genome.fa.s14.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  7  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1795307--1795347	20	2.0	20	85	4	55	24	0	4	70	1.06
1796131--1796172	18	2.3	19	91	4	68	66	0	2	30	1.04
1804493--1804721	115	2.0	116	95	0	415	26	31	14	27	1.95
1811994--1812066	31	2.4	31	90	2	112	43	9	12	34	1.75
1813969--1814009	18	2.3	18	100	0	82	29	17	9	43	1.80
1814951--1814983	17	1.9	17	93	0	57	84	0	15	0	0.61
1817115--1817139	12	2.1	12	100	0	50	48	0	28	24	1.52
1819543--1819619	31	2.5	32	85	8	97	44	7	2	45	1.46
1822652--1822686	3	11.7	3	88	11	54	68	0	2	28	1.04
1824420--1824727	96	3.3	95	73	11	314	31	20	15	31	1.94
1824315--1824783	181	2.6	181	89	0	688	31	20	16	31	1.95
1824358--1824769	96	4.6	88	72	13	309	31	20	16	30	1.95
1824697--1824895	44	4.5	44	71	16	124	27	21	19	31	1.97
1824917--1825050	44	3.0	45	75	2	126	26	20	20	32	1.97
1824561--1825098	274	2.0	275	82	3	663	28	20	18	32	1.96
1825927--1825984	11	5.0	11	76	19	55	5	15	0	79	0.90
1825928--1825985	18	3.2	18	77	18	75	5	13	0	81	0.86
1825927--1825983	16	3.3	16	77	17	69	5	15	0	78	0.91
1831045--1831104	12	5.2	11	84	7	50	56	3	6	33	1.42
1831045--1831088	18	2.4	18	81	7	54	54	2	9	34	1.44
1831120--1831167	17	2.8	18	82	14	57	70	4	2	22	1.15
1832319--1832376	8	7.6	8	77	11	68	5	0	50	44	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1832317--1832384	15	4.5	15	96	0	127	7	0	47	45	1.31
1837698--1837750	13	4.1	13	76	9	54	37	22	7	32	1.82
1838720--1838763	21	2.1	21	100	0	88	38	9	13	38	1.77
1838719--1838774	21	2.8	19	87	10	85	37	8	16	37	1.80
1838974--1839012	19	1.9	19	85	10	51	12	7	5	74	1.20
1839235--1839274	3	13.3	3	84	10	55	32	0	0	67	0.91
1839219--1839273	15	3.7	15	74	16	53	30	0	1	67	1.01
1839221--1839272	12	4.1	12	80	14	52	28	0	1	69	0.99
1841568--1841619	23	2.2	24	86	3	70	21	1	3	73	1.10
1853781--1853850	22	3.0	23	81	10	79	48	2	2	45	1.32
1853844--1853963	59	2.1	59	95	1	215	42	5	9	42	1.60
1857542--1857685	43	3.4	43	80	9	145	31	27	16	23	1.96
1857542--1857697	84	1.9	84	81	10	194	31	27	16	24	1.96
1860583--1860746	82	2.0	83	97	1	312	48	10	6	34	1.64
1861113--1861284	82	2.1	82	92	2	285	54	9	9	26	1.63
1863546--1863588	22	2.0	22	86	4	61	55	4	0	39	1.20
1864632--1864760	11	12.9	11	68	24	74	57	0	2	39	1.17
1864632--1864765	28	4.9	28	69	19	88	57	0	2	39	1.16
1864632--1864762	39	3.3	39	86	8	176	56	0	2	40	1.17
1879445--1879500	27	2.0	28	82	3	69	42	5	7	44	1.54
1881742--1881782	16	2.5	17	84	7	50	34	14	12	39	1.84
1884618--1884836	72	3.0	72	93	0	357	21	36	19	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1884673--1884794	39	3.3	39	63	21	98	19	35	21	23	1.96
1886024--1886094	36	2.0	35	83	10	90	67	2	9	19	1.32
1886347--1886388	22	2.0	21	90	4	66	16	9	4	69	1.33
1893045--1893146	41	2.5	41	88	3	152	27	19	24	28	1.99
1898441--1898476	17	2.1	18	89	5	56	38	5	0	55	1.23
1904583--1904805	26	8.8	26	68	13	94	19	25	21	33	1.97
1905638--1905901	45	5.9	45	94	0	429	25	19	15	39	1.91
1912058--1912411	45	7.9	45	96	0	609	25	19	15	38	1.91
1919841--1919878	3	13.0	3	94	5	69	31	0	0	68	0.90
1928027--1928151	47	2.6	48	83	6	146	44	4	12	39	1.63
1933057--1933124	29	2.3	29	73	14	68	52	1	11	33	1.47
1933109--1933147	19	2.0	20	95	5	71	61	0	5	33	1.18
1935064--1935131	35	1.9	35	91	5	111	42	2	14	39	1.61
1938571--1938638	35	1.9	35	91	5	111	42	2	14	39	1.61
1939563--1939609	23	1.9	26	87	12	73	31	8	6	53	1.57
1939803--1939844	21	2.0	21	86	4	59	23	16	4	54	1.61
1949589--1949618	13	2.2	14	94	5	53	53	20	0	26	1.46
1956633--1956704	27	2.7	26	76	8	72	40	15	26	18	1.90
1960069--1960120	20	2.6	19	70	8	50	63	0	1	34	1.06
1960078--1960113	10	3.5	10	96	3	63	52	0	2	44	1.15
1964860--1965060	106	1.9	106	98	0	393	30	18	19	30	1.96
1965522--1965627	37	2.8	38	77	16	105	50	0	13	35	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1965915--1965971	22	2.5	22	78	18	64	64	5	7	22	1.38
1970796--1971549	132	5.7	132	78	3	714	28	27	16	27	1.97
1970820--1971477	88	7.5	88	90	1	919	28	27	17	26	1.97
1983970--1984026	22	2.5	22	78	18	64	64	5	7	22	1.38
1984057--1984108	24	2.2	25	82	6	63	67	5	13	13	1.40
1986322--1986362	21	2.0	21	90	0	64	19	29	21	29	1.98
1993768--1993895	42	3.0	40	75	12	121	32	25	17	25	1.97
1997329--1997387	21	2.9	21	82	12	61	44	33	5	16	1.70
1997340--1997387	21	2.3	22	82	10	64	43	35	4	16	1.67
1997460--1997514	28	2.0	28	81	0	65	23	3	32	40	1.72
1998254--1998304	11	4.6	11	75	0	57	19	15	9	54	1.68
2005541--2005686	3	48.7	3	100	0	292	32	0	0	67	0.91
2005875--2005903	12	2.4	12	100	0	58	41	10	0	48	1.37
2006841--2006865	2	12.5	2	100	0	50	52	0	0	48	1.00
2008470--2008513	19	2.3	19	96	0	79	25	27	2	45	1.65
2012752--2012824	36	2.0	36	100	0	146	31	2	35	30	1.72
2014733--2014828	47	2.0	47	95	0	174	17	33	15	33	1.92
2018674--2018732	22	2.6	22	86	7	75	35	6	1	55	1.36
2021188--2021249	23	2.7	22	80	9	72	38	38	6	16	1.74
2022500--2022553	26	2.0	27	82	10	67	25	7	0	66	1.17
2022508--2022578	36	2.0	38	82	15	91	26	7	1	64	1.27
2022511--2022568	26	2.2	25	82	8	71	29	5	0	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2034802--2035124	73	4.5	71	80	6	375	27	16	23	33	1.95
2034802--2035124	145	2.3	142	88	3	461	27	16	23	33	1.95
2035142--2035679	74	7.0	73	76	12	425	28	17	20	34	1.95
2035342--2035612	84	3.1	87	83	6	327	26	16	18	37	1.93
2035430--2035836	160	2.5	161	80	5	457	28	16	19	36	1.93
2035689--2035957	73	3.7	72	81	10	303	31	15	20	32	1.94
2037678--2037760	10	8.3	10	73	17	66	36	2	1	60	1.18
2037680--2037792	42	2.7	44	81	11	123	35	3	2	58	1.29
2037681--2037792	43	2.7	40	77	16	111	35	3	2	58	1.30
2037677--2037804	12	10.5	12	65	26	56	36	3	2	57	1.27
2046207--2046258	26	2.0	26	88	0	77	26	13	3	55	1.55
2066099--2066204	52	2.0	52	96	0	194	39	14	2	43	1.60
2066107--2066188	26	3.2	26	61	13	60	39	12	2	46	1.54
2067779--2067852	29	2.5	29	88	4	103	50	13	14	21	1.78
2068811--2068858	19	2.6	19	80	9	55	35	2	14	47	1.56
2068872--2068964	43	2.2	43	88	3	134	29	4	12	53	1.58
2073126--2073991	62	14.0	62	99	0	1669	41	19	4	33	1.73
2075219--2075300	11	7.4	11	71	17	55	78	7	10	3	1.08
2075710--2075772	6	10.2	6	75	21	51	79	1	15	3	0.94
2075710--2075771	13	4.9	12	79	14	63	80	1	14	3	0.91
2076785--2076944	45	3.4	45	65	17	108	30	17	23	28	1.97
2076751--2076946	97	2.0	95	94	1	338	30	18	21	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2076913--2077109	46	4.4	46	65	10	136	25	20	23	30	1.98
2076846--2077215	134	2.7	134	96	1	659	28	20	22	28	1.99
2083939--2084021	42	2.0	41	97	0	148	40	13	24	20	1.88
2085429--2085476	19	2.6	19	80	9	55	35	2	14	47	1.56
2085490--2085581	43	2.2	42	90	5	141	28	6	13	52	1.65
2089407--2089446	21	2.0	21	95	5	73	32	20	27	20	1.97
2096218--2096280	17	3.7	16	77	10	54	17	20	28	33	1.95
2103621--2103656	19	1.9	18	88	5	54	41	13	5	38	1.68
2109825--2109875	21	2.4	21	74	6	50	25	5	17	50	1.68
2115171--2115255	42	2.0	42	93	0	143	20	34	12	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126