genome.fa.s14.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  34  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9900089--9900143	16	3.5	15	75	22	51	38	7	0	54	1.28
9900547--9900781	110	2.1	110	98	0	452	28	11	17	42	1.83
9901913--9902039	20	6.4	19	69	8	67	22	14	11	52	1.72
9902013--9902098	21	4.3	21	68	14	65	22	13	9	54	1.67
9901969--9902078	40	2.8	40	78	14	120	23	10	10	55	1.64
9902659--9902709	23	2.1	25	82	7	61	64	1	0	33	1.05
9903105--9903174	20	3.6	19	75	11	70	21	24	0	54	1.45
9903165--9903214	20	2.5	21	80	6	59	20	16	10	54	1.70
9903629--9903703	20	3.7	20	67	1	51	46	14	22	16	1.83
9904629--9904721	48	1.9	49	91	2	152	17	18	12	51	1.76
9910522--9910591	29	2.4	29	88	4	97	47	7	5	40	1.55
9911140--9911216	2	38.5	2	100	0	154	50	0	49	0	1.00
9912710--9912754	23	2.0	23	91	4	74	46	17	4	31	1.68
9912736--9912788	19	3.0	17	73	10	52	33	18	9	37	1.83
9912707--9912764	22	2.6	22	86	7	82	43	18	3	34	1.68
9918775--9918819	23	2.0	23	91	4	74	46	17	4	31	1.68
9918772--9918829	22	2.6	22	86	7	82	43	18	3	34	1.68
9935674--9935735	8	7.4	8	76	8	52	79	0	1	19	0.82
9935676--9935735	5	11.8	5	76	16	61	78	0	1	20	0.84
9935671--9935735	16	3.9	16	80	9	69	78	0	1	20	0.83
9935666--9935735	24	2.8	24	78	10	70	77	0	2	20	0.90
9940170--9940220	13	3.9	13	92	0	84	29	7	21	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9941232--9942127	449	2.0	449	98	0	1729	36	18	13	30	1.90
9942133--9942875	372	2.0	372	99	0	1468	43	16	14	25	1.85
9943081--9943159	39	2.0	39	100	0	158	35	20	10	34	1.86
9944434--9944481	23	2.1	23	96	0	87	43	18	35	2	1.62
9944446--9944528	30	2.7	30	78	10	96	42	14	39	3	1.63
9947147--9947227	40	2.0	40	92	0	135	18	11	30	39	1.86
9956127--9956294	27	6.3	26	88	4	237	16	18	22	42	1.89
9956127--9956289	80	2.0	81	89	3	249	16	19	23	41	1.90
9958201--9958248	3	16.0	3	82	0	60	33	0	4	62	1.14
9958316--9958349	13	2.6	13	95	0	59	38	0	2	58	1.13
9958682--9958711	16	1.9	15	93	6	51	20	0	0	80	0.72
9968361--9968634	50	5.4	50	76	6	178	28	21	25	23	1.99
9969221--9969438	109	2.0	109	93	1	375	40	9	17	32	1.82
9971997--9972116	45	2.5	47	82	10	147	39	19	29	12	1.88
9973378--9973577	44	4.6	44	76	8	201	31	20	23	25	1.98
9973422--9973614	88	2.2	88	90	4	302	32	19	21	26	1.97
9973466--9973612	44	3.3	43	71	15	138	31	18	21	29	1.97
9973675--9973841	44	3.8	44	75	13	130	32	18	21	27	1.97
9975618--9975648	16	2.0	15	93	6	53	16	0	0	83	0.64
9981005--9981057	17	3.1	17	86	0	79	50	3	22	22	1.64
9984697--9984749	17	3.1	17	86	0	79	50	3	22	22	1.64
9988303--9988487	94	2.0	94	90	0	289	35	11	29	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9990309--9990353	23	2.0	23	82	8	56	33	4	11	51	1.58
9990932--9991050	41	2.9	41	88	3	170	26	19	23	30	1.98
9992487--9992536	17	2.9	17	93	0	91	44	6	26	24	1.76
9998074--9998112	20	2.0	20	90	10	62	51	30	5	12	1.62
9999199--9999323	25	5.0	25	77	0	142	27	16	23	32	1.96
9999200--9999352	50	3.1	50	89	0	243	27	17	24	30	1.97
9999212--9999352	25	5.6	25	78	0	138	26	18	24	30	1.98
9999846--9999883	20	1.9	20	94	0	67	23	7	0	68	1.16
10015750--10015785	16	2.3	16	90	4	56	33	2	5	58	1.36
10018471--10018504	17	2.0	17	94	0	59	38	2	11	47	1.55
10020238--10020483	120	2.1	119	93	1	429	28	16	21	34	1.95
10031383--10031414	15	2.1	15	94	0	55	46	12	21	18	1.82
10034509--10034562	24	2.2	24	86	0	72	27	16	31	24	1.96
10034729--10034762	15	2.4	14	90	5	50	26	2	0	70	1.01
10043275--10043319	19	2.3	20	88	3	65	24	35	0	40	1.56
10046762--10046814	23	2.4	22	76	20	56	9	18	1	69	1.25
10049149--10049180	12	2.6	12	95	5	55	65	3	6	25	1.31
10052429--10052483	9	6.1	9	91	0	92	29	10	14	45	1.79
10052535--10052565	9	3.4	9	95	0	53	35	22	12	29	1.91
10058355--10058419	33	2.0	33	96	0	121	44	12	7	35	1.71
10061936--10061972	18	2.0	19	89	5	58	64	0	0	35	0.94
10062003--10062177	62	3.1	54	68	26	148	51	2	9	36	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10062104--10062147	22	2.0	23	86	4	63	56	0	6	36	1.26
10062109--10062161	22	2.4	23	72	18	58	56	0	7	35	1.28
10062003--10062221	106	2.0	109	87	8	322	52	3	9	35	1.49
10062018--10062244	106	2.1	111	83	9	288	53	3	9	33	1.51
10062970--10062996	14	1.9	14	100	0	54	88	0	3	7	0.61
10063269--10063299	15	2.1	15	93	0	53	19	19	29	32	1.96
10070890--10070937	3	16.0	3	100	0	96	33	33	0	33	1.58
10074139--10074190	23	2.3	23	90	3	79	76	5	0	17	0.97
10074141--10074190	11	4.5	11	77	5	55	78	6	0	16	0.95
10074401--10075060	156	4.3	154	86	5	897	51	6	10	31	1.63
10075184--10075228	19	2.4	19	81	11	56	17	0	6	75	1.01
10076496--10076774	123	2.3	123	94	1	488	30	14	21	33	1.93
10079920--10080539	30	20.8	30	85	11	814	29	0	24	46	1.52
10079912--10080539	59	10.5	60	84	10	762	28	0	24	46	1.53
10080303--10080465	29	5.1	36	76	23	168	27	0	26	46	1.54
10080421--10080518	23	3.9	23	78	18	97	30	0	21	47	1.51
10082927--10082985	30	2.0	30	96	0	109	35	0	32	32	1.58
10084367--10084407	7	5.9	7	94	0	73	43	39	0	17	1.49
10098731--10098830	40	2.6	39	78	12	100	23	3	11	63	1.41
10101567--10101675	34	3.2	34	84	1	121	17	26	13	42	1.87
10101800--10101896	51	1.9	49	83	8	124	20	25	12	41	1.87
10110561--10110612	25	2.1	25	100	0	104	42	3	7	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10125388--10125576	50	3.8	49	79	8	193	60	4	6	27	1.42
10125388--10125877	26	18.8	26	67	17	196	59	3	8	29	1.43
10125671--10125783	27	4.3	26	70	13	79	50	1	12	35	1.50
10125623--10125786	78	2.1	79	95	2	296	53	2	10	33	1.48
10125649--10125763	25	4.5	25	69	11	72	57	1	8	32	1.39
10125797--10125837	15	2.8	16	82	10	52	70	2	0	26	0.99
10126624--10126662	21	1.9	21	94	5	71	74	5	12	7	1.20
10126672--10126717	19	2.2	21	85	11	60	23	6	13	56	1.60
10135410--10135443	17	2.0	17	94	0	59	47	11	2	38	1.55
10138129--10138164	16	2.3	15	90	4	54	58	5	2	33	1.36
10154302--10154344	19	2.3	19	80	19	54	58	4	0	37	1.19
10155349--10155407	23	2.6	23	79	15	61	42	13	6	37	1.71
10167468--10167565	32	3.2	32	62	24	82	39	12	4	43	1.61
10167449--10167570	61	2.0	61	98	0	235	39	12	3	45	1.58
10170448--10170474	7	3.9	7	100	0	54	14	0	0	85	0.61
10172510--10172542	14	2.4	14	95	5	59	57	15	6	21	1.59
10180687--10180743	29	2.0	29	89	6	89	33	47	1	17	1.58
10180706--10180794	37	2.4	37	88	7	135	28	55	1	15	1.48
10180875--10180919	11	4.0	11	82	2	54	31	0	26	42	1.56
10180866--10180918	22	2.4	22	74	3	52	32	0	28	39	1.57
10181233--10181269	19	2.0	18	94	5	65	32	0	0	67	0.91
10181128--10181244	56	2.1	56	84	3	148	25	4	6	63	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10181241--10181271	14	2.2	14	94	0	53	32	0	0	67	0.91
10184351--10184394	20	2.2	20	87	4	61	50	25	2	22	1.61
10188349--10188392	21	2.1	21	83	8	54	25	9	2	63	1.35
10190623--10190666	22	2.0	22	100	0	88	18	22	4	54	1.61
10194457--10194599	71	2.0	71	93	0	241	23	16	14	45	1.84
10205515--10205571	13	4.6	13	72	18	59	33	1	0	64	1.04
10206542--10206824	138	2.1	138	97	0	539	44	8	13	34	1.73
10210267--10210300	17	2.0	17	94	0	59	32	0	8	58	1.29
10212226--10212340	61	1.9	61	89	3	178	28	13	13	43	1.83
10213976--10214076	51	2.0	51	98	0	193	27	9	14	47	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126