genome.fa.s14.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  76  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22797414--22797465	21	2.6	20	80	17	63	36	0	3	59	1.16
22798392--22798421	4	7.5	4	100	0	60	26	50	0	23	1.50
22798999--22799032	16	2.1	16	100	0	68	44	8	23	23	1.81
22799563--22799592	4	7.5	4	100	0	60	26	50	0	23	1.50
22800170--22800203	16	2.1	16	100	0	68	44	8	23	23	1.81
22800375--22800530	56	2.8	55	81	10	176	52	2	2	42	1.28
22810261--22810289	12	2.4	12	100	0	58	51	24	10	13	1.72
22824777--22824829	24	2.4	23	81	12	58	15	5	5	73	1.21
22827516--22827612	51	1.9	51	97	0	185	31	34	2	31	1.70
22829403--22829580	29	6.1	28	79	7	135	37	14	25	22	1.92
22829374--22829565	58	3.3	58	70	11	185	37	11	26	23	1.90
22829374--22829563	87	2.2	87	86	3	258	37	12	26	24	1.90
22829337--22829579	116	2.1	117	86	2	337	36	13	25	23	1.93
22833723--22833753	8	3.8	8	95	4	53	45	25	0	29	1.54
22838197--22838243	16	2.9	16	81	6	51	68	4	8	19	1.33
22838788--22838837	21	2.3	22	86	3	66	34	12	4	50	1.58
22844578--22844756	50	3.5	50	87	4	250	27	19	29	22	1.98
22844720--22844792	36	2.0	36	92	5	121	26	21	31	20	1.98
22844758--22844855	51	1.9	51	83	6	128	27	23	29	19	1.98
22844673--22844843	86	2.0	87	89	5	267	27	22	30	19	1.98
22848192--22848221	15	2.0	15	93	0	51	20	20	10	50	1.76
22849936--22850114	42	4.3	42	91	0	268	35	22	20	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22864855--22865146	27	10.8	27	79	4	277	41	20	16	21	1.90
22864855--22865132	81	3.4	81	86	2	371	42	20	16	21	1.89
22864855--22865135	54	5.2	54	85	0	382	41	20	16	21	1.90
22867552--22867617	26	2.6	25	83	9	71	30	24	22	22	1.99
22876485--22876512	14	2.0	14	100	0	56	35	7	0	57	1.26
22879888--22879971	42	2.0	42	95	0	150	20	13	27	39	1.89
22886811--22886849	18	2.1	18	85	9	51	25	5	12	56	1.57
22898441--22898508	26	2.6	26	90	0	109	22	16	19	42	1.89
22898493--22898601	55	2.0	54	82	10	132	24	12	23	38	1.90
22900194--22900288	28	3.4	28	86	2	138	29	23	23	24	1.99
22900393--22900498	26	4.1	25	76	4	104	40	22	19	16	1.91
22900399--22900501	52	2.0	52	90	0	161	39	22	21	16	1.92
22900677--22900844	27	6.3	27	80	8	137	20	15	20	43	1.88
22900682--22900835	54	2.9	53	83	6	168	20	15	19	44	1.87
22900682--22900844	81	2.0	80	83	5	204	20	15	19	44	1.87
22904724--22904809	30	2.9	30	79	6	95	27	24	9	38	1.86
22905275--22905319	20	2.2	20	80	0	54	31	8	13	46	1.74
22907485--22907911	213	2.0	213	100	0	854	30	18	11	39	1.86
22914025--22914086	26	2.4	26	86	0	79	38	16	12	32	1.86
22920817--22920868	24	2.2	24	85	0	68	34	1	5	57	1.33
22922732--22922784	24	2.2	24	89	0	79	35	3	7	52	1.48
22923450--22923500	23	2.2	23	89	6	77	50	23	9	15	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22924554--22924663	11	10.4	11	70	21	58	35	2	0	61	1.10
22924597--22924627	12	2.6	12	100	0	62	41	6	0	51	1.27
22924597--22924663	11	6.4	11	78	15	63	37	2	0	59	1.13
22924647--22924685	20	2.0	20	89	0	60	38	0	0	61	0.96
22924646--22924699	20	2.6	19	80	16	54	38	0	3	57	1.17
22930210--22930260	23	2.2	23	79	6	59	49	19	11	19	1.79
22930293--22930347	20	2.8	20	80	2	76	63	16	12	7	1.50
22932724--22932929	75	2.8	73	86	4	277	44	6	7	42	1.57
22932815--22932862	7	6.9	7	79	15	55	43	0	4	52	1.20
22933644--22933760	58	2.0	59	81	1	137	33	11	16	38	1.85
22941812--22941922	43	2.6	44	81	12	140	22	19	27	30	1.98
22942348--22942393	22	2.1	22	91	0	74	30	13	15	41	1.85
22948915--22949043	43	3.0	42	81	13	154	21	20	27	30	1.98
22950747--22950779	6	5.5	6	92	0	57	15	18	12	54	1.71
22955678--22955715	19	2.1	18	85	14	51	36	2	5	55	1.37
22963759--22963791	18	1.9	17	88	11	50	30	0	12	57	1.35
22969981--22970034	5	10.4	5	80	13	56	20	3	0	75	0.95
22969981--22970041	17	3.8	16	79	14	72	21	3	0	75	0.94
22969988--22970038	9	5.8	9	80	17	54	21	3	0	74	0.98
22969998--22970041	12	3.5	13	87	12	65	22	4	0	72	1.02
22970196--22970255	22	2.8	21	79	5	57	25	46	10	18	1.79
22971163--22971351	101	1.8	100	81	7	227	28	15	24	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22971339--22971412	20	3.8	19	77	13	62	79	1	5	13	0.96
22971342--22971392	23	2.2	23	83	13	61	78	1	1	17	0.94
22971357--22971405	16	3.2	16	85	5	57	81	2	6	10	0.94
22971390--22971421	6	5.3	6	100	0	64	84	0	15	0	0.63
22971975--22972009	15	2.4	15	90	4	54	48	0	8	42	1.33
22975222--22975370	79	1.9	79	88	2	228	40	12	17	30	1.86
22975903--22975961	24	2.4	24	86	8	75	37	18	22	22	1.94
22978088--22978191	52	2.0	52	94	1	183	32	13	7	46	1.72
22978088--22978212	52	2.4	52	86	6	148	30	12	9	48	1.72
22988292--22988342	24	2.2	24	77	22	56	33	0	5	60	1.21
22988500--22988566	34	1.9	35	84	3	91	46	11	10	31	1.75
22990903--22990959	26	2.2	26	93	0	96	45	14	31	8	1.75
22997687--22997722	18	2.1	18	89	5	56	16	33	25	25	1.96
23000971--23001031	19	3.3	19	72	21	65	62	4	3	29	1.32
23000976--23001037	17	3.5	17	72	20	63	62	4	4	27	1.36
23000969--23001043	37	2.0	37	97	0	141	62	5	4	28	1.35
23001830--23002023	28	7.0	28	82	4	196	26	18	8	46	1.77
23001837--23002051	83	2.6	83	80	8	240	26	16	8	48	1.75
23001847--23002043	55	3.6	55	78	8	222	26	17	8	48	1.75
23002435--23002500	21	3.1	21	66	12	53	24	22	16	36	1.94
23014710--23014738	12	2.3	13	94	5	51	20	6	6	65	1.40
23021290--23021348	31	1.9	30	83	10	75	40	6	15	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23026054--23026117	3	21.3	3	76	17	53	29	1	3	65	1.17
23026231--23026274	17	2.6	17	85	3	63	40	11	0	47	1.39
23031449--23031481	14	2.3	15	89	5	50	27	12	33	27	1.92
23032822--23033557	88	8.4	88	81	2	791	26	25	24	23	2.00
23032950--23033108	44	3.6	44	69	18	116	27	23	25	23	2.00
23032823--23033587	176	4.4	175	84	2	890	27	24	24	23	2.00
23032824--23033395	263	2.2	264	89	2	846	27	25	25	22	2.00
23032871--23033557	351	2.0	352	84	2	923	26	25	25	23	2.00
23033584--23033695	50	2.2	50	80	4	127	27	23	18	30	1.98
23047916--23047949	18	2.0	16	88	11	50	47	0	8	44	1.34
23062029--23062053	13	1.9	13	100	0	50	24	16	28	32	1.96
23065266--23065305	17	2.4	16	83	4	53	22	12	5	60	1.52
23065263--23065304	16	2.4	18	88	7	61	21	14	4	59	1.53
23068633--23068702	20	3.6	18	81	12	68	47	1	1	50	1.19
23068648--23068715	20	3.4	19	90	8	100	50	1	1	47	1.19
23069024--23069075	7	7.6	7	79	12	54	67	0	21	11	1.22
23078805--23078855	23	2.1	24	82	7	59	31	1	13	52	1.51
23085528--23085560	17	1.9	17	100	0	66	24	24	12	39	1.89
23088992--23089026	14	2.5	14	95	0	61	11	8	5	74	1.22
23090077--23090249	93	1.9	93	100	0	346	35	19	15	30	1.92
23090597--23090625	11	2.7	11	94	5	51	34	10	24	31	1.89
23091136--23091201	21	2.9	23	68	21	57	31	16	9	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23091149--23091219	21	3.2	20	73	21	54	29	19	9	40	1.84
23091546--23091584	19	2.1	19	100	0	78	48	10	10	30	1.70
23092958--23092998	20	2.0	20	85	0	55	34	7	9	48	1.64
23094694--23094734	10	4.1	10	87	0	55	65	2	4	26	1.25
23094694--23094742	11	4.6	11	82	14	59	61	2	8	28	1.36
23094699--23094737	20	2.0	20	94	0	69	69	2	2	25	1.14
23095963--23096005	17	2.6	17	96	3	79	79	0	16	4	0.90
23096040--23096086	18	2.5	20	80	13	64	68	0	23	8	1.17
23096043--23096083	19	2.2	19	86	8	57	68	0	21	9	1.18
23098437--23098488	27	1.9	27	92	0	86	42	15	21	21	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126