	33	12	6	47	1.68
17761167--17761232	22	3.2	22	70	16	77	30	6	15	48	1.69
17761273--17761327	17	3.0	18	70	15	58	34	1	16	47	1.57
17761258--17761329	17	4.1	16	73	15	54	31	1	15	51	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126