genome.fa.s14.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  4  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
862498--863113	305	2.0	305	93	0	1054	36	18	20	24	1.95
863041--863179	25	5.6	25	75	1	127	36	18	27	17	1.93
863041--863179	50	2.8	50	83	2	172	36	18	27	17	1.93
865570--865678	25	4.4	25	84	2	130	33	19	22	24	1.97
868460--870043	787	2.0	789	96	0	2956	42	20	8	28	1.81
870248--870331	25	3.4	25	73	6	80	34	17	21	26	1.96
877059--877174	57	2.1	55	85	9	155	45	6	17	31	1.72
877066--877192	57	2.3	57	82	8	145	47	7	16	29	1.73
878009--878067	27	2.2	27	81	3	66	44	10	10	35	1.72
878893--878955	6	10.3	6	91	1	99	1	17	0	80	0.78
885462--885643	87	2.1	87	96	0	337	46	13	9	30	1.76
888077--888105	13	2.1	14	93	6	51	58	0	3	37	1.15
888109--888159	19	2.7	19	81	3	59	47	0	1	50	1.12
888213--888243	15	2.1	15	93	0	53	54	0	3	41	1.16
888773--888797	10	2.5	10	100	0	50	40	0	0	60	0.97
889813--889842	11	2.7	11	100	0	60	50	0	0	50	1.00
891307--891432	43	2.9	43	75	14	134	22	17	28	31	1.96
894701--894730	16	1.9	15	93	6	51	46	0	6	46	1.29
897117--897413	50	5.8	50	83	3	319	28	21	27	22	1.99
899703--899743	21	2.0	21	85	9	57	51	17	0	31	1.46
900380--900505	57	2.2	58	84	4	166	39	33	13	13	1.84
901318--901362	20	2.2	20	88	0	63	48	8	4	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901286--901362	40	1.9	40	81	0	91	45	7	10	36	1.67
901326--901365	20	2.0	20	100	0	80	45	5	5	45	1.47
901338--901394	30	1.9	30	85	7	80	43	3	7	45	1.48
902839--902871	11	3.1	11	86	8	50	45	0	0	54	0.99
903014--903069	19	3.0	19	71	10	53	28	1	7	62	1.32
903015--903074	18	3.3	18	73	13	52	25	1	6	66	1.25
910192--910283	39	2.3	39	88	5	132	25	28	22	23	2.00
910173--910336	40	4.1	40	80	10	176	24	27	23	25	2.00
914158--914205	21	2.3	21	89	7	71	18	39	18	22	1.92
913964--914252	147	2.0	147	92	0	479	22	31	20	24	1.98
918888--919139	90	2.8	89	79	8	233	28	16	22	32	1.96
919967--920072	44	2.4	46	75	10	112	26	0	22	50	1.56
919971--920071	23	4.6	21	71	18	71	25	0	22	50	1.55
919969--920154	66	2.8	66	85	0	237	29	0	19	50	1.52
920655--920726	36	2.0	36	94	0	126	38	8	30	22	1.83
927006--927243	50	4.7	50	80	7	230	28	20	28	23	1.99
927384--927428	22	2.0	22	100	0	90	40	13	8	37	1.76
933438--933470	16	2.0	17	88	5	50	39	24	3	33	1.71
942888--942919	12	2.7	12	100	0	64	43	6	0	50	1.27
946949--947085	42	3.3	41	80	4	132	43	18	15	22	1.87
948942--948974	17	1.9	17	100	0	66	12	6	3	78	1.04
951543--951582	20	2.0	20	95	0	71	37	5	7	50	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957765--957797	16	2.1	16	94	0	57	42	0	15	42	1.46
960189--960223	18	1.9	18	94	0	61	31	0	0	68	0.90
975034--975058	7	3.6	7	100	0	50	28	0	12	60	1.32
975710--975744	18	1.9	18	94	0	61	25	31	8	34	1.86
976128--976213	43	2.0	45	86	4	122	39	0	12	47	1.42
976181--976293	25	4.7	25	74	18	123	40	0	14	44	1.51
976138--976294	70	2.3	69	94	2	280	40	0	13	45	1.48
976303--976385	29	2.8	30	94	3	150	46	25	0	27	1.53
976361--976487	21	5.9	21	76	21	120	48	24	0	27	1.52
976317--976564	89	2.6	92	84	14	310	47	25	0	26	1.52
976373--976535	67	2.4	70	90	6	278	47	26	0	26	1.53
976480--977034	29	19.1	29	87	8	758	46	27	0	25	1.56
976981--977044	23	2.8	23	90	0	92	50	23	1	25	1.58
977041--977394	116	3.1	116	94	0	609	37	10	9	42	1.72
977370--977411	17	2.4	18	80	4	50	42	9	2	45	1.49
984944--985071	64	2.0	64	95	0	229	41	16	20	21	1.90
985323--985676	124	2.8	125	90	2	557	32	22	15	29	1.94
986937--986970	17	2.0	17	100	0	68	70	0	0	29	0.87
993429--993475	19	2.5	19	82	0	58	34	23	25	17	1.96
1000417--1000587	41	4.2	41	85	3	213	22	26	15	35	1.94
1007945--1008022	27	2.9	27	96	0	138	17	24	30	26	1.97
1007843--1008098	129	2.0	130	91	0	415	19	19	28	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013067--1013116	22	2.3	22	86	6	66	30	22	12	36	1.90
1019033--1019131	32	3.1	32	85	4	128	39	13	9	38	1.76
1027132--1027652	217	2.4	217	95	0	927	42	19	11	26	1.84
1042856--1043095	126	1.9	126	96	0	444	32	17	13	36	1.89
1054717--1054768	24	2.2	24	89	0	77	55	9	1	32	1.43
1059721--1059769	18	2.8	17	87	6	71	48	0	0	51	1.00
1059725--1059768	22	2.0	21	82	4	52	50	0	0	50	1.00
1062715--1062755	21	2.0	21	90	0	64	19	29	21	29	1.98
1068062--1068109	19	2.7	19	78	18	59	47	16	14	20	1.82
1071288--1071337	17	2.7	20	78	18	70	10	0	44	46	1.37
1075927--1075976	17	2.7	20	78	18	70	10	0	44	46	1.37
1077493--1077591	40	2.5	40	83	1	128	39	20	19	21	1.93
1077652--1077811	41	3.9	41	86	0	221	18	22	27	31	1.97
1078948--1078992	11	4.0	11	85	2	54	82	0	4	13	0.82
1078959--1078998	19	2.2	17	86	8	53	82	2	2	12	0.87
1079078--1079103	4	6.5	4	100	0	52	76	0	0	23	0.78
1085228--1085277	17	2.7	20	78	18	70	10	0	44	46	1.37
1089867--1089916	17	2.7	20	78	18	70	10	0	44	46	1.37
1094141--1094176	17	2.0	19	89	10	58	66	11	2	19	1.35
1094214--1094262	22	2.2	23	85	10	66	75	4	14	6	1.14
1105284--1105308	9	2.8	9	100	0	50	56	0	0	44	0.99
1109196--1109235	20	2.0	20	90	0	62	27	10	12	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1109181--1109247	34	1.9	35	90	3	109	31	8	13	46	1.74
1109175--1109251	14	5.0	15	71	20	52	33	9	14	42	1.77
1124127--1124202	37	2.2	33	82	15	93	38	17	27	17	1.91
1124137--1124210	37	2.0	37	97	0	139	36	16	29	17	1.92
1124699--1124745	21	2.2	22	92	3	78	21	19	38	21	1.94
1139089--1139141	3	17.7	3	80	7	63	62	1	5	30	1.29
1141011--1141398	88	4.4	88	97	0	717	25	23	21	29	1.99
1148700--1148736	3	12.3	3	100	0	74	67	0	0	32	0.91
1149638--1149677	20	2.0	20	85	9	55	2	17	25	55	1.55
1161615--1161697	29	2.9	28	82	7	96	22	4	4	67	1.29
1161651--1161688	18	2.2	17	90	4	58	26	0	2	71	1.00
1166335--1166516	91	2.0	91	98	0	355	31	18	17	32	1.94
1166647--1166712	33	2.0	33	100	0	132	36	21	6	36	1.78
1173272--1173342	33	2.1	35	86	5	101	47	18	7	26	1.74
1176279--1176381	3	34.3	3	94	0	179	66	30	0	1	1.08
1180124--1180224	50	2.0	50	100	0	202	40	17	17	23	1.91
1181258--1181438	90	2.0	90	90	0	281	30	1	15	51	1.53
1185588--1185642	16	3.4	16	87	5	76	40	5	21	32	1.76
1185628--1185717	44	2.0	46	85	8	123	33	5	23	37	1.78
1185868--1185944	36	2.1	37	80	7	86	46	2	1	49	1.23
1189036--1189096	21	2.9	21	73	4	61	37	24	18	19	1.94
1195110--1195312	46	4.3	48	88	7	265	35	14	21	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1195044--1195312	98	2.7	98	93	0	457	34	14	22	28	1.93
1195276--1195421	37	4.0	37	93	1	242	36	16	21	24	1.94
1196652--1196682	15	2.1	15	93	0	53	25	32	3	38	1.72
1200815--1200853	18	2.3	18	86	8	55	43	12	5	38	1.65
1201961--1202003	4	10.8	4	94	0	77	46	25	0	27	1.53
1203837--1203892	17	3.3	17	80	5	69	58	1	7	32	1.35
1203842--1203868	14	1.9	14	100	0	54	66	0	3	29	1.09
1207891--1207985	49	1.9	49	95	0	172	33	18	29	17	1.95
1210332--1210389	28	2.0	31	86	10	86	56	3	3	36	1.33
1210396--1210424	15	1.9	15	100	0	58	55	0	17	27	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126