genome.fa.s14.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  115  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35492441--35492492	24	2.2	24	89	0	77	34	15	11	38	1.83
35492448--35492497	24	2.1	24	100	0	100	34	16	8	42	1.77
35498957--35499140	39	4.6	39	80	11	173	25	21	27	25	2.00
35498957--35499140	40	4.6	41	81	12	199	25	21	27	25	2.00
35498957--35499140	79	2.3	81	81	11	213	25	21	27	25	2.00
35499009--35499173	79	2.1	79	81	8	185	26	20	27	25	1.99
35515365--35515396	11	2.8	12	90	9	50	0	9	0	90	0.45
35515365--35515403	19	2.1	19	85	0	51	7	7	0	84	0.77
35516326--35516371	22	2.0	22	83	4	56	45	0	2	52	1.13
35518693--35518738	24	2.0	24	87	12	69	8	13	0	78	0.97
35524637--35524689	23	2.4	22	76	20	56	9	18	1	69	1.25
35529705--35529783	10	7.9	10	78	12	65	34	3	1	60	1.23
35529707--35529801	29	3.3	28	79	13	95	31	4	1	63	1.21
35529737--35529794	20	2.8	20	82	10	55	34	1	0	63	1.04
35539923--35540100	27	6.6	27	84	3	205	29	28	15	26	1.96
35539944--35540099	82	1.9	81	88	3	233	29	28	15	26	1.96
35563251--35563406	58	2.7	58	82	7	183	40	20	16	23	1.91
35563251--35563409	29	5.5	28	79	10	137	39	20	15	23	1.91
35563391--35563459	26	2.7	26	81	0	84	36	23	21	18	1.95
35566711--35566767	27	2.1	27	90	3	89	15	14	19	50	1.77
35577682--35577819	42	3.1	42	76	18	161	32	18	16	32	1.93
35584175--35584210	18	2.0	18	94	0	63	22	19	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35584213--35584290	37	2.1	37	92	4	131	28	11	17	42	1.84
35589867--35589941	31	2.5	30	77	12	84	37	0	1	61	1.05
35590074--35590112	16	2.4	17	87	12	64	28	0	2	69	1.02
35593905--35594020	10	12.4	9	65	17	58	62	2	3	31	1.25
35594363--35594418	17	3.2	17	80	14	62	32	3	0	64	1.11
35597553--35597655	27	3.8	27	85	1	143	21	17	20	40	1.91
35599100--35599153	25	2.2	25	83	6	65	22	40	9	27	1.84
35604040--35604088	21	2.5	20	86	6	64	42	16	22	18	1.88
35604051--35604094	21	2.1	21	95	0	79	40	13	25	20	1.89
35604056--35604101	21	2.2	21	92	0	74	41	17	23	17	1.90
35606156--35606226	5	14.6	5	80	16	87	42	0	0	57	0.98
35606156--35606224	36	2.0	36	83	11	90	42	0	0	57	0.98
35606156--35606226	29	2.4	30	82	11	94	42	0	0	57	0.98
35607024--35607094	5	14.6	5	80	16	87	42	0	0	57	0.98
35607024--35607092	36	2.0	36	83	11	90	42	0	0	57	0.98
35607024--35607094	29	2.4	30	82	11	94	42	0	0	57	0.98
35605432--35607172	868	2.0	868	99	0	3475	37	9	20	32	1.84
35607796--35607866	5	14.6	5	80	16	87	42	0	0	57	0.98
35607796--35607864	36	2.0	36	83	11	90	42	0	0	57	0.98
35607796--35607866	29	2.4	30	82	11	94	42	0	0	57	0.98
35606620--35608163	772	2.0	772	100	0	3088	45	6	16	31	1.73
35608526--35608575	17	2.9	17	77	11	57	40	2	0	58	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35608752--35608798	24	2.0	23	84	12	60	51	4	14	29	1.62
35609756--35609783	9	3.1	9	100	0	56	21	0	32	46	1.52
35615104--35615184	5	16.6	5	76	19	82	41	0	1	56	1.07
35615104--35615180	31	2.5	33	79	16	92	41	0	1	57	1.07
35615104--35615185	34	2.4	33	82	11	94	42	0	1	56	1.07
35615781--35615824	23	1.9	23	90	9	72	54	0	18	27	1.44
35616060--35616106	24	2.0	23	84	12	60	51	4	14	29	1.62
35616593--35616634	4	10.2	4	89	5	66	28	0	23	47	1.52
35621762--35621803	22	2.0	21	85	4	57	30	2	16	50	1.58
35621944--35621982	20	2.1	18	86	13	53	66	0	0	33	0.92
35624485--35625581	153	7.3	151	86	6	1437	51	7	9	31	1.62
35624476--35625566	444	2.4	452	88	5	1588	51	7	9	31	1.61
35627198--35627239	21	2.0	22	90	4	68	61	0	35	2	1.09
35630956--35631021	27	2.4	27	89	0	96	31	21	18	28	1.96
35631302--35631370	33	2.2	31	89	10	104	30	21	24	23	1.99
35637107--35637165	26	2.3	26	84	0	91	28	25	15	30	1.96
35643469--35643495	13	2.1	13	100	0	54	48	7	22	22	1.75
35650934--35650959	13	2.0	13	100	0	52	76	7	0	15	0.99
35650999--35651040	18	2.3	18	95	0	75	73	7	4	14	1.21
35655072--35655125	27	2.0	27	96	0	99	27	25	20	25	1.99
35657831--35657887	20	2.8	20	84	7	62	45	15	14	24	1.83
35671018--35671065	20	2.4	20	85	0	60	22	25	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35673744--35673801	18	3.2	18	85	0	71	65	3	18	12	1.39
35673765--35673845	30	2.7	29	75	11	83	60	1	25	12	1.39
35673795--35673834	18	2.2	18	86	0	53	62	0	27	10	1.27
35686490--35686674	40	4.7	40	82	7	209	23	23	27	25	2.00
35686542--35686707	79	2.1	79	82	6	203	25	21	27	25	1.99
35692548--35692597	18	2.5	20	81	15	59	14	40	26	20	1.90
35694045--35694078	18	1.9	18	88	5	52	29	14	14	41	1.86
35695158--35695304	57	2.6	58	81	13	164	25	31	14	28	1.95
35695158--35695292	29	4.7	28	78	13	125	23	31	16	28	1.96
35695363--35695415	17	3.1	17	83	2	70	18	37	22	20	1.94
35705123--35705347	40	5.6	40	78	3	220	26	23	27	23	2.00
35714942--35715400	231	2.0	231	89	1	697	26	19	17	36	1.94
35726439--35726470	16	2.0	16	100	0	64	37	18	12	31	1.88
35727660--35727755	47	2.0	47	91	0	156	31	18	5	44	1.72
35730082--35730260	27	6.6	27	83	5	191	29	27	15	27	1.96
35730108--35730258	82	1.9	81	87	4	223	28	27	15	27	1.96
35730806--35730830	13	1.9	13	100	0	50	32	16	20	32	1.94
35734387--35734480	35	2.7	35	88	0	143	30	20	13	35	1.91
35737168--35737344	69	2.6	69	83	0	237	37	19	22	20	1.94
35745257--35745298	19	2.2	19	91	0	66	9	14	26	50	1.73
35749337--35750572	49	25.5	49	96	1	2126	31	6	31	30	1.84
35754682--35754715	8	4.4	8	92	3	52	2	20	11	64	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35757380--35757406	13	2.1	13	100	0	54	14	22	7	55	1.64
35761089--35761273	79	2.3	81	83	7	227	24	22	27	24	2.00
35761090--35761273	40	4.6	40	82	9	207	25	22	27	24	2.00
35761142--35761306	79	2.1	79	83	6	201	26	21	27	24	1.99
35768503--35768728	40	5.7	40	90	2	321	24	22	27	25	1.99
35771883--35772039	76	2.1	76	82	2	190	33	26	21	19	1.97
35772507--35772555	24	2.0	24	96	0	89	46	28	8	16	1.75
35773341--35773373	16	2.0	17	88	5	50	30	18	3	48	1.63
35773339--35773382	22	1.9	22	86	9	61	34	15	2	47	1.58
35773552--35773629	25	3.2	25	83	7	97	28	21	23	26	1.99
35783457--35783483	10	2.7	10	100	0	54	77	7	0	14	0.97
35784578--35784658	36	2.3	33	81	8	81	61	2	24	11	1.41
35808700--35808750	21	2.4	22	74	6	52	64	1	3	29	1.22
35809544--35809697	28	5.5	28	91	0	227	31	12	24	31	1.92
35810424--35810823	47	8.6	47	77	3	387	28	13	17	40	1.88
35810422--35810837	93	4.5	93	89	2	604	28	13	17	40	1.88
35810456--35810848	23	16.7	24	70	8	202	28	13	17	40	1.88
35811979--35812464	237	2.1	237	99	0	963	27	15	21	35	1.94
35816418--35816485	29	2.3	29	82	5	84	27	29	13	29	1.94
35816307--35816634	174	1.9	174	95	0	593	31	24	14	30	1.94
35816587--35816665	29	2.7	30	82	13	110	30	30	13	25	1.94
35822928--35822972	24	1.9	23	95	0	72	48	24	2	24	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35822918--35822974	24	2.5	21	76	17	60	45	26	3	24	1.69
35823883--35823986	42	2.5	42	93	0	172	28	25	16	29	1.97
35826739--35826806	29	2.3	29	80	5	75	29	32	11	26	1.92
35826909--35826987	29	2.7	30	80	13	101	29	30	16	24	1.96
35829438--35829562	28	4.5	28	89	0	178	32	11	24	32	1.90
35830289--35830686	23	17.1	22	69	18	130	27	13	18	39	1.89
35830287--35830670	47	8.3	47	79	4	413	28	14	19	38	1.90
35830340--35830585	23	10.8	22	69	20	132	26	14	19	39	1.90
35830297--35830686	93	4.2	93	94	1	658	27	13	18	39	1.89
35836014--35837730	859	2.0	859	99	0	3407	32	15	22	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126