genome.fa.s14.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  66  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19473108--19473156	25	2.0	25	83	0	62	32	14	16	36	1.89
19476799--19476940	41	3.5	41	84	1	169	22	28	19	29	1.98
19476799--19476957	41	3.9	41	83	6	162	23	28	19	28	1.98
19476839--19476972	41	3.3	41	84	4	137	25	27	20	26	1.99
19476799--19476968	82	2.1	82	80	4	182	24	27	18	29	1.98
19481154--19481398	122	2.0	122	99	0	481	38	13	21	26	1.90
19486207--19486390	47	3.9	47	93	1	296	30	10	32	26	1.90
19495031--19495344	44	7.1	44	87	2	452	25	24	21	28	1.99
19499588--19499659	22	3.0	25	69	19	80	45	15	9	29	1.78
19499522--19499856	47	7.1	47	88	2	406	43	17	13	25	1.85
19499541--19499718	25	7.5	24	68	17	79	43	17	12	25	1.85
19500843--19500940	28	3.6	26	86	9	133	29	26	12	31	1.92
19504704--19504967	40	6.7	40	89	5	360	25	27	21	25	1.99
19530010--19530191	44	4.1	44	89	1	285	25	24	22	26	2.00
19534288--19534431	39	3.6	41	79	15	160	25	22	27	24	2.00
19558475--19558662	26	7.2	25	76	12	139	19	14	33	32	1.92
19558487--19558662	52	3.4	52	82	6	198	20	14	33	31	1.92
19558491--19558663	78	2.2	78	85	2	231	20	14	32	32	1.92
19559533--19559601	34	2.0	34	100	0	138	40	8	17	33	1.80
19565204--19565233	16	1.9	16	93	6	53	50	20	0	30	1.49
19570459--19570531	26	2.8	26	82	0	74	38	12	19	30	1.88
19573422--19573472	20	2.6	19	90	6	75	11	35	1	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19582419--19582463	18	2.5	18	96	0	81	37	0	0	62	0.96
19583970--19584044	37	2.0	37	84	5	98	26	29	20	24	1.99
19584169--19584294	47	2.7	47	87	0	171	27	31	8	31	1.87
19584275--19584375	17	6.2	17	73	19	90	30	32	3	32	1.76
19584228--19584422	64	3.0	64	99	0	381	30	30	6	32	1.82
19584356--19584548	47	4.1	47	95	0	350	29	29	8	32	1.87
19586372--19586402	8	4.0	8	91	8	55	12	0	0	87	0.55
19586373--19586402	15	2.0	15	100	0	60	13	0	0	86	0.57
19604523--19604563	20	2.0	20	85	0	55	43	21	12	21	1.85
19612493--19612525	17	1.9	17	93	0	57	33	24	6	36	1.80
19614906--19615150	121	2.0	121	98	0	472	41	17	9	31	1.81
19621156--19621340	79	2.3	82	83	7	229	24	27	22	24	2.00
19621137--19621340	40	5.1	40	81	8	229	24	27	22	25	2.00
19629120--19629304	79	2.3	82	82	7	220	24	27	23	24	2.00
19629101--19629304	40	5.1	40	80	8	220	24	27	23	25	2.00
19635647--19635789	51	2.8	51	85	4	182	33	25	16	23	1.96
19641284--19641379	31	3.1	31	95	3	174	31	9	13	45	1.75
19641681--19641714	4	9.0	4	93	6	54	26	0	0	73	0.83
19641904--19641997	44	2.1	44	96	3	172	67	10	13	8	1.43
19647516--19647611	31	3.1	31	95	3	174	31	9	13	45	1.75
19652555--19652592	17	2.2	18	85	4	51	57	13	0	28	1.36
19664770--19665013	118	2.1	118	96	0	443	26	19	15	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19665811--19665853	18	2.4	18	80	7	52	25	30	16	27	1.97
19673755--19673810	29	1.9	29	86	13	80	66	3	3	26	1.25
19674526--19674589	31	2.1	31	93	0	110	28	14	9	48	1.74
19675320--19675367	15	3.3	14	77	8	51	52	2	0	45	1.12
19683427--19683537	58	1.9	58	92	3	188	54	15	10	19	1.70
19685925--19685973	3	17.0	3	87	8	57	28	0	6	65	1.16
19688430--19688607	27	6.6	27	84	3	205	29	28	15	26	1.96
19688451--19688606	82	1.9	81	88	3	233	29	28	15	26	1.96
19690306--19691876	787	2.0	787	95	0	2793	26	25	18	30	1.98
19697339--19697523	40	4.7	40	80	6	207	24	27	22	24	2.00
19697339--19697521	79	2.3	81	81	7	205	24	27	22	25	2.00
19703883--19704025	51	2.8	51	85	4	182	33	25	16	23	1.96
19709520--19709615	31	3.1	31	95	3	174	31	9	13	45	1.75
19709917--19709950	4	9.0	4	93	6	54	26	0	0	73	0.83
19710140--19710233	44	2.1	44	96	3	172	67	10	13	8	1.43
19715752--19715847	31	3.1	31	95	3	174	31	9	13	45	1.75
19720791--19720828	17	2.2	18	85	4	51	57	13	0	28	1.36
19729992--19730047	26	2.2	26	84	9	71	35	19	25	19	1.95
19730678--19730715	20	2.0	20	84	5	51	36	10	2	50	1.51
19733203--19733258	25	2.2	26	93	6	96	42	17	7	32	1.77
19733489--19733763	41	6.7	41	88	0	397	24	28	18	28	1.98
19733493--19733763	82	3.3	82	91	2	454	23	28	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19740726--19741323	47	12.6	47	89	2	779	32	8	29	29	1.87
19740726--19741323	96	6.3	96	91	3	919	32	8	29	29	1.87
19740726--19741323	143	4.2	144	90	3	915	32	8	29	29	1.87
19742877--19743163	41	7.0	41	89	0	430	23	28	18	29	1.98
19754588--19754657	35	2.0	35	100	0	140	14	22	11	51	1.74
19757739--19757855	62	1.9	61	82	5	148	50	4	2	42	1.35
19757840--19757894	25	2.2	25	81	12	60	49	5	1	43	1.36
19759321--19759351	16	1.9	16	93	0	53	70	6	12	9	1.31
19771867--19772004	66	2.1	66	91	0	222	31	15	28	23	1.95
19778482--19778725	118	2.1	118	96	0	443	26	19	15	38	1.91
19779523--19779565	18	2.4	18	80	7	52	25	30	16	27	1.97
19784614--19784641	1	28.0	1	100	0	56	0	100	0	0	0.00
19787458--19787513	29	1.9	29	86	13	80	66	3	3	26	1.25
19788229--19788292	31	2.1	31	93	0	110	28	14	9	48	1.74
19789023--19789070	15	3.3	14	77	8	51	52	2	0	45	1.12
19797130--19797240	58	1.9	58	92	3	188	54	15	10	19	1.70
19799628--19799676	3	17.0	3	87	8	57	28	0	6	65	1.16
19802133--19802310	27	6.6	27	84	3	205	29	28	15	26	1.96
19802154--19802309	82	1.9	81	88	3	233	29	28	15	26	1.96
19810196--19810373	27	6.6	27	84	3	205	29	28	15	26	1.96
19810217--19810372	82	1.9	81	88	3	233	29	28	15	26	1.96
19815707--19815997	50	5.7	50	80	2	260	21	27	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19823736--19823911	77	2.3	79	85	4	223	30	21	27	21	1.98
19823737--19823901	39	4.2	39	83	3	206	28	21	28	21	1.99
19829956--19830178	79	2.8	78	82	9	265	24	27	22	25	2.00
19829956--19830178	39	5.7	40	86	8	266	24	27	22	25	2.00
19837947--19838131	79	2.3	82	82	7	220	24	27	22	25	2.00
19837947--19838131	40	4.7	40	81	7	216	24	27	22	25	2.00
19852219--19852259	14	2.9	14	96	0	73	19	14	4	60	1.51
19857720--19857833	45	2.6	44	83	4	122	45	14	16	23	1.84
19861491--19862815	672	2.0	672	98	0	2580	25	17	16	40	1.90
19872307--19872432	50	2.5	50	75	5	130	35	22	14	27	1.93
19878838--19879340	40	12.6	40	93	0	790	17	32	18	32	1.94
19883183--19883249	26	2.5	26	78	2	71	22	29	19	28	1.98
19887326--19887395	25	2.8	25	73	16	72	30	21	20	28	1.98
19895430--19895602	50	3.5	49	79	5	152	28	24	26	20	1.99
19920671--19921030	29	12.7	27	72	8	93	26	16	20	36	1.94
19920703--19920985	29	9.9	28	76	7	180	26	15	20	37	1.92
19922739--19922768	12	2.5	12	94	0	51	6	30	40	23	1.80
19923727--19923827	19	5.2	19	64	13	53	34	19	31	13	1.91
19923721--19923837	39	3.0	39	82	0	153	32	19	33	14	1.92
19931051--19931083	10	3.1	11	86	8	50	0	21	0	78	0.75
19931050--19931079	13	2.2	14	94	5	53	0	20	0	80	0.72
19932057--19932109	26	2.0	26	82	10	63	37	7	3	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19932454--19932498	3	15.0	3	86	9	65	66	2	0	31	1.04
19936329--19936361	17	1.9	17	93	0	57	36	9	3	51	1.49
19949003--19949075	23	3.2	22	68	14	58	34	27	17	20	1.95
19948986--19949096	46	2.4	46	86	0	159	33	29	18	18	1.95
19949011--19949084	23	3.2	23	68	21	64	31	32	17	18	1.95
19953872--19953957	9	9.4	9	69	14	52	32	1	2	63	1.14
19956198--19956305	1	108.0	1	100	0	216	100	0	0	0	0.00
19962169--19962351	79	2.3	81	83	7	223	24	22	27	24	2.00
19962170--19962353	40	4.6	40	82	9	207	24	22	28	24	2.00
19962222--19962386	79	2.1	79	83	6	201	26	21	27	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126