genome.fa.s14.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  101  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30893693--30893735	22	2.0	21	82	17	52	34	0	20	44	1.52
30898665--30898773	56	1.9	56	98	0	209	32	12	33	22	1.92
30899562--30899793	21	10.8	22	76	7	210	48	24	0	26	1.54
30899578--30899624	15	3.2	15	74	17	53	51	27	0	21	1.48
30899569--30899793	43	5.2	43	77	11	210	48	24	0	26	1.54
30902957--30903489	126	4.3	126	86	2	718	29	22	17	30	1.97
30904861--30904898	15	2.5	16	83	12	53	34	0	5	60	1.19
30907038--30907177	43	3.3	43	81	4	149	32	14	21	32	1.93
30907015--30907177	87	1.9	87	85	10	226	30	14	22	32	1.93
30907038--30907222	85	2.1	87	80	7	209	32	15	21	31	1.94
30917804--30917833	2	15.0	2	100	0	60	50	0	0	50	1.00
30919625--30919700	7	10.7	7	80	16	77	42	1	1	55	1.16
30920421--30920467	24	2.0	24	84	16	62	31	0	17	51	1.46
30921231--30921305	36	2.1	36	94	0	132	30	28	18	22	1.97
30927055--30927456	201	2.0	201	96	0	732	30	18	21	29	1.97
30929308--30929355	3	16.3	3	79	12	55	27	2	0	70	0.98
30929308--30929370	6	10.2	6	81	13	56	23	3	0	73	0.98
30932883--30932910	4	7.0	4	100	0	56	25	0	0	75	0.81
30932966--30933340	89	4.2	89	100	0	750	36	17	16	29	1.92
30935540--30935639	50	2.0	50	96	0	182	23	15	23	39	1.92
30936060--30936087	4	7.0	4	100	0	56	75	0	0	25	0.81
30939562--30939613	23	2.3	22	75	21	54	9	23	1	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30940267--30940324	10	5.7	10	76	11	64	29	27	13	29	1.94
30940267--30940327	20	3.0	20	83	9	79	27	26	13	32	1.93
30942713--30943680	194	5.0	194	94	0	1695	35	21	14	29	1.93
30943558--30943802	122	2.0	122	88	3	368	38	16	14	30	1.88
30943364--30943996	316	2.0	316	93	1	1090	36	19	15	29	1.92
30943170--30944190	510	2.0	510	92	1	1688	35	20	15	28	1.93
30942976--30944384	704	2.0	704	91	1	2290	35	20	15	28	1.93
30942782--30944578	898	2.0	898	93	1	3046	35	20	15	28	1.93
30943680--30945063	194	7.1	194	93	1	2251	34	20	16	28	1.94
30947769--30947808	18	2.2	18	86	4	53	12	27	0	60	1.33
30948871--30949306	14	31.1	14	100	0	872	21	14	0	64	1.28
30949983--30950034	23	2.3	22	75	21	54	9	23	1	65	1.32
30953303--30953398	6	15.7	6	67	11	52	71	3	17	7	1.22
30953303--30953351	18	2.8	17	80	17	64	75	6	12	6	1.17
30953359--30953396	13	2.8	13	82	17	51	73	0	18	7	1.06
30953360--30953410	21	2.4	21	74	6	50	74	1	17	5	1.11
30953413--30953474	33	1.9	32	83	9	81	56	6	25	11	1.58
30956225--30956350	63	2.0	63	96	0	234	33	26	20	19	1.96
30962150--30962182	14	2.3	15	89	5	50	27	12	33	27	1.92
30963509--30963696	88	2.1	88	92	0	304	27	25	24	22	2.00
30963557--30963695	44	3.2	44	63	4	109	26	23	25	24	2.00
30963715--30964076	88	4.2	88	82	7	416	26	27	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30964062--30964185	44	2.8	44	83	6	144	28	18	24	29	1.98
30964549--30964976	44	9.9	43	70	10	237	29	20	22	27	1.99
30964534--30964973	217	2.0	218	90	0	693	29	20	23	26	1.99
30964555--30965020	217	2.1	217	86	1	639	30	20	22	27	1.98
30965512--30966372	19	45.4	19	84	1	335	34	10	18	37	1.85
30965533--30966366	38	21.9	38	98	1	1618	34	10	18	36	1.85
30976620--30976749	43	3.0	43	87	1	161	22	16	31	29	1.96
30977074--30977242	56	3.1	58	77	18	159	45	15	2	36	1.60
30977140--30977223	9	9.6	9	84	7	93	48	17	0	33	1.48
30977084--30977223	65	2.2	61	88	7	201	46	16	1	35	1.56
30977149--30977248	43	2.3	42	88	6	139	50	15	0	35	1.44
30977210--30977274	25	2.7	25	83	6	73	55	7	3	33	1.44
30982783--30982911	66	2.0	65	83	6	161	42	17	26	13	1.86
30983210--30983306	43	2.3	43	83	3	115	28	21	23	25	1.99
30988820--30988964	72	2.0	72	98	0	281	48	15	6	29	1.71
30991860--30991897	16	2.2	18	86	9	53	28	21	0	50	1.49
30992876--30993004	62	2.1	62	91	0	204	24	17	13	42	1.86
30993197--30993258	20	3.1	20	95	0	106	41	14	8	35	1.75
30996628--30996666	19	2.1	19	85	9	53	35	12	10	41	1.77
30997604--30997644	22	1.9	21	85	14	57	63	7	19	9	1.48
31000567--31000608	20	2.1	20	100	0	84	54	19	14	11	1.70
31004643--31004685	21	2.0	21	100	0	86	34	23	23	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31004551--31004767	113	1.9	113	84	5	287	35	25	15	22	1.94
31004664--31004933	92	2.9	91	78	4	285	35	24	13	25	1.93
31009754--31009812	16	3.6	16	73	20	50	8	11	1	77	1.05
31009745--31009787	21	2.0	21	82	8	52	9	11	0	79	0.95
31009748--31009812	6	10.8	6	82	9	62	7	12	1	78	1.02
31012828--31012867	12	3.1	12	86	13	53	10	12	0	77	0.99
31012825--31012891	15	4.4	14	75	20	55	7	14	1	76	1.08
31017053--31017358	92	3.3	91	84	1	405	33	26	14	25	1.94
31033106--31033157	23	2.3	20	78	18	50	59	3	3	32	1.33
31033115--31033161	21	2.1	23	85	14	64	63	2	4	29	1.25
31037417--31037456	17	2.4	17	95	0	71	17	37	22	22	1.94
31037916--31037966	25	2.0	25	84	3	66	13	27	35	23	1.93
31040257--31040305	20	2.5	19	80	9	53	51	2	8	38	1.43
31042074--31042217	25	5.9	25	74	5	116	31	22	26	19	1.97
31042174--31042219	24	1.9	24	86	0	65	30	28	28	13	1.94
31042154--31042290	72	1.9	73	81	4	170	30	23	26	19	1.98
31042766--31042809	5	8.6	5	85	5	61	40	18	0	40	1.50
31050577--31050632	4	14.0	4	78	14	62	75	3	0	21	0.96
31050577--31050632	22	2.5	22	88	5	78	75	3	0	21	0.96
31050572--31050627	18	3.2	18	82	10	71	76	3	0	19	0.93
31051086--31051125	19	2.2	19	90	4	64	77	5	0	17	0.94
31051220--31051337	60	2.0	60	100	0	236	29	24	11	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31056799--31056853	24	2.3	24	81	6	67	34	9	20	36	1.84
31056847--31056919	24	3.0	24	86	7	96	28	5	15	50	1.66
31056995--31057057	27	2.4	27	85	15	87	19	25	22	33	1.97
31057013--31057065	27	2.0	27	81	7	63	24	24	20	30	1.99
31058714--31058780	27	2.5	27	90	0	107	37	19	19	23	1.94
31077981--31078011	16	1.9	16	93	0	53	3	22	6	67	1.28
31081361--31081540	39	4.6	39	85	0	216	30	3	21	44	1.68
31082261--31082355	42	2.3	42	90	0	154	30	15	18	34	1.93
31082288--31082356	20	3.3	20	69	15	59	28	14	18	37	1.91
31084484--31084630	73	2.0	73	93	2	251	37	23	13	25	1.92
31094477--31094501	11	2.3	11	100	0	50	72	0	0	28	0.86
31094640--31094677	18	2.1	19	85	14	53	36	2	23	36	1.69
31098923--31098961	15	2.6	15	83	0	51	51	0	2	46	1.14
31102877--31102913	18	2.1	18	94	0	65	45	2	10	40	1.53
31104985--31105065	3	26.0	3	74	18	60	69	2	2	25	1.14
31104989--31105065	30	2.6	28	75	18	68	70	2	2	24	1.13
31104989--31105065	19	4.0	20	69	17	65	70	2	2	24	1.13
31128207--31128280	27	2.7	27	87	0	94	33	12	24	29	1.91
31131452--31131487	6	6.0	6	86	0	54	38	0	11	50	1.38
31131452--31131487	18	2.0	18	100	0	72	38	0	11	50	1.38
31132223--31132259	8	4.6	8	87	12	58	10	0	0	89	0.49
31132223--31132259	16	2.4	15	95	4	65	10	0	0	89	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31132842--31132883	22	1.9	22	85	9	59	30	2	0	66	1.04
31144750--31144848	45	2.2	45	81	0	117	28	20	27	24	1.99
31145190--31145287	44	2.2	45	88	1	144	30	15	27	26	1.96
31145748--31145835	44	2.0	44	86	0	122	38	29	15	15	1.89
31146377--31146406	8	3.9	8	91	8	53	10	0	0	90	0.47
31146378--31146406	15	1.9	15	100	0	58	10	0	0	89	0.48
31146979--31147020	22	1.9	22	85	9	59	30	2	0	66	1.04
31146951--31147017	33	2.0	33	83	16	86	29	4	0	65	1.12
31146950--31147018	30	2.2	34	78	19	78	31	4	0	63	1.14
31148129--31148269	75	1.9	75	80	5	169	32	5	17	44	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126