genome.fa.s14.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  5  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1235110--1235288	59	3.0	59	99	0	349	35	16	24	23	1.95
1235814--1235870	23	2.5	23	91	0	87	21	29	24	24	1.99
1238758--1238828	35	2.0	35	86	2	97	35	9	11	43	1.74
1246984--1247026	12	3.6	12	77	0	50	48	18	0	32	1.48
1247132--1247161	4	7.5	4	100	0	60	26	0	23	50	1.50
1249746--1249788	20	2.2	20	91	0	68	30	16	0	53	1.43
1249753--1249799	20	2.3	20	85	3	58	29	21	0	48	1.50
1257226--1257335	55	2.0	55	98	0	211	40	25	7	26	1.81
1258333--1258364	17	1.9	16	93	6	55	65	6	18	9	1.42
1262786--1262820	17	2.0	18	88	5	54	40	2	8	48	1.49
1262780--1262821	17	2.5	17	77	14	50	42	2	11	42	1.54
1266969--1267017	9	5.4	9	80	0	53	69	0	4	26	1.06
1266953--1267010	18	2.9	19	80	12	64	67	0	5	27	1.12
1266953--1267017	18	3.5	18	79	10	60	67	0	4	27	1.10
1266970--1267021	18	2.9	17	83	13	61	67	0	3	28	1.08
1266971--1267081	45	2.5	45	79	8	111	62	2	5	29	1.31
1275429--1275544	51	2.2	52	80	4	128	38	14	6	39	1.73
1280383--1280498	37	3.2	37	64	18	98	30	22	23	24	1.99
1280353--1280496	72	2.0	72	95	0	261	30	21	22	25	1.99
1280852--1280890	12	3.2	12	85	0	51	53	10	0	35	1.35
1281668--1281717	13	3.3	15	76	18	50	50	0	2	48	1.12
1282417--1282474	17	3.2	17	79	16	55	48	0	27	24	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1284008--1284130	51	2.4	51	86	4	160	28	30	15	25	1.96
1285027--1285146	3	39.7	3	73	9	84	60	4	4	31	1.35
1285022--1285107	24	3.7	24	83	7	106	61	2	3	32	1.25
1287220--1287285	28	2.4	28	94	2	116	37	10	0	51	1.37
1289812--1289912	51	2.0	51	86	3	141	35	16	6	40	1.76
1290860--1291157	124	2.4	127	80	3	316	23	4	23	47	1.69
1297313--1297354	17	2.5	17	80	7	50	35	4	2	57	1.33
1301268--1301309	22	2.0	22	86	13	61	38	21	2	38	1.67
1311390--1311417	12	2.3	12	100	0	56	32	0	0	67	0.91
1312789--1312861	37	1.9	39	83	5	96	56	0	1	42	1.08
1313220--1313279	14	4.3	14	79	14	61	55	1	0	43	1.10
1327104--1327211	54	2.0	54	94	0	189	36	16	9	37	1.81
1332178--1332273	10	10.0	10	70	17	53	39	2	0	58	1.10
1332167--1332233	29	2.4	28	85	5	89	35	1	0	62	1.04
1332199--1332301	17	5.9	17	67	17	59	37	0	0	61	1.03
1332176--1332248	29	2.5	29	86	4	94	36	2	0	60	1.11
1332164--1332273	38	2.9	37	87	10	161	36	1	0	61	1.06
1332252--1332301	22	2.3	21	80	10	55	44	0	0	56	0.99
1332164--1332289	38	3.3	38	82	10	150	34	1	0	63	1.04
1332542--1332578	14	2.8	14	88	8	51	32	0	21	45	1.52
1334842--1334907	9	7.4	9	86	3	98	39	24	12	24	1.89
1338747--1338870	34	3.7	33	74	19	121	34	0	16	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1338933--1339330	126	3.2	122	82	6	465	37	17	16	28	1.92
1341908--1341955	25	1.9	25	87	8	71	58	4	0	37	1.18
1341905--1341960	25	2.3	24	79	11	69	51	3	0	44	1.18
1342390--1342432	18	2.4	18	84	0	59	44	9	25	20	1.81
1348944--1349018	29	2.6	29	85	8	98	37	9	4	49	1.54
1348945--1349088	31	4.7	31	72	13	106	37	11	5	45	1.64
1366715--1366763	25	2.0	25	100	0	98	51	4	24	20	1.65
1367839--1367863	13	1.9	13	100	0	50	40	48	0	12	1.40
1367896--1367967	6	11.7	6	92	5	117	66	15	0	18	1.25
1368007--1368046	9	4.4	9	90	0	62	25	10	25	40	1.86
1368007--1368046	18	2.2	18	100	0	80	25	10	25	40	1.86
1368424--1368465	6	7.0	6	100	0	84	50	0	0	50	1.00
1368474--1368510	16	2.2	17	90	4	58	24	0	2	72	0.97
1368547--1368595	23	2.2	22	82	10	55	30	0	4	65	1.11
1377883--1377918	17	2.1	18	94	5	65	50	16	22	11	1.77
1380015--1380064	3	16.7	3	79	8	57	30	6	2	62	1.31
1380432--1380466	18	1.9	18	88	0	52	37	8	2	51	1.47
1380496--1380555	24	2.5	24	74	12	61	38	6	5	50	1.51
1382719--1382776	10	5.7	10	76	11	64	29	27	13	29	1.94
1382719--1382779	20	3.0	20	83	9	79	27	26	13	32	1.93
1398916--1398965	12	3.9	13	75	12	50	36	24	6	34	1.80
1407476--1407550	31	2.4	31	82	6	89	36	10	6	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1410092--1411213	561	2.0	561	99	0	2235	35	11	16	36	1.84
1413478--1413536	29	1.9	30	86	10	84	44	1	0	54	1.10
1413492--1413552	10	5.9	10	73	19	54	52	0	0	47	1.00
1417208--1417248	19	2.2	19	90	0	64	39	2	0	58	1.11
1417711--1417798	39	2.3	39	86	5	117	32	19	30	17	1.94
1422781--1422821	16	2.6	16	82	14	50	36	14	4	43	1.67
1428444--1428621	89	2.0	89	98	0	347	41	28	10	20	1.84
1430262--1430327	31	2.1	31	94	0	114	33	12	12	42	1.79
1431122--1431158	19	2.0	19	89	5	58	54	0	18	27	1.44
1431184--1431225	21	2.0	21	81	9	50	50	2	7	40	1.43
1438362--1438519	79	2.0	79	94	0	280	29	23	10	36	1.89
1445082--1445147	31	2.1	31	94	0	114	33	12	12	42	1.79
1450911--1450951	21	2.0	21	90	0	64	29	21	29	19	1.98
1459113--1459175	19	3.3	19	68	0	63	41	9	3	46	1.52
1459210--1459244	17	2.0	17	88	5	52	48	0	17	34	1.47
1459688--1459747	27	2.3	27	82	2	68	55	1	3	40	1.27
1461973--1462035	19	3.3	19	68	0	63	41	9	3	46	1.52
1462070--1462104	17	2.0	17	88	5	52	48	0	17	34	1.47
1462537--1462596	27	2.3	27	82	2	68	55	1	3	40	1.27
1477678--1477704	14	1.9	14	100	0	54	22	0	11	66	1.22
1479162--1479195	16	2.2	15	94	5	59	23	2	5	67	1.26
1481204--1481264	29	2.1	28	85	11	79	62	0	8	29	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1483090--1483157	34	2.0	34	85	2	93	45	0	1	52	1.09
1483369--1483421	21	2.5	21	84	0	61	33	33	5	26	1.80
1485567--1485594	13	2.2	13	100	0	56	32	32	7	28	1.84
1488551--1488590	17	2.3	18	80	20	50	35	2	0	62	1.09
1494077--1494118	20	2.3	17	84	15	57	54	14	2	28	1.52
1501714--1501773	31	1.9	31	83	6	77	15	11	8	65	1.47
1501872--1501928	8	6.6	8	78	9	51	66	1	1	29	1.12
1501875--1501940	18	3.6	17	76	13	69	62	3	1	33	1.20
1501875--1501930	9	6.2	9	80	12	62	64	1	1	32	1.14
1505033--1505072	3	13.3	3	100	0	80	32	0	0	67	0.91
1505971--1506004	17	2.0	17	88	0	50	35	0	5	58	1.22
1509858--1509905	25	2.0	24	91	4	78	41	18	25	14	1.88
1509854--1509932	24	3.2	25	80	7	90	40	16	25	17	1.90
1509981--1510029	26	1.9	25	87	4	71	34	20	26	18	1.95
1511488--1511592	37	2.8	37	98	0	201	23	19	26	30	1.98
1511556--1511612	23	2.5	23	91	0	96	24	21	24	29	1.99
1513318--1513361	20	2.1	21	84	12	56	29	18	4	47	1.68
1518470--1518509	17	2.4	17	86	0	53	52	2	5	40	1.37
1521430--1521508	31	2.5	31	87	8	106	60	1	5	32	1.26
1521456--1521517	30	2.0	31	78	15	65	59	1	1	37	1.17
1521562--1521597	18	2.0	18	88	0	54	5	33	33	27	1.80
1523189--1523476	5	57.6	5	100	0	576	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1525399--1525436	3	12.7	3	100	0	76	34	0	0	65	0.93
1525577--1525604	6	4.7	6	100	0	56	85	0	0	14	0.59
1526040--1526068	14	2.1	14	93	6	51	37	0	0	62	0.96
1526614--1526649	19	1.9	18	88	5	54	36	2	0	61	1.11
1526750--1526774	3	8.3	3	100	0	50	68	0	32	0	0.90
1528182--1528209	3	9.3	3	100	0	56	32	0	0	67	0.91
1531298--1531350	17	3.4	16	75	21	58	24	13	1	60	1.43
1531848--1531896	22	2.2	22	82	10	55	48	6	4	40	1.47
1532813--1532841	14	2.1	14	93	6	51	37	0	0	62	0.96
1532791--1532934	69	2.1	70	81	6	168	38	2	2	57	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126