genome.fa.s14.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  84  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25647483--25647558	17	4.6	17	71	15	70	55	1	2	40	1.22
25647976--25648015	19	2.1	19	86	9	55	32	5	5	57	1.42
25653797--25653858	17	3.6	17	74	8	54	29	27	19	24	1.98
25654477--25654501	6	4.2	6	100	0	50	16	36	0	48	1.46
25656483--25656520	18	2.2	18	95	4	69	52	0	5	42	1.24
25656935--25656976	19	2.2	19	86	0	57	38	7	14	40	1.73
25657027--25657080	28	1.9	28	85	7	74	35	0	12	51	1.40
25659899--25659950	15	3.6	14	73	12	52	23	3	0	73	1.00
25660929--25660980	15	3.6	14	73	12	52	23	3	0	73	1.00
25664683--25664717	6	5.8	6	96	0	52	17	0	8	74	1.06
25664682--25664720	6	6.5	6	93	0	51	15	0	7	76	0.99
25664682--25664720	12	3.2	12	88	0	60	15	0	7	76	0.99
25664738--25664779	17	2.4	17	88	4	57	30	4	0	64	1.14
25664737--25664770	11	3.0	11	87	8	50	35	5	0	58	1.22
25664738--25664779	6	7.2	6	83	5	50	30	4	0	64	1.14
25667904--25667975	35	2.1	35	86	5	101	29	16	9	44	1.80
25673988--25674143	42	3.7	41	75	2	141	46	16	20	17	1.84
25679902--25679934	4	8.0	4	96	3	57	24	0	3	72	0.98
25681471--25681615	42	3.5	42	81	3	150	44	16	22	16	1.86
25686651--25686675	13	1.9	13	100	0	50	36	16	0	48	1.46
25687704--25687749	23	1.9	24	82	8	58	28	13	28	30	1.94
25688009--25688102	49	1.9	49	93	0	161	39	20	4	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25688051--25688337	65	4.3	66	94	0	461	42	16	1	39	1.58
25694242--25694270	6	4.8	6	100	0	58	17	0	0	82	0.66
25694929--25694964	8	4.4	8	89	3	54	61	2	11	25	1.43
25697319--25697365	13	3.8	12	81	15	51	34	19	0	46	1.50
25700392--25700450	27	2.2	27	87	0	82	35	15	27	22	1.94
25709021--25709049	9	3.2	9	100	0	58	89	0	10	0	0.48
25712295--25712360	28	2.3	29	79	10	73	28	4	6	60	1.40
25718612--25719274	88	7.5	88	89	0	950	28	26	23	21	1.99
25718670--25718988	44	7.2	44	63	4	158	27	26	23	22	1.99
25718781--25718918	45	3.1	45	64	4	127	31	27	22	18	1.97
25719285--25719620	44	7.8	44	78	8	332	28	18	24	29	1.98
25719368--25719446	38	2.1	38	87	0	113	34	18	21	25	1.96
25719325--25719482	82	1.9	82	85	2	219	29	18	23	28	1.98
25719285--25719620	126	2.6	131	86	2	457	28	18	24	29	1.98
25721443--25721512	27	2.5	27	77	15	70	30	4	5	60	1.39
25732784--25732859	30	2.6	30	74	15	77	31	17	13	38	1.88
25733304--25733343	18	2.2	18	86	8	55	37	5	0	57	1.21
25734410--25734449	21	1.9	21	94	0	71	57	0	2	40	1.12
25738156--25738198	21	2.1	21	83	12	54	55	4	11	27	1.55
25740011--25740044	17	2.0	17	88	0	50	26	32	20	20	1.97
25759179--25759230	18	2.9	18	82	0	59	42	13	38	5	1.68
25759274--25759398	39	3.1	41	85	10	154	36	7	56	0	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25759274--25759398	21	6.3	19	76	19	105	36	7	56	0	1.33
25760682--25760722	15	2.8	15	85	10	50	48	0	9	41	1.36
25763852--25763937	23	3.7	23	83	9	93	55	1	1	41	1.14
25763869--25763911	14	3.4	14	70	29	51	58	0	0	41	0.98
25764114--25764148	16	2.2	16	89	0	52	37	25	0	37	1.57
25769106--25769142	18	2.0	19	89	5	58	24	0	29	45	1.53
25769389--25769431	22	2.0	22	90	9	70	23	9	20	46	1.79
25770264--25770300	17	2.2	17	95	0	65	10	21	45	21	1.82
25771620--25771676	26	2.3	25	78	6	62	63	3	1	31	1.22
25780195--25780247	23	2.3	23	96	0	97	24	20	24	30	1.99
25780476--25780508	15	2.1	16	88	5	50	45	0	12	42	1.41
25781420--25781545	63	2.0	63	96	0	234	25	20	23	30	1.99
25793265--25793545	138	2.0	138	94	1	492	40	7	7	44	1.62
25797015--25797165	51	3.0	50	75	12	148	25	17	26	31	1.97
25797150--25797241	45	2.0	45	87	4	132	27	18	22	31	1.97
25807505--25807541	19	2.0	19	89	5	58	56	8	0	35	1.29
25814736--25814772	17	2.1	19	90	10	60	29	10	2	56	1.47
25822176--25822232	21	2.7	21	97	0	105	49	12	8	29	1.70
25823040--25823092	14	3.7	14	78	12	54	52	0	5	41	1.25
25823510--25823624	44	2.6	44	78	11	128	25	17	26	30	1.97
25825626--25825661	18	2.0	18	88	0	54	47	13	13	25	1.80
25826501--25826541	15	2.7	15	92	0	64	34	21	29	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25836345--25836402	29	2.0	29	93	0	98	22	31	22	24	1.99
25851624--25851676	27	2.0	27	100	0	106	49	20	11	18	1.78
25855167--25855308	25	5.7	24	68	12	81	33	21	24	20	1.97
25860052--25860093	18	2.2	20	87	8	61	30	11	7	50	1.66
25881672--25881700	9	3.2	9	100	0	58	68	0	0	31	0.89
25882234--25882270	9	4.1	9	92	0	65	29	10	13	45	1.77
25883040--25883095	22	2.5	22	80	8	60	46	17	3	32	1.66
25883051--25883094	22	2.0	22	90	4	70	40	18	4	36	1.71
25888529--25888641	37	3.1	37	76	13	92	50	3	4	41	1.39
25890255--25890286	15	2.1	15	94	0	55	68	9	6	15	1.36
25895323--25895347	13	1.9	13	100	0	50	64	4	0	32	1.12
25895394--25895444	16	3.2	16	70	13	52	47	3	0	49	1.20
25897050--25897083	17	2.0	17	88	0	50	70	5	0	23	1.09
25904892--25904960	35	2.0	35	88	5	104	14	13	21	50	1.76
25910751--25910830	31	2.6	30	79	11	83	46	5	13	35	1.65
25912269--25912414	50	2.9	50	84	0	184	22	28	21	26	1.99
25912219--25912466	50	4.9	50	78	5	178	24	27	20	28	1.99
25923297--25923491	50	3.9	50	88	0	264	22	30	21	26	1.99
25927521--25927583	21	3.0	22	76	17	71	25	22	15	36	1.94
25929536--25929578	18	2.3	19	84	4	52	53	13	4	27	1.60
25930524--25930579	27	2.1	27	93	0	94	37	8	16	37	1.80
25932153--25932209	27	2.0	29	86	6	82	40	3	5	50	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25932409--25932461	10	5.4	9	79	20	54	58	0	0	41	0.98
25932391--25932467	20	3.8	20	80	17	88	57	1	1	40	1.15
25936048--25936260	112	1.9	108	91	3	345	25	20	23	31	1.98
25936877--25937358	90	5.4	88	85	6	528	24	7	15	52	1.67
25936925--25937308	180	2.1	180	90	2	612	25	7	16	51	1.71
25939888--25939921	6	5.8	6	96	3	61	17	29	0	52	1.45
25940065--25940149	23	3.5	23	75	17	82	34	18	0	47	1.49
25940061--25940133	11	6.7	10	73	16	56	30	19	0	50	1.48
25940220--25940275	17	3.0	20	77	20	66	23	12	0	64	1.27
25940302--25940341	21	1.9	21	89	0	62	25	7	2	65	1.32
25940572--25940648	27	3.0	27	69	23	85	23	12	0	63	1.29
25940581--25940629	22	2.2	21	85	7	62	24	12	0	63	1.29
25940844--25940911	35	1.9	36	87	3	102	22	25	29	23	1.99
25940853--25940925	36	2.1	35	81	2	83	23	27	27	21	1.99
25941070--25941306	44	5.4	44	93	2	386	37	2	10	49	1.52
25957116--25957214	49	2.0	49	96	0	180	37	16	17	29	1.91
25971607--25971676	27	2.6	27	81	4	88	30	28	25	15	1.96
25971719--25971859	4	36.0	4	74	13	64	66	0	31	1	1.00
25971772--25971836	20	3.2	20	73	14	71	67	0	32	0	0.91
25971745--25971890	41	3.5	41	81	13	181	68	0	31	0	0.90
25971808--25971900	16	6.1	16	70	16	63	66	0	33	0	0.92
25971754--25971906	41	3.6	42	76	13	152	67	0	32	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25971783--25971920	5	27.8	5	69	19	51	69	0	30	0	0.89
25971750--25971922	85	2.1	83	84	6	224	68	0	31	0	0.90
25972327--25973114	394	2.0	394	99	0	1549	49	7	14	27	1.71
25973104--25973135	15	2.1	15	100	0	64	53	0	6	40	1.26
25977590--25977628	18	2.2	18	95	0	69	15	51	2	30	1.57
25978250--25978330	34	2.3	35	83	10	103	54	9	0	35	1.34
25978245--25978334	36	2.4	38	76	16	89	54	11	0	34	1.36
25978627--25978655	10	2.7	11	89	10	51	0	27	0	72	0.85
25978845--25978913	28	2.4	29	92	4	115	47	1	10	40	1.46
25980057--25980108	24	2.2	24	89	0	77	32	1	7	57	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126