genome.fa.s14.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  98  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29909149--29909190	15	2.7	16	82	14	52	45	0	2	52	1.13
29909140--29909181	15	2.9	15	82	10	52	47	0	0	52	1.00
29908998--29909432	137	3.0	136	86	9	516	47	5	2	44	1.40
29909112--29909439	156	2.1	156	96	0	602	47	5	3	43	1.42
29909292--29909326	18	2.0	17	88	5	52	45	0	0	54	0.99
29909472--29909581	45	2.6	41	78	8	107	33	28	5	32	1.80
29909562--29909597	16	2.2	16	100	0	72	38	36	0	25	1.56
29911567--29911642	35	2.2	35	87	0	107	30	23	21	25	1.99
29922932--29922979	3	15.7	3	78	4	51	39	4	0	56	1.19
29922938--29922979	12	3.4	12	86	3	57	40	2	0	57	1.12
29923325--29923934	153	4.0	152	83	8	731	43	4	10	41	1.57
29923485--29923934	158	3.0	142	78	11	481	42	4	10	43	1.57
29923674--29923938	143	1.8	143	83	4	345	38	5	10	45	1.61
29923647--29923956	144	2.2	143	79	5	331	40	4	10	44	1.59
29937604--29937672	33	2.1	33	91	0	111	26	28	8	36	1.86
29938567--29938606	14	2.9	14	84	0	53	32	7	17	42	1.77
29938575--29938641	35	1.9	35	87	3	100	31	10	13	44	1.77
29938590--29938629	20	2.0	20	85	0	53	27	12	12	47	1.77
29946203--29946258	25	2.3	23	88	8	85	48	0	0	51	1.00
29949330--29949387	30	1.9	30	100	0	116	25	13	20	39	1.90
29949678--29949826	74	2.0	74	98	0	289	32	24	17	25	1.97
29950882--29950925	18	2.4	18	88	0	61	36	0	61	2	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29951509--29951540	15	2.1	15	100	0	64	28	12	31	28	1.93
29951622--29951778	77	2.0	77	96	0	287	28	7	22	41	1.80
29961642--29961690	21	2.3	21	85	3	62	44	28	10	16	1.80
29961653--29961692	21	1.9	21	94	0	71	42	30	12	15	1.83
29962101--29962149	21	2.4	21	80	12	59	73	2	2	22	1.04
29962753--29962786	11	3.0	11	95	4	59	70	0	0	29	0.87
29965354--29965480	30	4.3	30	81	2	148	37	17	4	40	1.70
29965354--29965480	59	2.1	60	82	7	152	37	17	4	40	1.70
29965726--29965852	30	4.3	30	81	2	148	37	17	4	40	1.70
29965114--29965859	372	2.0	372	99	0	1476	35	14	12	37	1.84
29965726--29965852	59	2.1	60	82	7	152	37	17	4	40	1.70
29966632--29966675	17	2.7	17	86	10	65	52	2	0	45	1.13
29966639--29966682	17	2.5	17	85	14	63	54	0	0	45	0.99
29968921--29969303	122	3.0	125	89	6	515	40	14	16	28	1.87
29980142--29980194	25	2.1	25	96	0	97	28	13	22	35	1.92
29997634--29997660	7	3.9	7	100	0	54	29	11	14	44	1.80
30003131--30003259	10	13.4	10	71	18	71	59	2	3	34	1.26
30006019--30006051	16	2.0	17	94	5	59	36	3	0	60	1.12
30006899--30006960	24	2.6	22	78	14	70	35	0	1	62	1.05
30010526--30010590	16	4.1	16	73	9	62	41	4	23	30	1.74
30012133--30012207	20	3.8	20	77	10	66	69	1	1	28	1.05
30012154--30012217	19	3.3	19	80	2	65	68	3	1	26	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30012154--30012217	29	2.2	28	83	8	83	68	3	1	26	1.13
30012480--30012504	12	2.1	12	100	0	50	24	0	0	76	0.80
30012491--30012564	28	2.6	29	87	8	107	35	0	1	63	1.03
30015667--30015772	54	2.0	54	98	0	203	33	18	17	29	1.95
30019952--30020015	29	2.2	30	86	8	87	39	0	0	60	0.97
30021171--30021272	45	2.3	45	94	0	186	46	20	10	22	1.82
30029751--30030248	45	11.1	45	89	1	687	27	18	26	27	1.98
30029751--30030148	179	2.2	180	92	0	681	27	16	26	29	1.97
30029751--30030164	224	1.8	224	92	0	693	28	16	26	28	1.97
30029751--30030248	134	3.7	134	86	2	651	27	18	26	27	1.98
30029751--30030248	179	2.8	178	84	3	658	27	18	26	27	1.98
30029750--30030241	224	2.2	224	85	2	684	27	18	26	27	1.98
30038185--30038281	3	32.3	3	100	0	194	67	0	0	32	0.91
30039325--30039368	23	2.0	22	81	4	52	68	6	2	22	1.25
30041967--30042035	26	2.6	27	72	4	70	17	26	21	34	1.95
30042017--30042063	23	2.0	23	83	0	58	14	23	23	38	1.92
30042002--30042142	74	1.9	73	80	9	162	20	24	21	34	1.97
30050011--30050063	23	2.2	25	83	6	65	22	26	18	32	1.97
30051506--30051536	13	2.4	13	100	0	62	25	45	22	6	1.76
30057944--30057974	16	2.0	15	93	6	53	58	0	0	41	0.98
30064260--30064449	96	2.0	97	91	1	310	35	8	19	36	1.82
30066815--30066848	18	1.9	18	88	5	52	35	2	5	55	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30066816--30066905	44	2.0	44	89	0	135	35	8	5	50	1.57
30074981--30075133	12	12.8	12	65	20	54	54	2	1	40	1.25
30074933--30075082	17	8.7	18	67	25	60	50	4	2	42	1.34
30076602--30076650	20	2.4	21	83	10	66	26	14	18	40	1.89
30077150--30077187	19	2.0	19	100	0	76	31	5	21	42	1.75
30084329--30084524	101	1.9	101	94	0	347	40	8	17	33	1.80
30095302--30095433	22	6.0	22	64	13	56	12	23	21	42	1.87
30098576--30098689	39	2.9	39	86	2	149	37	31	14	16	1.88
30103606--30103840	45	5.3	45	79	8	230	23	25	20	30	1.99
30103592--30103877	90	3.2	89	84	5	355	23	23	22	31	1.99
30103592--30103870	45	6.3	45	78	5	217	22	22	22	31	1.98
30105114--30105192	30	2.6	30	91	2	122	37	5	10	46	1.60
30105480--30105514	18	1.9	18	94	0	61	45	2	2	48	1.32
30106869--30106928	24	2.3	27	80	8	72	28	16	3	51	1.60
30107416--30107468	16	3.7	16	82	14	55	50	0	5	43	1.25
30107435--30107468	4	9.0	4	87	12	54	52	0	0	47	1.00
30107763--30107823	26	2.3	26	82	5	68	40	3	9	45	1.53
30115595--30115652	23	2.5	24	86	11	84	18	10	29	41	1.84
30123885--30123949	5	12.6	5	72	18	53	75	1	3	20	1.02
30123874--30123950	15	4.8	15	77	9	73	74	1	3	20	1.06
30128207--30128459	27	9.4	27	84	3	258	42	18	15	22	1.88
30128203--30128459	54	4.8	54	81	6	306	42	18	15	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30128237--30128488	81	3.1	78	73	8	227	41	18	15	25	1.89
30128833--30128900	28	2.4	27	80	7	82	22	23	23	30	1.99
30137215--30137274	30	2.0	30	96	0	111	38	16	31	13	1.87
30141296--30141341	21	2.2	21	88	3	67	67	0	0	32	0.91
30146786--30146870	21	4.2	20	75	11	75	42	3	1	52	1.26
30146793--30146870	10	7.6	10	71	9	59	39	3	1	55	1.26
30152086--30152167	27	3.0	27	83	3	112	17	21	36	24	1.94
30152234--30152270	18	2.1	18	94	0	65	67	2	29	0	1.04
30152223--30152276	22	2.4	23	76	20	60	68	1	27	1	1.10
30155262--30155303	22	1.9	22	100	0	84	50	7	0	42	1.30
30157376--30157457	38	2.2	38	93	0	137	41	2	2	53	1.27
30157491--30157612	60	2.0	60	85	3	165	54	14	0	30	1.47
30157653--30157935	19	15.2	19	69	20	145	54	12	1	31	1.44
30157653--30157802	27	6.1	27	79	17	168	53	13	0	32	1.45
30157600--30157781	50	3.7	49	81	6	228	52	14	1	32	1.49
30157847--30157933	20	4.2	21	82	11	108	58	10	2	28	1.43
30157776--30157962	61	3.1	60	70	9	164	55	12	1	31	1.44
30158002--30158027	12	2.2	12	100	0	52	46	15	0	38	1.46
30158107--30158144	3	13.3	3	83	10	53	0	36	0	63	0.95
30158103--30158144	14	3.1	14	90	10	61	0	35	0	64	0.94
30158108--30158153	11	4.3	11	83	13	51	0	39	0	60	0.97
30158110--30158156	14	3.6	13	80	16	53	0	38	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30158105--30158151	20	2.3	21	85	7	69	0	38	0	61	0.96
30166371--30166430	30	2.0	30	87	3	86	16	33	28	21	1.95
30167174--30167221	19	2.5	19	80	10	53	68	0	2	29	1.01
30176900--30176995	46	2.1	46	90	5	151	44	8	16	30	1.77
30180269--30180518	127	2.0	127	93	0	428	43	13	6	36	1.70
30181553--30181624	31	2.3	33	76	16	89	45	2	0	51	1.15
30181569--30181621	10	5.1	10	80	19	56	39	3	0	56	1.17
30181569--30181615	21	2.3	20	89	10	69	38	4	0	57	1.18
30189406--30189491	6	14.7	6	84	7	61	68	10	6	13	1.38
30189388--30189493	40	2.5	43	76	13	112	69	9	7	13	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126