genome.fa.s14.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  49  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14236856--14236887	8	4.1	8	92	8	57	25	12	0	62	1.30
14236857--14236887	15	2.1	15	100	0	62	25	12	0	61	1.32
14243070--14243158	42	2.1	42	87	0	133	23	30	20	25	1.98
14249315--14249513	51	3.9	50	75	6	195	30	27	18	24	1.98
14249323--14249507	101	1.8	102	85	3	266	30	26	18	24	1.98
14251591--14251808	107	2.0	109	96	1	404	36	22	5	35	1.77
14252361--14252443	42	2.0	42	85	4	114	30	24	13	32	1.93
14255468--14255610	50	2.9	50	82	4	164	30	26	19	23	1.98
14259464--14259548	43	2.0	44	90	2	136	22	27	24	25	2.00
14266288--14266365	12	6.2	12	76	16	54	28	1	0	70	0.95
14266268--14266334	28	2.3	29	87	12	95	31	1	0	67	1.00
14273557--14273659	49	2.1	49	90	3	163	38	18	4	37	1.72
14280805--14280847	22	1.9	23	90	4	70	27	0	6	65	1.18
14290917--14290970	27	2.0	28	85	10	76	44	7	5	42	1.55
14297987--14298012	13	2.0	13	100	0	52	38	30	15	15	1.88
14299006--14299043	18	2.1	18	100	0	76	44	10	15	28	1.80
14302289--14302343	26	2.1	26	100	0	110	38	10	7	43	1.68
14303823--14303870	21	2.3	21	81	0	51	54	16	0	29	1.43
14310059--14310207	35	4.2	35	79	7	115	39	32	15	12	1.85
14312646--14312717	35	2.0	37	82	15	89	29	0	4	66	1.10
14317289--14317553	40	6.7	40	85	5	286	26	27	21	24	1.99
14317256--14317553	80	3.7	80	79	9	263	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14317485--14317562	40	1.9	41	82	10	97	26	28	20	24	1.99
14324215--14324254	9	4.4	9	93	0	71	25	10	22	42	1.84
14327049--14327109	31	2.0	32	90	6	99	21	45	1	31	1.61
14327651--14327687	19	1.9	19	100	0	74	29	5	32	32	1.80
14329549--14329587	19	2.1	19	95	0	69	28	12	30	28	1.93
14329499--14329706	69	3.0	69	97	0	380	26	19	31	23	1.98
14329618--14329656	19	2.1	19	95	0	69	28	12	30	28	1.93
14329640--14329769	50	2.6	50	87	0	179	27	20	28	23	1.99
14330447--14330501	28	2.0	28	100	0	110	36	3	21	38	1.71
14336803--14336827	12	2.1	12	100	0	50	24	16	24	36	1.94
14337071--14337121	18	2.8	19	80	17	63	25	0	3	70	1.04
14342903--14342959	25	2.3	25	93	0	96	64	7	5	22	1.38
14344042--14344072	8	3.9	8	100	0	62	38	12	9	38	1.77
14349424--14349489	20	3.3	20	93	4	107	65	4	0	30	1.13
14350287--14350509	73	3.1	73	82	0	277	34	18	21	26	1.96
14350461--14350560	51	1.9	52	93	2	175	39	14	19	28	1.90
14350514--14350779	71	3.7	71	93	1	442	36	18	20	24	1.95
14350692--14350869	90	2.0	90	97	0	338	32	19	24	23	1.98
14350621--14350940	161	2.0	160	90	3	509	32	19	23	24	1.97
14350784--14350946	71	2.3	73	89	4	242	31	18	23	25	1.97
14352117--14352586	147	3.2	147	79	3	396	26	14	21	37	1.92
14352212--14352586	146	2.6	146	79	4	391	27	14	21	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14353209--14353249	18	2.4	17	87	4	55	43	9	2	43	1.50
14353211--14353272	18	3.2	18	76	19	54	45	9	1	43	1.46
14353218--14353277	23	3.0	22	79	20	69	43	10	0	46	1.37
14353517--14353690	9	19.1	9	64	20	51	46	17	1	34	1.58
14353553--14353701	41	3.8	41	73	14	120	47	18	1	32	1.57
14353702--14354303	44	13.7	44	94	0	1055	49	15	2	32	1.57
14355951--14356021	21	3.4	21	92	0	115	32	14	49	4	1.62
14356370--14356596	43	5.2	43	79	3	222	28	17	28	25	1.98
14356390--14356596	88	2.4	86	85	1	270	29	17	27	25	1.98
14357252--14357300	20	2.5	20	90	6	73	10	38	16	34	1.82
14357383--14357428	8	5.9	8	81	18	53	65	0	34	0	0.93
14357366--14357428	21	3.0	21	78	19	62	66	0	31	1	1.01
14358291--14358422	55	2.5	54	89	6	198	39	13	9	37	1.77
14358260--14358427	52	3.1	55	83	5	218	33	15	11	39	1.83
14358682--14358720	16	2.4	16	91	0	60	38	2	2	56	1.27
14370840--14371126	143	2.0	143	83	8	368	47	11	17	22	1.81
14402074--14402257	50	3.7	50	81	3	203	22	27	22	27	1.99
14406262--14406471	40	5.3	40	92	0	314	24	20	28	26	1.99
14406209--14406471	80	3.3	80	85	2	316	24	20	27	26	1.99
14406209--14406471	120	2.2	120	83	3	325	24	20	27	26	1.99
14406262--14406506	80	3.1	80	85	2	253	25	20	28	25	1.99
14414212--14414421	40	5.3	40	92	0	305	23	20	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14423713--14423778	13	5.5	13	76	20	81	36	0	15	48	1.45
14423711--14423780	23	3.0	23	97	0	131	37	0	15	47	1.46
14424646--14424683	20	1.9	20	88	0	58	23	2	5	68	1.23
14429140--14429191	23	2.3	23	89	0	77	34	1	15	48	1.56
14429149--14429191	13	3.5	13	75	18	56	34	2	16	46	1.60
14429147--14429193	23	2.0	23	95	0	85	36	2	17	44	1.60
14430688--14430741	20	2.7	20	94	0	90	20	22	5	51	1.67
14431613--14431903	45	6.5	45	76	5	187	22	18	17	41	1.90
14431669--14431861	90	2.1	90	81	3	219	22	18	18	40	1.91
14431713--14431903	90	2.1	90	79	11	212	24	18	18	39	1.92
14452401--14452511	33	3.4	33	85	0	123	18	23	14	43	1.87
14452375--14452511	66	2.1	66	83	0	166	19	21	13	45	1.84
14454940--14455030	27	3.4	28	78	7	98	34	39	13	13	1.83
14454953--14455042	27	3.3	26	76	3	90	34	41	12	12	1.80
14456216--14456257	17	2.4	17	80	11	50	52	11	4	30	1.59
14456373--14456445	31	2.3	32	92	4	121	32	4	2	60	1.30
14456392--14456442	16	3.3	15	71	17	50	31	5	1	60	1.31
14460371--14460428	23	2.5	22	76	20	64	10	17	0	72	1.11
14460537--14460570	6	5.3	6	86	13	50	14	2	0	82	0.79
14461092--14461147	28	2.0	28	100	0	112	53	7	14	25	1.66
14461095--14461166	28	2.5	28	88	4	99	52	6	15	25	1.67
14464327--14464366	20	2.0	20	85	5	53	42	10	0	47	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14465848--14465875	12	2.3	12	100	0	56	39	32	0	28	1.57
14468175--14468264	39	2.3	40	84	7	121	20	23	27	28	1.99
14468913--14468972	24	2.5	24	86	2	86	43	16	11	28	1.83
14476317--14476363	10	4.6	10	85	12	51	59	6	0	34	1.23
14478373--14478486	62	1.9	59	85	5	156	48	5	4	42	1.45
14480225--14480252	14	2.0	14	100	0	56	50	0	7	42	1.30
14482449--14482475	4	6.8	4	100	0	54	0	22	0	77	0.76
14497240--14497913	335	2.0	335	100	0	1348	35	16	12	35	1.87
14498995--14500100	553	2.0	553	100	0	2212	23	19	19	38	1.94
14502676--14502706	11	2.8	11	95	0	53	22	0	45	32	1.53
14506320--14506563	50	4.9	50	85	0	290	26	21	29	22	1.99
14512976--14513014	17	2.3	17	95	0	69	25	25	12	35	1.92
14514415--14514473	12	4.8	12	73	17	50	67	1	0	30	1.00
14516472--14516528	20	2.8	19	78	19	62	36	10	3	49	1.55
14516475--14516528	19	2.7	19	81	18	65	35	11	3	50	1.56
14518576--14519001	213	2.0	213	99	0	843	31	15	19	33	1.93
14521758--14521782	13	1.9	13	100	0	50	32	4	24	40	1.73
14523678--14523942	27	9.8	27	90	0	368	28	22	9	39	1.85
14523678--14523942	81	3.3	81	92	0	422	28	22	9	39	1.85
14523934--14524140	27	7.7	27	88	2	281	42	21	6	29	1.78
14524182--14524398	27	8.0	27	86	1	292	34	20	21	23	1.97
14524601--14524669	24	2.8	25	93	2	113	26	24	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14524601--14524682	24	3.4	24	83	8	94	30	21	21	25	1.99
14525631--14525793	43	3.8	43	73	9	120	26	14	26	31	1.95
14526474--14526503	13	2.3	13	94	0	51	23	6	26	43	1.78
14528478--14528594	48	2.4	48	81	4	128	35	27	17	19	1.95
14536931--14537038	40	2.7	40	97	0	198	29	21	27	21	1.98
14546861--14547021	44	3.7	44	91	4	247	32	27	14	24	1.95
14550774--14550928	43	3.6	43	80	11	183	34	27	16	21	1.95
14556159--14556225	18	3.7	18	80	4	64	44	13	19	22	1.85
14556542--14556611	27	2.6	27	90	0	104	40	20	17	22	1.92
14561745--14561793	19	2.7	18	80	17	57	38	6	12	42	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126