genome.fa.s14.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  95  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28889747--28889867	44	2.8	44	83	2	145	32	20	19	28	1.97
28889838--28889975	73	1.9	73	83	5	181	27	23	24	24	2.00
28889953--28890085	44	3.0	44	84	2	160	33	18	18	28	1.95
28890119--28890548	225	1.9	223	81	3	524	33	16	21	28	1.96
28890471--28890584	44	2.6	45	78	12	128	28	21	21	28	1.99
28890688--28890923	88	2.7	88	81	7	271	27	23	23	25	2.00
28890665--28890923	89	2.9	89	79	7	274	28	23	23	24	2.00
28890933--28891346	131	3.1	130	85	1	549	29	20	24	26	1.99
28891630--28891660	14	2.2	14	94	0	53	70	16	0	12	1.16
28891773--28891830	19	2.7	22	84	10	68	36	8	17	37	1.80
28897020--28897114	47	2.0	47	97	0	181	26	7	34	31	1.84
28900963--28901019	3	18.7	3	78	10	53	33	8	0	57	1.29
28903197--28903295	52	2.0	48	82	7	117	27	14	17	41	1.87
28914637--28914676	20	2.0	20	95	0	71	32	25	12	30	1.92
28922818--28923264	231	1.9	231	99	0	885	29	19	24	26	1.99
28926492--28926590	52	2.0	48	82	7	117	27	14	17	41	1.87
28935158--28935185	5	5.6	5	100	0	56	82	0	0	17	0.68
28937569--28937881	113	2.8	113	87	2	425	34	16	22	27	1.95
28939061--28939153	21	4.4	21	88	0	132	35	18	44	2	1.62
28939583--28939745	85	1.9	84	88	1	245	25	20	22	31	1.98
28939583--28939747	42	3.9	42	90	1	240	24	20	21	32	1.98
28941769--28941825	27	2.1	27	83	6	71	52	1	12	33	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28941968--28942017	20	2.6	19	78	6	55	28	0	10	62	1.27
28944108--28944132	12	2.1	12	100	0	50	76	8	8	8	1.18
28946758--28946787	15	2.0	15	93	0	51	46	3	6	43	1.46
28949956--28950010	24	2.3	24	84	3	67	58	3	0	38	1.16
28950261--28950313	21	2.5	21	100	0	106	28	43	9	18	1.81
28950595--28950713	57	2.1	58	85	3	159	40	15	21	23	1.90
28966467--28966519	25	2.2	26	83	10	67	43	1	0	54	1.11
28966474--28966525	21	2.4	21	87	9	70	46	1	0	51	1.12
28967406--28967547	25	5.7	25	70	12	103	36	22	15	25	1.93
28967399--28967549	50	3.0	50	86	0	203	37	21	15	25	1.92
28970105--28970146	15	2.7	16	82	14	52	52	2	0	45	1.13
28970114--28970155	15	2.9	15	82	10	52	52	0	0	47	1.00
28970617--28971548	19	48.7	21	88	1	329	39	13	7	39	1.73
28970617--28970674	22	2.6	22	81	7	64	41	17	5	36	1.72
28970653--28971554	38	23.7	38	99	0	1795	39	13	7	39	1.73
28971890--28974300	132	18.3	132	96	0	4342	28	23	18	28	1.98
28972947--28973318	88	4.2	88	63	13	215	28	23	18	29	1.98
28973852--28974159	44	7.0	45	62	17	108	28	23	18	29	1.98
28979774--28979807	4	8.2	4	87	6	50	73	0	2	23	0.97
28979774--28979809	13	2.8	13	91	4	56	72	0	2	25	0.98
28989547--28989675	64	2.0	64	92	3	215	32	11	29	26	1.91
28990472--28990736	140	1.9	140	99	0	521	24	16	26	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28991003--28991226	58	3.9	58	84	3	256	35	8	19	37	1.81
28991289--28991574	69	4.1	69	77	3	245	18	21	24	34	1.96
29003361--29003386	2	13.0	2	100	0	52	50	50	0	0	1.00
29004458--29004495	2	19.0	2	88	0	58	47	2	2	47	1.30
29007245--29007286	17	2.4	17	84	11	50	71	0	16	11	1.14
29009533--29009581	22	2.4	22	80	19	61	16	12	14	57	1.66
29010130--29010177	23	2.1	23	88	7	71	52	16	2	29	1.56
29012606--29012666	24	2.6	24	94	5	108	54	0	16	29	1.43
29014852--29014993	68	2.1	68	87	0	203	34	16	24	23	1.95
29021187--29021239	25	2.2	24	82	3	61	33	20	24	20	1.97
29021224--29021376	64	2.4	64	91	0	243	37	21	16	24	1.94
29025799--29025833	13	2.7	13	86	0	52	80	8	0	11	0.92
29030982--29031021	19	2.1	19	100	0	80	22	5	25	47	1.71
29035434--29035491	10	5.8	10	76	13	57	27	3	20	48	1.66
29035462--29035500	19	2.1	19	100	0	78	23	5	25	46	1.73
29037123--29037185	24	2.6	24	80	9	74	39	11	15	33	1.83
29037306--29037675	54	6.9	54	82	4	390	38	13	21	25	1.91
29037330--29037674	161	2.1	162	84	2	460	38	14	22	24	1.91
29046569--29046617	24	2.1	24	84	3	64	40	10	16	32	1.82
29046649--29046748	22	4.4	22	75	10	85	34	9	18	39	1.82
29046660--29046752	46	2.0	46	87	0	132	35	10	17	36	1.84
29046652--29046748	23	4.3	23	75	6	81	32	9	18	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29046660--29046770	46	2.4	46	82	8	120	35	10	18	36	1.85
29046798--29047147	54	6.5	54	84	1	380	39	13	21	24	1.90
29046798--29047090	161	1.8	162	88	0	453	38	14	22	24	1.91
29046799--29047144	161	2.1	162	84	1	444	39	13	21	25	1.90
29048124--29048166	22	1.9	23	85	4	61	58	0	18	23	1.40
29057130--29057212	42	2.0	41	95	0	139	26	28	16	26	1.97
29064380--29064732	87	4.1	87	98	0	670	26	11	26	36	1.90
29066290--29066635	114	3.0	114	97	0	649	39	14	8	37	1.77
29067715--29067774	30	2.0	31	86	3	86	40	0	40	20	1.52
29067910--29067950	20	2.0	21	85	9	57	43	0	29	26	1.55
29067988--29068015	9	3.1	9	100	0	56	32	10	10	46	1.73
29068207--29068317	31	3.7	30	78	8	100	33	10	14	41	1.80
29072751--29072810	29	2.0	29	87	9	86	53	5	1	40	1.33
29072750--29072818	29	2.4	29	81	11	72	57	4	1	36	1.27
29096768--29096958	36	5.0	36	79	12	211	28	20	13	37	1.90
29096840--29096994	46	3.6	46	76	16	186	28	21	12	36	1.91
29096804--29096994	82	2.3	82	92	0	310	28	21	12	37	1.89
29096742--29096953	118	1.8	117	94	1	379	29	19	13	36	1.91
29099279--29099426	73	2.0	73	90	0	233	20	19	14	44	1.86
29100481--29100553	37	2.0	37	97	0	137	32	4	17	45	1.68
29102246--29102293	16	3.1	15	90	6	69	64	2	2	31	1.16
29102242--29102293	8	6.5	8	82	8	61	65	1	1	30	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29102241--29102297	24	2.4	24	79	5	71	64	1	3	29	1.20
29115359--29115505	30	4.9	29	85	2	170	21	4	46	27	1.69
29123591--29123616	13	2.0	13	100	0	52	53	7	7	30	1.57
29124129--29124190	29	2.2	28	88	8	90	37	29	22	11	1.89
29128682--29128720	16	2.5	16	80	19	55	69	0	25	5	1.09
29132889--29132951	18	3.5	18	85	8	76	63	9	1	25	1.34
29132976--29133019	18	2.4	18	84	0	52	50	2	0	47	1.13
29133194--29133223	11	2.7	11	100	0	60	10	0	20	70	1.16
29148837--29148966	50	2.5	52	77	6	140	33	13	13	38	1.85
29150147--29150179	17	2.0	17	88	5	50	54	0	12	33	1.37
29151412--29151464	21	2.5	21	93	0	88	15	18	41	24	1.89
29152908--29153139	70	3.3	70	88	1	322	29	18	23	28	1.98
29152931--29153036	34	3.1	34	71	10	106	30	18	23	27	1.98
29157349--29157380	15	2.1	16	94	5	57	46	0	9	43	1.35
29157512--29157648	25	5.7	25	80	10	137	18	23	18	40	1.91
29164146--29164176	16	1.9	16	93	0	53	9	9	9	70	1.33
29169175--29169211	18	2.1	18	89	0	56	13	16	29	40	1.86
29170076--29170122	21	2.2	22	92	3	78	21	38	19	21	1.94
29176801--29176891	22	4.0	22	69	10	76	41	2	1	54	1.19
29176803--29176894	45	2.0	45	81	8	107	42	2	1	54	1.19
29200388--29200427	20	2.0	20	100	0	80	35	0	10	55	1.34
29201736--29201765	12	2.5	12	94	0	51	53	0	10	36	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29203004--29203148	23	6.3	23	88	3	220	30	24	22	22	1.99
29203004--29203147	69	2.1	69	94	0	252	30	25	22	22	1.99
29207336--29207394	3	20.0	3	85	3	75	32	5	1	61	1.28
29208073--29208351	110	2.6	109	91	1	452	31	16	19	32	1.94
29211137--29211178	22	2.0	21	85	4	57	69	0	7	23	1.13
29219128--29219156	8	3.8	8	90	9	51	65	0	0	34	0.93
29220689--29220793	52	2.0	52	98	0	201	32	13	29	24	1.93
29224263--29224331	28	2.5	27	77	13	70	63	0	0	36	0.94
29232984--29233051	34	2.0	33	97	2	127	54	0	23	20	1.44
29232987--29233059	34	2.4	29	84	15	87	57	0	24	16	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126