genome.fa.s14.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  57  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16678393--16678419	9	3.0	9	100	0	54	22	0	0	77	0.76
16679813--16680176	23	15.5	23	73	10	220	40	18	14	26	1.89
16679913--16680178	47	5.7	47	77	4	250	41	18	14	26	1.88
16679827--16680129	70	4.3	70	89	2	439	40	19	13	26	1.88
16679827--16680129	141	2.2	139	87	3	437	40	19	13	26	1.88
16684385--16684436	21	2.6	21	85	8	65	76	1	0	21	0.87
16684409--16684436	6	4.7	6	100	0	56	85	0	0	14	0.59
16688846--16688878	14	2.3	15	89	5	50	30	12	0	57	1.35
16697384--16697417	17	2.1	16	88	5	50	70	0	14	14	1.17
16698624--16698667	17	2.5	18	77	3	54	4	6	9	79	1.04
16698895--16698932	12	3.0	13	84	7	51	63	0	0	36	0.95
16698896--16698936	13	3.2	13	86	6	57	65	0	0	34	0.93
16710572--16710614	21	2.0	22	86	4	61	41	11	2	44	1.53
16712605--16712699	21	4.6	21	68	19	65	54	1	0	44	1.07
16720158--16720223	29	2.3	28	80	12	80	27	3	1	68	1.13
16720160--16720204	22	2.0	22	86	0	63	24	2	2	71	1.09
16722759--16722905	62	2.4	62	85	4	190	29	24	21	25	1.99
16722860--16722903	23	1.9	23	90	0	70	29	27	22	20	1.99
16722995--16723150	42	3.7	41	86	1	186	37	19	11	31	1.87
16725010--16725182	95	1.8	94	85	6	242	41	2	15	41	1.59
16725214--16725630	126	3.3	126	97	0	762	31	20	22	26	1.98
16728554--16728601	23	2.1	23	84	0	60	41	35	4	18	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16729703--16729727	3	8.3	3	100	0	50	32	0	0	68	0.90
16731290--16731337	21	2.3	21	78	7	53	6	18	41	33	1.76
16731518--16731560	18	2.4	18	88	0	59	44	9	27	18	1.80
16732173--16732232	7	8.6	7	100	0	120	56	15	0	28	1.39
16732228--16732295	7	9.7	7	100	0	136	57	14	0	27	1.38
16732173--16732281	21	5.2	21	93	6	122	56	14	0	28	1.39
16733422--16733473	11	4.7	11	81	15	63	38	0	34	26	1.57
16733829--16733924	33	3.1	33	63	25	91	47	5	3	43	1.41
16738286--16738337	11	4.7	11	81	15	63	38	0	34	26	1.57
16738693--16738788	33	3.1	33	63	25	91	47	5	3	43	1.41
16750014--16750097	37	2.3	37	85	4	107	21	10	15	52	1.73
16750603--16750646	18	2.2	20	84	11	56	38	0	4	56	1.20
16751546--16751575	3	10.0	3	100	0	60	33	0	0	66	0.92
16752484--16752515	3	10.7	3	100	0	64	68	0	0	31	0.90
16753294--16753353	5	12.2	5	98	1	113	40	0	0	60	0.97
16753373--16753402	15	2.1	14	93	6	51	46	6	0	46	1.29
16754006--16754145	69	2.0	69	87	8	205	25	14	25	35	1.93
16759359--16759400	16	2.5	17	77	18	52	30	0	0	69	0.89
16774826--16774877	18	2.9	18	77	11	61	25	28	25	21	1.99
16774814--16774889	36	2.1	36	87	4	109	23	30	23	22	1.99
16775030--16775082	24	2.2	24	82	0	61	32	7	9	50	1.62
16784886--16785073	95	1.9	95	84	10	247	36	17	7	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16787341--16787543	103	2.0	103	96	0	370	31	14	14	40	1.85
16792243--16792276	16	2.1	16	100	0	68	5	38	11	44	1.65
16796423--16796478	29	2.0	29	82	10	71	57	1	1	39	1.20
16797252--16797281	3	10.0	3	92	0	51	3	0	63	33	1.11
16797497--16797547	20	2.6	19	81	12	59	60	5	0	33	1.21
16801040--16801084	22	2.0	22	83	8	56	57	8	0	33	1.30
16801061--16801086	12	2.2	12	100	0	52	46	7	0	46	1.31
16801067--16801107	18	2.3	19	83	12	59	51	4	0	43	1.23
16804820--16804915	31	3.1	31	95	3	174	31	9	13	45	1.75
16805461--16805537	25	3.0	25	77	5	75	77	9	10	2	1.07
16805461--16805587	62	2.1	60	85	8	168	74	9	13	2	1.15
16805484--16805587	12	8.5	12	74	7	75	75	10	13	0	1.11
16805491--16805587	24	4.0	24	76	11	92	75	10	13	1	1.10
16808267--16808330	19	3.3	19	76	4	74	65	6	3	25	1.31
16808522--16808681	20	7.8	19	66	21	67	32	5	1	60	1.29
16808542--16808671	48	2.7	49	81	10	151	33	6	1	58	1.32
16808522--16808690	67	2.5	66	80	9	171	31	4	1	61	1.27
16808628--16808715	19	4.5	19	79	9	88	37	1	0	61	1.04
16808608--16808720	29	3.8	29	81	7	120	34	2	0	61	1.16
16808583--16808720	10	14.2	10	73	13	92	34	2	0	61	1.16
16808595--16808692	9	10.1	10	78	11	71	32	3	1	63	1.17
16809134--16809229	31	3.1	31	95	3	174	31	9	13	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16814052--16814115	11	6.3	10	81	15	60	23	3	4	68	1.23
16814052--16814115	20	3.2	19	82	8	74	23	3	4	68	1.23
16817160--16817275	25	4.6	25	80	4	117	36	17	30	16	1.92
16817110--16817265	75	2.1	75	82	2	188	33	17	29	18	1.94
16817429--16817482	21	2.5	22	82	8	67	55	11	0	33	1.35
16817429--16817482	22	2.5	22	79	8	58	55	11	0	33	1.35
16819827--16819867	21	2.0	20	85	4	55	53	2	0	43	1.13
16822376--16822423	25	1.9	25	83	8	62	45	2	0	52	1.12
16822380--16822429	20	2.7	19	80	20	61	46	2	0	52	1.12
16823733--16823851	34	3.5	34	81	0	130	31	11	14	42	1.82
16838952--16838987	18	2.0	18	100	0	72	44	0	5	50	1.25
16845966--16846227	133	2.0	133	85	1	355	23	23	24	27	2.00
16851956--16852007	25	2.1	25	82	7	61	42	1	1	53	1.23
16852872--16853587	307	2.4	304	78	12	688	36	14	8	40	1.76
16855141--16855179	20	2.0	20	85	10	53	58	0	0	41	0.98
16855753--16855792	18	2.2	19	86	4	55	65	2	2	30	1.19
16855823--16855859	9	4.0	9	89	3	56	67	10	0	21	1.21
16857257--16857458	82	2.5	81	95	0	359	26	6	16	50	1.70
16859986--16860030	23	2.0	23	82	8	56	51	6	4	37	1.49
16861825--16861904	38	2.1	38	97	0	151	41	2	38	17	1.63
16865736--16865772	19	1.9	19	94	0	65	5	32	0	62	1.18
16868236--16868270	16	2.1	17	89	5	54	42	11	0	45	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16877346--16877451	42	2.5	43	87	1	151	23	16	28	31	1.97
16877348--16877451	43	2.5	42	87	1	145	24	16	27	31	1.96
16877348--16877463	43	2.7	43	84	6	139	22	15	28	33	1.95
16878628--16878666	21	1.9	20	84	5	51	41	2	17	38	1.64
16878917--16878944	14	2.0	14	100	0	56	50	0	21	28	1.49
16891153--16891206	24	2.2	24	96	0	99	50	18	9	22	1.75
16908588--16908644	28	2.0	28	100	0	114	31	17	36	14	1.89
16910179--16910279	52	2.0	51	92	3	168	29	12	15	41	1.85
16913532--16913592	29	2.1	29	90	0	95	39	1	19	39	1.62
16913537--16913602	29	2.3	29	86	0	87	39	1	16	42	1.58
16914896--16915071	59	3.0	59	85	1	210	50	9	5	34	1.59
16915083--16915118	16	2.2	16	100	0	72	11	19	44	25	1.83
16915947--16916200	47	5.4	47	94	0	418	38	14	12	33	1.85
16916454--16916488	15	2.3	15	90	9	54	51	22	0	25	1.48
16917140--16917263	43	2.9	43	81	11	137	32	29	18	19	1.96
16927918--16927942	12	2.1	12	100	0	50	52	8	0	40	1.31
16928287--16928723	93	4.7	94	91	1	734	40	13	11	33	1.82
16928260--16928723	140	3.3	140	88	1	673	41	14	11	32	1.82
16928285--16928723	47	9.4	47	91	1	711	41	13	11	33	1.82
16928955--16928989	15	2.3	15	90	9	54	51	22	0	25	1.48
16929642--16929852	43	4.9	42	77	12	205	31	29	18	20	1.97
16929642--16929841	86	2.3	86	98	0	382	29	29	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16932101--16932200	49	2.0	49	92	0	164	24	24	15	37	1.93
16932758--16932797	10	3.8	10	81	12	53	65	0	0	35	0.93
16932758--16932836	31	2.5	33	78	14	85	63	0	2	34	1.08
16938904--16939044	3	47.0	3	100	0	282	33	0	0	66	0.92
16943541--16943598	8	7.4	8	79	16	68	79	8	0	12	0.94
16943540--16943598	9	7.3	9	75	21	60	79	8	0	11	0.93
16943549--16943613	15	4.5	13	73	19	58	78	7	1	12	1.02
16943539--16943584	21	2.1	22	96	4	85	82	8	0	8	0.84
16944460--16944489	8	3.6	8	95	4	51	76	0	13	10	1.01
16944459--16944496	16	2.3	17	81	4	51	76	0	13	10	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126