genome.fa.s14.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  48  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13988564--13988650	26	3.4	26	77	4	97	42	25	11	20	1.86
13988564--13988667	26	4.0	26	75	6	95	39	26	14	19	1.90
13988566--13988667	52	2.0	51	83	9	127	40	27	13	18	1.89
14001499--14001538	17	2.4	17	82	0	53	22	32	25	20	1.98
14001767--14001846	32	2.5	32	83	0	97	36	22	22	18	1.95
14003277--14003391	40	2.9	40	78	7	119	33	24	25	17	1.96
14003449--14003644	41	4.8	41	79	3	207	17	23	23	34	1.96
14003447--14003644	82	2.4	82	90	0	306	17	24	23	33	1.96
14004336--14004450	40	2.9	40	78	7	119	33	24	25	17	1.96
14004508--14004703	41	4.8	41	79	3	207	17	23	23	34	1.96
14004506--14004703	82	2.4	82	90	0	306	17	24	23	33	1.96
14005989--14006051	7	8.7	7	77	6	63	22	0	46	31	1.52
14005971--14006105	22	6.1	21	74	13	85	22	1	43	32	1.62
14005996--14006080	15	5.7	15	75	12	68	24	1	42	31	1.62
14006026--14006098	38	1.9	37	88	2	110	21	2	43	31	1.67
14005968--14006106	7	19.0	7	68	16	59	22	1	42	33	1.62
14006778--14006815	19	2.0	19	85	10	51	50	5	0	44	1.24
14007236--14007276	21	2.0	21	95	0	73	14	19	24	41	1.89
14008858--14008887	13	2.3	13	94	0	51	40	0	10	50	1.36
14010584--14010661	21	3.7	21	84	0	84	38	21	37	2	1.68
14010647--14010686	12	3.3	12	89	0	53	42	17	35	5	1.71
14011123--14011263	42	3.3	42	86	4	194	26	21	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14014850--14014884	11	3.3	11	88	4	54	74	0	5	20	1.02
14015480--14016332	426	2.0	426	99	0	1697	39	12	10	37	1.77
14018312--14018353	19	2.2	19	83	12	50	35	7	4	52	1.50
14018703--14018741	14	2.7	15	84	11	55	41	10	17	30	1.83
14027490--14027576	43	2.0	43	84	4	113	25	26	17	31	1.97
14028566--14028626	12	4.6	14	75	20	69	52	6	0	40	1.27
14028556--14028626	26	2.8	24	78	14	70	56	5	0	38	1.23
14028567--14028635	12	5.0	15	75	21	55	52	7	0	40	1.29
14030086--14030278	30	6.5	30	82	4	167	40	13	24	21	1.90
14030140--14030337	30	6.7	29	77	12	127	42	12	25	19	1.86
14030328--14030482	30	5.2	31	82	6	185	34	18	25	20	1.96
14030086--14030368	119	2.4	119	88	1	406	40	13	25	20	1.89
14030328--14030482	60	2.6	60	91	2	240	34	18	25	20	1.96
14035140--14035216	37	2.1	37	90	0	118	41	5	11	41	1.64
14037839--14037884	5	9.4	5	79	13	51	41	0	2	56	1.11
14037841--14037897	24	2.4	23	82	5	69	36	0	1	61	1.07
14045345--14045610	40	6.7	40	92	3	403	26	27	21	24	1.99
14050820--14050911	39	2.3	39	88	5	132	25	28	22	23	2.00
14050801--14050964	40	4.1	40	78	10	167	24	26	23	25	2.00
14054483--14054605	38	3.2	38	84	0	165	29	20	17	32	1.96
14054483--14054643	38	4.3	38	79	6	123	30	18	18	32	1.95
14054482--14054643	76	2.1	76	80	3	184	30	18	18	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14058852--14059074	79	2.8	78	82	9	265	24	27	22	25	2.00
14058852--14059074	39	5.7	40	86	8	266	24	27	22	25	2.00
14066843--14067065	79	2.8	78	82	9	265	24	27	22	25	2.00
14066843--14067065	39	5.7	40	86	8	266	24	27	22	25	2.00
14074498--14074537	15	2.7	15	100	0	80	47	20	7	25	1.75
14075562--14075616	23	2.4	23	78	0	65	49	16	10	23	1.77
14084031--14084088	29	2.0	29	93	0	98	37	17	24	20	1.93
14086514--14086664	74	2.0	75	90	1	241	45	10	21	23	1.82
14097421--14097478	28	2.1	28	96	0	107	39	15	0	44	1.47
14098278--14098318	9	4.6	9	82	11	57	41	9	2	46	1.50
14098865--14098913	22	2.1	23	82	14	57	30	8	6	55	1.54
14099524--14099583	30	2.0	29	83	3	75	26	11	18	43	1.84
14101723--14101748	3	8.7	3	100	0	52	0	30	0	69	0.89
14101732--14101771	21	1.9	21	89	0	62	0	20	5	75	0.99
14102283--14102453	63	2.7	63	81	3	218	30	20	23	25	1.99
14103039--14103122	44	1.9	44	97	0	159	42	22	10	23	1.85
14104476--14104671	51	3.9	50	71	5	171	31	29	16	23	1.96
14115548--14115622	13	5.8	13	73	6	53	30	8	22	38	1.83
14125519--14125565	21	2.2	22	84	3	60	48	2	2	46	1.25
14126853--14126930	27	2.9	27	76	3	86	19	21	33	25	1.97
14130172--14130499	19	16.5	19	70	20	174	54	12	1	31	1.48
14130146--14130313	41	4.1	41	72	17	143	52	13	2	32	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14130175--14130396	101	2.2	98	82	8	263	54	12	1	31	1.48
14130275--14130476	80	2.5	80	97	1	377	54	12	1	30	1.47
14130344--14130568	101	2.3	96	80	13	242	55	11	1	31	1.44
14130564--14130589	12	2.2	12	100	0	52	46	15	0	38	1.46
14130665--14130694	3	10.3	3	92	7	53	0	33	0	66	0.92
14130661--14130702	14	3.1	14	93	3	68	0	33	2	64	1.07
14130661--14130694	17	2.1	17	94	5	61	0	32	0	67	0.91
14134512--14134556	14	2.9	15	87	9	56	42	0	2	55	1.12
14141692--14141718	14	1.9	14	100	0	54	7	51	22	18	1.70
14142849--14142902	16	3.1	19	79	10	62	42	9	0	48	1.35
14144033--14144114	41	2.0	41	100	0	164	53	7	12	26	1.64
14144130--14144215	43	2.0	43	97	0	163	41	4	19	33	1.72
14145627--14145710	34	2.5	34	84	1	107	40	15	4	39	1.68
14147417--14147585	50	3.3	50	85	5	194	26	20	30	22	1.98
14151521--14151560	22	2.0	20	85	14	55	42	2	5	50	1.37
14154570--14154647	34	2.3	34	88	0	111	46	16	5	32	1.69
14155879--14155935	16	3.4	17	79	16	57	36	3	0	59	1.14
14156201--14156240	19	2.1	19	85	0	53	67	0	7	25	1.16
14157782--14157816	18	1.9	18	88	0	52	25	11	17	45	1.81
14159152--14159213	31	2.0	31	100	0	124	32	6	19	41	1.77
14159789--14159914	35	3.6	35	80	8	123	15	12	31	40	1.84
14162006--14162103	38	2.7	35	77	10	108	32	20	23	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14162548--14162604	28	2.0	28	86	6	80	31	17	21	29	1.96
14170841--14171102	41	6.4	41	92	0	418	20	28	21	29	1.98
14170873--14171128	123	2.1	123	87	1	361	22	28	21	27	1.99
14181908--14181941	16	2.1	16	94	0	59	52	23	5	17	1.66
14183333--14183366	16	2.1	16	100	0	68	52	26	5	14	1.64
14184600--14185152	272	2.0	272	98	0	1063	32	17	6	43	1.76
14195076--14195128	18	2.8	19	91	5	90	39	11	16	32	1.85
14195988--14196163	24	7.6	22	69	15	79	33	4	4	57	1.39
14196041--14196078	11	3.4	11	80	20	51	34	2	0	63	1.09
14195993--14196124	70	1.9	68	81	9	160	34	4	3	58	1.34
14196044--14196216	69	2.5	69	79	10	169	35	5	4	55	1.41
14196182--14196240	24	2.4	23	77	22	59	35	1	5	57	1.31
14196278--14196331	23	2.3	23	83	3	72	31	7	3	57	1.44
14197805--14197839	16	2.2	16	89	0	52	17	17	22	42	1.88
14198271--14198319	19	2.6	19	80	6	55	32	16	6	44	1.72
14200432--14200496	6	11.7	6	74	21	52	69	0	20	10	1.18
14200420--14200493	21	3.4	23	80	10	59	71	1	16	10	1.20
14200455--14200493	16	2.4	16	86	4	60	76	0	20	2	0.90
14201999--14202023	12	2.1	12	100	0	50	24	32	8	36	1.84
14202849--14203081	46	5.0	46	81	5	268	25	17	27	29	1.98
14203331--14203373	21	2.0	21	90	0	68	34	4	37	23	1.76
14203361--14203493	51	2.6	51	80	4	135	32	20	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14203803--14203858	19	2.9	19	97	0	103	39	10	19	30	1.86
14203805--14203881	19	3.7	22	87	6	76	38	9	18	33	1.82
14204715--14204964	24	10.7	24	72	15	157	34	5	4	56	1.42
14204674--14204954	69	4.1	69	76	10	222	34	5	4	55	1.43
14205013--14205057	23	2.0	23	90	0	72	31	6	4	57	1.44
14218752--14218794	17	2.5	17	100	0	86	9	25	41	23	1.84
14226939--14227001	29	2.2	29	91	0	99	41	11	20	26	1.86
14232658--14232696	20	2.0	20	85	10	53	38	7	7	46	1.61
14236773--14236909	26	5.4	26	77	11	151	25	18	6	48	1.72
14236773--14236908	51	2.7	49	80	11	143	25	19	6	48	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126