genome.fa.s14.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  94  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28599063--28599108	23	2.0	23	82	0	56	15	4	17	63	1.47
28609644--28609713	33	2.1	33	91	0	113	38	14	10	37	1.79
28610254--28610456	51	4.0	50	74	11	198	29	27	18	24	1.98
28610264--28610446	101	1.8	102	89	3	289	30	26	19	24	1.98
28611704--28611925	122	1.8	122	87	3	331	31	16	21	31	1.95
28613177--28613305	52	2.5	51	85	6	163	26	13	32	27	1.93
28613177--28613305	51	2.5	52	82	8	165	26	13	32	27	1.93
28615219--28615274	22	2.5	22	91	0	94	58	14	12	14	1.63
28629692--28629773	41	2.0	41	87	0	119	37	29	9	23	1.87
28638104--28638153	20	2.6	19	81	6	64	50	26	12	12	1.74
28641105--28641129	12	2.1	12	100	0	50	68	0	0	32	0.90
28646903--28646942	21	1.9	21	85	10	55	45	0	0	55	0.99
28646998--28647031	16	2.1	16	88	0	50	26	5	0	67	1.13
28659131--28659169	11	3.4	11	80	13	51	51	0	2	46	1.14
28659135--28659188	28	1.9	28	85	14	76	51	0	1	46	1.11
28659149--28659186	14	2.4	17	87	12	55	47	0	0	52	1.00
28659385--28659432	19	2.5	20	86	6	64	50	4	8	37	1.52
28659395--28659433	20	2.0	20	95	5	71	51	2	5	41	1.38
28659937--28659970	17	1.9	18	88	5	52	41	0	23	35	1.55
28660268--28660305	18	2.1	18	85	9	51	42	0	18	39	1.50
28660382--28660444	23	2.9	23	76	11	78	17	17	25	39	1.91
28665187--28665227	15	2.7	15	88	7	57	24	4	4	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28668016--28668086	29	2.4	29	88	4	90	33	14	5	46	1.67
28668117--28668144	14	2.0	14	100	0	56	64	21	0	14	1.29
28668250--28668311	22	2.8	22	82	4	81	50	25	0	24	1.50
28674559--28674604	3	15.3	3	81	0	56	32	2	4	60	1.28
28674763--28674824	28	2.2	28	75	8	65	35	9	0	54	1.33
28674791--28674817	8	3.4	8	100	0	54	40	11	0	48	1.39
28674682--28674841	50	3.2	51	70	18	129	39	8	2	50	1.46
28674686--28674848	54	3.2	52	71	19	146	40	8	1	49	1.44
28678076--28678243	60	2.8	60	76	4	176	39	4	16	39	1.68
28678942--28679365	125	3.4	123	85	4	573	29	18	21	30	1.97
28680417--28680448	9	3.7	9	95	4	57	56	9	0	34	1.32
28680472--28680601	70	1.9	69	93	1	224	52	12	0	35	1.39
28680499--28680557	25	2.4	25	94	0	100	47	13	0	38	1.43
28680525--28680611	44	2.0	45	90	2	140	52	12	0	34	1.39
28682354--28682396	12	3.8	12	80	20	56	41	0	30	27	1.56
28684541--28684789	55	4.5	55	94	0	426	26	8	15	50	1.72
28684891--28684923	13	2.5	13	95	0	57	54	21	6	18	1.64
28684927--28684954	8	3.5	8	100	0	56	78	0	0	21	0.75
28685579--28685707	10	13.4	9	70	16	73	64	0	2	32	1.12
28685578--28685707	19	6.7	19	73	13	81	64	0	2	32	1.11
28685982--28686047	9	7.0	9	71	10	51	30	3	3	63	1.24
28687396--28687809	202	2.1	199	92	3	661	36	18	12	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28690000--28690027	2	14.0	2	100	0	56	50	0	50	0	1.00
28691868--28691922	28	2.0	26	86	6	74	36	20	5	38	1.75
28696720--28696827	56	1.9	55	92	1	180	40	12	7	38	1.72
28699385--28699439	24	2.3	24	96	0	101	32	7	30	29	1.84
28700411--28701247	56	15.0	56	99	0	1649	39	7	12	40	1.71
28703019--28703580	126	4.5	125	82	5	650	29	16	22	31	1.96
28703038--28703581	251	2.2	250	84	2	716	29	16	22	31	1.96
28706756--28707633	21	40.0	22	76	9	769	24	1	30	43	1.63
28706756--28707597	43	19.3	42	76	11	741	24	1	30	43	1.63
28706816--28706871	28	1.9	29	82	13	71	23	0	32	44	1.53
28706765--28706915	72	2.1	73	86	4	209	25	0	30	43	1.60
28707441--28707572	71	1.9	70	88	1	201	23	1	31	43	1.63
28708829--28708889	7	8.7	7	100	0	122	57	14	0	27	1.38
28709058--28709095	20	1.9	20	84	10	51	55	7	2	34	1.43
28710107--28710168	11	5.6	11	88	3	90	45	1	32	20	1.61
28710034--28710131	51	1.9	51	83	4	126	46	2	24	26	1.63
28710095--28710169	22	3.4	21	82	14	89	45	1	30	22	1.61
28710093--28710169	33	2.3	33	84	10	111	45	1	29	23	1.61
28712383--28712619	93	2.5	93	86	4	298	35	14	10	39	1.80
28714296--28714956	93	7.1	93	94	0	1124	42	18	13	26	1.87
28714306--28714949	23	27.6	22	70	16	329	42	18	13	26	1.87
28715697--28715851	28	5.5	28	89	0	193	30	27	10	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28715697--28715851	84	1.8	84	87	0	229	30	27	10	30	1.91
28725664--28725720	28	2.0	28	100	0	114	31	10	17	40	1.84
28728188--28728488	41	7.4	40	74	9	207	16	21	21	39	1.92
28728187--28728470	82	3.5	80	81	5	300	16	22	21	39	1.92
28728186--28728488	123	2.5	123	76	5	267	16	22	21	39	1.92
28730746--28730783	10	3.8	10	92	0	67	44	0	13	42	1.43
28730746--28730783	20	1.9	20	100	0	76	44	0	13	42	1.43
28730851--28730902	27	1.9	27	88	0	77	40	0	9	50	1.35
28741101--28741458	71	5.0	71	82	3	405	25	17	25	31	1.97
28743454--28743489	16	2.2	16	95	0	63	27	0	33	38	1.57
28743464--28743506	16	2.7	16	88	0	59	34	0	37	27	1.57
28743721--28743762	15	2.7	16	82	14	52	52	2	0	45	1.13
28743730--28743771	15	2.9	15	82	10	52	52	0	0	47	1.00
28743859--28743900	16	2.6	16	82	14	50	52	0	2	45	1.13
28743835--28744155	91	3.4	95	84	11	428	48	2	2	46	1.31
28743912--28744170	91	2.8	91	95	2	475	47	2	3	46	1.32
28744017--28744084	18	3.8	18	79	16	70	52	1	2	42	1.25
28745167--28745202	17	2.1	17	100	0	72	41	16	0	41	1.48
28752431--28752471	18	2.2	19	87	12	59	41	4	0	53	1.22
28753940--28753971	14	2.1	16	88	11	50	43	0	3	53	1.16
28753883--28754056	79	2.2	79	100	0	348	39	5	10	45	1.61
28754019--28754050	14	2.1	16	88	11	50	43	0	3	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28760790--28760853	22	3.1	21	82	6	69	14	23	15	46	1.82
28760816--28760853	20	2.0	20	89	5	60	5	26	21	47	1.71
28766147--28766200	21	2.6	21	82	5	65	9	22	18	50	1.75
28767397--28767445	22	2.3	22	92	3	82	73	12	14	0	1.10
28776042--28776072	11	2.8	11	95	0	53	19	48	3	29	1.64
28776619--28776711	18	5.2	18	96	0	168	26	23	17	32	1.96
28780765--28780795	11	2.8	11	95	0	53	19	48	3	29	1.64
28788728--28788759	16	1.9	17	93	6	57	56	3	0	40	1.15
28815356--28815392	19	1.9	19	94	0	65	29	27	21	21	1.99
28816147--28816200	15	3.5	15	78	16	58	44	5	7	42	1.55
28821354--28821517	25	6.6	25	73	6	82	23	14	25	37	1.92
28821378--28821773	50	7.9	50	82	1	400	25	13	24	36	1.92
28821400--28821775	25	15.0	25	71	7	208	25	14	24	36	1.93
28828549--28828638	45	2.0	45	100	0	180	28	26	13	31	1.94
28830124--28830429	27	11.4	27	77	7	225	20	19	18	41	1.91
28830124--28830429	54	5.7	53	76	8	248	20	19	18	41	1.91
28830141--28830425	81	3.6	78	78	7	286	20	18	18	41	1.90
28838948--28839397	51	8.9	51	75	6	396	30	14	25	29	1.95
28838947--28839397	102	4.4	102	87	2	590	30	14	25	29	1.95
28845082--28845186	51	2.2	46	86	8	138	53	9	4	32	1.54
28847351--28847415	25	2.7	23	79	9	76	32	13	10	43	1.79
28847380--28847418	11	3.5	11	79	6	51	28	10	12	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28847351--28847418	23	2.9	23	80	8	82	30	13	11	44	1.79
28852056--28852168	43	2.6	43	88	2	156	31	28	15	23	1.96
28852024--28852177	43	3.6	42	80	6	150	30	25	15	27	1.96
28856687--28856742	28	2.0	28	89	0	85	48	17	14	19	1.81
28871807--28871835	3	9.7	3	100	0	58	65	0	0	34	0.93
28875819--28875870	25	2.1	25	92	0	86	44	23	7	25	1.79
28882299--28882860	280	2.0	279	95	2	1004	25	12	6	54	1.62
28882787--28882938	78	2.0	75	91	6	243	28	9	9	52	1.65
28888910--28888958	24	2.0	24	100	0	98	38	16	16	28	1.90
28889659--28889902	45	5.5	45	74	10	160	31	20	21	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126