genome.fa.s14.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  25  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7173138--7173163	13	2.0	13	100	0	52	61	0	15	23	1.33
7174450--7174662	107	2.0	107	88	3	322	29	18	25	26	1.98
7174349--7174794	239	1.9	239	86	3	648	29	18	24	28	1.98
7174561--7174807	132	1.9	132	95	0	449	29	18	24	27	1.98
7174810--7175422	44	13.9	43	85	4	728	31	14	24	29	1.94
7174840--7175422	221	2.6	219	87	4	823	31	14	24	29	1.94
7174801--7175422	265	2.3	265	90	1	962	31	14	24	29	1.94
7177193--7177253	18	3.3	18	77	8	68	37	9	1	50	1.45
7177197--7177258	20	3.2	20	81	6	74	38	9	1	50	1.45
7179995--7180068	3	24.7	3	87	0	103	33	5	0	60	1.19
7180201--7180239	16	2.4	16	95	0	69	35	0	2	61	1.10
7185210--7185243	16	2.1	16	89	10	52	88	11	0	0	0.52
7185216--7185240	13	1.9	13	100	0	50	88	12	0	0	0.53
7185974--7186015	19	2.3	19	91	4	68	78	0	21	0	0.75
7185977--7186015	14	2.8	14	88	11	62	76	0	23	0	0.78
7187302--7188451	50	23.1	49	70	13	374	34	22	20	22	1.97
7187290--7188471	99	11.9	99	88	1	1650	34	22	20	22	1.97
7187290--7188471	199	5.9	199	90	1	1796	34	22	20	22	1.97
7189918--7189994	3	25.7	3	95	0	136	35	1	0	63	1.03
7190129--7190167	16	2.5	16	91	4	62	38	0	2	58	1.12
7193790--7193838	9	5.2	9	83	13	64	65	2	0	32	1.04
7193788--7193838	18	2.7	20	80	20	72	64	1	0	33	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7193788--7193840	19	2.8	18	81	18	72	66	1	0	32	1.03
7193971--7194019	18	2.7	18	78	15	55	63	0	0	36	0.95
7193990--7194019	14	2.1	14	93	0	51	70	0	0	30	0.88
7195245--7195613	83	4.4	84	68	13	247	28	22	21	26	1.99
7195328--7195776	44	10.6	43	67	16	195	27	23	21	27	1.99
7195244--7195782	127	4.2	127	92	0	882	27	23	22	27	1.99
7195504--7195692	40	4.6	40	73	11	121	28	22	24	24	1.99
7195371--7195732	83	4.3	83	70	12	245	28	23	22	25	1.99
7215262--7215386	56	2.2	57	86	2	180	45	2	3	48	1.31
7215318--7215378	24	2.5	25	79	12	65	40	1	3	54	1.27
7219970--7220110	6	22.8	6	67	11	61	31	2	5	59	1.35
7219970--7220090	37	3.3	36	80	7	120	32	3	4	60	1.32
7220538--7220765	126	1.8	126	95	0	411	29	15	22	32	1.95
7223485--7223722	116	2.1	116	93	0	404	42	9	11	37	1.73
7223729--7223971	29	8.5	29	91	3	404	27	0	27	44	1.54
7224905--7224936	7	4.6	7	100	0	64	59	12	0	28	1.34
7228371--7228486	51	2.3	51	98	0	223	44	0	27	27	1.54
7228461--7228531	22	3.2	22	88	9	101	45	0	32	22	1.53
7239286--7239412	59	2.1	60	84	7	161	7	8	18	65	1.43
7247438--7247474	7	5.3	7	100	0	74	27	0	0	72	0.84
7249401--7249444	20	2.3	19	84	4	52	27	27	2	43	1.67
7250739--7250775	14	2.4	17	82	17	53	62	5	0	32	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7253241--7253351	56	2.0	55	82	5	134	31	6	15	46	1.70
7253374--7253995	31	20.3	31	71	14	407	31	6	17	44	1.74
7253320--7253952	92	6.9	92	88	1	878	31	6	18	43	1.75
7253373--7253995	61	10.2	58	75	11	362	31	6	17	43	1.74
7255154--7255244	41	2.2	41	96	0	164	29	37	9	23	1.87
7258799--7258823	12	2.1	12	100	0	50	12	8	8	72	1.29
7265291--7265334	11	3.9	11	90	3	70	22	31	0	45	1.53
7265291--7265334	22	2.0	23	95	4	81	22	31	0	45	1.53
7265963--7266000	12	3.2	12	88	0	58	10	5	13	71	1.30
7265938--7266000	23	2.7	24	85	2	74	7	9	15	66	1.42
7265947--7266000	24	2.3	23	87	3	72	9	7	14	68	1.38
7265947--7266000	12	4.6	12	83	4	56	9	7	14	68	1.38
7278794--7278828	16	2.2	16	89	0	52	51	8	5	34	1.56
7278965--7279020	19	2.9	19	86	7	69	37	0	7	55	1.27
7285678--7286065	194	2.0	194	85	2	528	27	20	12	39	1.89
7286556--7286603	24	2.0	24	88	8	71	60	10	2	27	1.41
7288075--7288172	23	4.3	23	90	2	162	31	26	21	20	1.98
7288082--7288170	45	2.0	45	95	0	160	31	26	22	19	1.97
7290653--7290713	23	2.7	23	82	12	72	27	3	6	62	1.36
7293168--7293228	23	2.7	23	82	12	72	27	3	6	62	1.36
7296770--7296836	29	2.3	28	80	12	73	34	7	1	56	1.36
7300177--7300216	20	2.0	20	85	9	55	70	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7304428--7304477	21	2.3	22	82	3	66	32	0	0	68	0.90
7304480--7304521	21	1.9	21	85	9	57	73	11	0	14	1.09
7304490--7304537	22	2.2	21	85	7	60	70	8	4	16	1.27
7305772--7305829	25	2.3	24	80	13	64	50	1	3	44	1.29
7306288--7306333	19	2.4	19	81	0	56	73	0	15	10	1.08
7308594--7308627	15	2.3	15	89	0	50	52	0	17	29	1.45
7309636--7309963	163	2.0	162	93	0	566	41	11	15	31	1.83
7311355--7311417	33	1.9	33	90	0	99	20	31	20	26	1.98
7311355--7311432	33	2.4	33	84	0	93	17	33	20	28	1.96
7314233--7314388	42	3.7	42	77	16	169	30	26	18	24	1.98
7316664--7316702	18	2.2	17	86	13	53	33	0	20	46	1.51
7316863--7316931	23	3.0	23	89	0	111	21	18	26	33	1.97
7323373--7323631	101	2.6	98	78	9	263	25	14	28	31	1.95
7323407--7323629	51	4.4	50	81	10	231	24	16	27	31	1.96
7328057--7328225	54	3.1	54	92	0	293	28	17	20	33	1.96
7336818--7336854	3	12.3	3	100	0	74	67	0	0	32	0.91
7340684--7340745	10	6.1	10	74	22	58	45	3	0	51	1.17
7340681--7340744	20	3.2	20	79	16	87	42	3	0	54	1.16
7348998--7349064	34	1.9	35	87	3	100	46	13	8	31	1.74
7349361--7349396	18	2.0	18	88	0	54	2	36	5	55	1.38
7350923--7350997	31	2.4	31	93	0	132	41	20	16	22	1.90
7352656--7352685	15	2.0	15	93	0	51	13	16	3	66	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7356574--7356611	18	2.1	18	85	14	51	52	2	0	44	1.14
7368198--7368311	53	2.1	53	95	1	201	39	8	35	16	1.80
7372229--7372704	238	2.0	238	99	0	943	31	17	20	30	1.96
7375111--7375757	44	14.8	44	71	13	415	29	21	23	25	1.99
7375283--7375757	89	5.4	87	71	16	320	28	21	24	25	1.99
7375290--7375576	133	2.2	133	92	0	475	28	21	25	24	1.99
7375290--7375622	133	2.5	132	86	5	440	28	21	25	24	1.99
7375420--7375884	217	2.1	217	89	0	714	29	20	23	26	1.99
7375109--7375792	350	2.0	348	89	1	1037	29	21	23	26	1.99
7378065--7378858	397	2.0	395	94	3	1409	30	13	15	39	1.86
7380272--7380402	67	2.0	67	89	6	203	22	16	32	29	1.95
7386099--7386139	12	3.3	12	83	6	55	46	9	7	36	1.65
7388147--7388612	44	10.6	44	63	11	166	27	25	19	27	1.99
7387953--7389211	132	9.5	132	90	2	1644	28	24	19	27	1.99
7387958--7389238	529	2.4	527	86	4	1679	28	24	19	27	1.99
7397113--7397183	23	3.0	23	81	10	81	46	1	2	49	1.25
7397116--7397193	23	3.2	23	80	12	77	47	1	3	47	1.28
7397176--7397295	59	2.1	59	88	1	188	41	4	9	45	1.55
7397940--7398008	16	4.2	16	92	3	120	26	0	36	37	1.57
7397940--7398008	33	2.1	32	94	2	120	26	0	36	37	1.57
7398224--7398278	15	3.4	16	80	16	53	50	1	0	47	1.11
7398244--7398278	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7398192--7398761	120	4.8	115	83	9	471	51	3	1	42	1.30
7398364--7398519	18	8.0	18	67	24	77	53	1	1	42	1.19
7398430--7398472	22	1.9	23	85	4	61	60	2	0	37	1.10
7398334--7398761	120	3.5	120	95	1	748	53	3	1	41	1.27
7398885--7398963	25	3.3	25	79	16	112	40	7	17	34	1.78
7406382--7407255	290	3.0	290	95	0	1568	26	15	25	32	1.96
7412867--7413205	41	8.2	41	90	1	475	23	26	20	28	1.99
7413803--7414183	78	4.9	78	88	6	528	43	14	3	37	1.65
7420645--7420921	46	6.0	46	92	0	419	36	8	25	29	1.86
7420645--7420921	138	2.0	138	93	0	473	36	8	25	29	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126