Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  126  of  126  ( 15042 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39275520--39275586
20
3.3
20
89
4
100
23
29
17
28
1.97
39275673--39275746
28
2.7
28
83
6
80
29
6
10
52
1.62
39275706--39275762
28
2.0
28
86
6
80
31
8
8
50
1.64
39276882--39276907
10
2.6
10
100
0
52
15
30
30
23
1.95
39278699--39278730
15
2.1
16
94
5
57
71
0
21
6
1.07
39283419--39283484
21
3.0
22
86
4
80
30
4
30
34
1.78
39292823--39292874
23
2.3
22
75
21
54
9
23
1
65
1.32
39295039--39295199
81
2.0
81
98
0
313
24
9
30
34
1.88
39298727--39298829
54
1.9
54
91
0
170
37
30
13
18
1.89
39301124--39301202
37
2.1
37
90
0
122
25
31
18
24
1.98
39301320--39301756
47
9.2
47
89
2
658
29
30
8
31
1.86
39301320--39301756
96
4.6
96
90
2
657
29
30
8
31
1.86
39301320--39301756
143
3.1
143
89
3
675
29
30
8
31
1.86
39307079--39307129
20
2.6
20
81
9
61
35
17
25
21
1.95
39308809--39308890
21
4.0
20
76
10
69
8
21
0
69
1.15
39311672--39311709
20
1.9
19
94
5
67
31
15
26
26
1.96
39317531--39318080
275
2.0
275
99
0
1082
20
17
18
43
1.88
39324701--39324747
10
4.8
10
84
10
53
14
2
2
80
0.89
39324704--39324752
19
2.6
19
80
0
62
16
4
2
77
1.01
39324702--39324747
9
4.8
9
84
10
56
13
2
2
82
0.85
39326528--39326571
22
2.0
22
90
0
70
25
34
4
36
1.76
39328649--39328683
16
2.2
17
90
10
56
57
8
0
34
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39329728--39329830
12
8.9
12
71
18
76
64
1
21
12
1.37
39329728--39329814
33
2.5
36
85
10
119
66
1
20
11
1.29
39334390--39334452
21
3.0
21
88
2
90
30
3
33
33
1.74
39344690--39344754
30
2.2
29
81
15
71
4
16
4
73
1.17
39344718--39344788
25
2.8
24
83
14
74
11
11
5
71
1.29
39349523--39349646
62
2.0
62
96
0
230
21
14
19
44
1.86
39361229--39361307
37
2.1
37
88
0
113
26
31
17
24
1.97
39361425--39361582
49
3.2
48
95
2
273
30
31
7
31
1.85
39366113--39366175
21
3.0
21
88
2
81
33
31
4
30
1.78
39371597--39371779
100
1.8
99
94
3
323
28
26
19
25
1.98
39371594--39371879
51
5.8
48
76
8
243
29
26
17
26
1.98
39371605--39371829
49
4.5
49
80
6
202
30
27
16
25
1.97
39374207--39374233
14
1.9
14
100
0
54
59
3
14
22
1.51
39375094--39375142
20
2.5
19
80
6
53
69
2
22
6
1.21
39376900--39377075
42
4.0
42
78
12
169
30
27
14
27
1.95
39376985--39377226
47
5.0
46
80
8
182
31
27
14
26
1.95
39377126--39377227
53
1.9
53
90
4
161
32
27
14
25
1.95
39382400--39382452
23
2.4
22
76
20
56
9
18
1
69
1.25
39382436--39382477
18
2.4
18
76
4
50
11
26
0
61
1.30
39382463--39382496
12
3.1
11
88
12
52
2
23
0
73
0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126

The End!