genome.fa.s14.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  123  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38243307--38243429	60	2.0	60	81	3	140	19	25	26	29	1.99
38250195--38250246	20	2.6	20	84	0	68	30	11	11	46	1.76
38252649--38252691	16	2.7	16	92	0	68	27	32	11	27	1.92
38278434--38278459	6	4.3	6	100	0	52	15	0	0	84	0.62
38286860--38287037	27	6.6	27	84	3	205	29	28	15	26	1.96
38286881--38287036	82	1.9	81	88	3	233	29	28	15	26	1.96
38300534--38300604	22	3.3	22	74	4	81	40	0	5	53	1.24
38311091--38311855	275	2.8	276	89	2	1140	36	16	20	27	1.93
38320532--38320610	3	26.3	3	100	0	158	0	32	0	67	0.91
38322328--38322407	27	3.0	27	77	3	81	21	31	26	21	1.98
38323179--38323230	27	1.9	27	96	0	95	23	21	9	46	1.80
38324454--38324610	61	2.6	59	85	7	185	44	2	1	51	1.23
38327333--38327457	64	2.0	64	91	0	205	30	36	12	21	1.90
38331800--38331842	21	2.0	21	100	0	86	27	13	13	44	1.83
38348611--38348685	36	2.1	37	84	2	98	34	4	5	56	1.41
38358316--38358354	20	2.0	20	89	0	60	23	10	10	56	1.63
38358460--38358529	36	1.9	36	91	0	113	37	14	17	31	1.89
38359221--38359277	20	3.0	20	75	17	66	43	17	8	29	1.79
38359242--38359294	18	2.8	20	77	5	56	43	16	5	33	1.72
38359222--38359294	38	1.9	38	91	0	119	43	16	6	32	1.74
38359278--38359315	20	1.9	20	88	0	58	42	7	2	47	1.46
38359637--38359735	50	2.0	50	84	4	128	43	12	13	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38359798--38359855	29	2.0	29	89	0	89	37	31	5	25	1.78
38361357--38361391	11	3.2	11	95	0	61	25	2	34	37	1.71
38364004--38364091	30	2.9	30	91	0	140	29	21	26	22	1.99
38364210--38364297	26	3.4	26	73	4	79	39	20	19	20	1.92
38364478--38364890	27	15.3	27	82	5	453	18	19	18	43	1.88
38369294--38369326	13	2.5	13	95	5	57	15	15	0	69	1.19
38387714--38387797	41	2.0	41	97	0	159	45	22	21	10	1.82
38391946--38391999	15	3.4	15	76	14	54	18	18	20	42	1.89
38391936--38392000	33	2.0	33	96	0	121	18	16	21	43	1.88
38391936--38391989	18	3.2	18	74	15	69	16	18	22	42	1.89
38392329--38392529	101	2.0	101	99	0	393	33	17	28	19	1.95
38392710--38392920	106	2.0	106	98	0	404	23	24	24	27	2.00
38394950--38395568	310	2.0	310	99	0	1211	30	20	22	26	1.98
38396279--38396419	71	2.0	71	98	0	273	22	26	17	32	1.97
38396593--38396651	31	1.9	31	96	0	109	23	27	23	25	2.00
38400966--38401017	16	3.3	15	84	10	68	38	0	1	59	1.08
38400966--38401008	17	2.7	16	86	10	61	39	0	2	58	1.11
38400970--38401019	25	2.0	26	88	11	77	40	0	4	56	1.18
38411687--38411935	125	2.0	126	95	0	455	30	16	20	32	1.95
38416507--38416819	159	2.0	159	96	0	581	33	18	20	27	1.96
38418436--38418551	58	2.0	58	98	0	223	41	18	18	21	1.91
38432771--38432948	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38432772--38432927	82	1.9	81	88	3	233	26	15	28	29	1.96
38432768--38432948	82	2.2	81	83	2	229	27	15	27	29	1.96
38440993--38441065	37	2.0	37	94	0	128	28	24	21	24	1.99
38445758--38445911	78	2.0	78	94	0	272	29	21	37	11	1.89
38454675--38454725	25	2.0	25	96	0	93	27	21	27	23	1.99
38455660--38455733	37	2.0	37	97	0	139	36	10	25	27	1.89
38458729--38459350	311	2.0	311	97	0	1181	33	27	16	22	1.95
38462255--38462364	55	2.0	55	98	0	211	50	9	24	16	1.74
38463601--38463862	130	2.0	130	98	0	506	34	21	20	24	1.97
38466662--38466689	14	2.0	14	100	0	56	14	14	0	71	1.15
38466681--38466736	11	5.1	11	82	10	62	32	3	10	53	1.53
38466686--38466756	6	12.2	6	76	21	71	32	1	15	50	1.53
38466678--38466733	27	2.1	27	93	0	94	30	5	8	55	1.53
38466681--38466724	22	2.0	22	91	8	72	31	4	9	54	1.52
38466686--38466736	16	3.1	16	85	5	66	33	1	11	52	1.49
38466721--38466759	20	2.0	20	100	0	78	30	0	23	46	1.53
38476243--38476304	32	1.9	32	96	0	115	38	22	9	29	1.86
38476648--38476917	135	2.0	135	96	0	495	28	27	18	26	1.98
38479633--38479664	15	2.1	15	100	0	64	40	0	25	34	1.56
38485969--38486012	22	2.0	22	100	0	88	54	4	22	18	1.61
38488243--38488317	32	2.4	31	84	8	91	38	6	4	50	1.47
38488397--38488438	21	2.0	21	81	9	50	69	4	2	23	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38489191--38489499	154	2.0	154	97	0	582	41	17	15	25	1.88
38490237--38490288	16	3.2	16	94	0	86	21	11	15	51	1.74
38492862--38493013	17	8.4	18	68	25	65	62	0	3	33	1.16
38492862--38492978	25	4.8	24	75	10	94	63	0	3	32	1.17
38492862--38493009	13	12.3	13	73	18	83	62	0	3	33	1.17
38492863--38493007	23	6.4	22	67	24	72	62	0	3	33	1.17
38492867--38493007	25	5.5	27	70	17	79	61	0	3	34	1.18
38492868--38492974	29	3.6	30	73	15	80	61	0	3	33	1.20
38492966--38493013	14	3.1	17	69	25	52	62	0	2	35	1.07
38493389--38493416	13	2.2	13	100	0	56	46	0	7	46	1.30
38493486--38493513	13	2.2	13	100	0	56	46	0	7	46	1.30
38493355--38493548	97	2.0	97	98	0	379	40	8	7	43	1.63
38493684--38493757	21	3.5	20	77	14	53	29	5	0	64	1.15
38493787--38493825	17	2.3	17	86	8	53	23	2	5	69	1.21
38493886--38493945	31	1.9	31	100	0	120	43	0	8	48	1.33
38493992--38494023	15	2.0	17	88	11	50	31	3	9	56	1.47
38494116--38494172	27	2.1	28	90	3	89	43	7	7	42	1.58
38494642--38494684	18	2.4	18	88	0	59	69	6	13	9	1.35
38498538--38498567	15	1.9	16	93	6	53	33	6	13	46	1.69
38499229--38499272	22	1.9	22	86	9	61	38	13	4	43	1.65
38499432--38499494	24	2.6	25	82	2	74	23	23	28	23	2.00
38503274--38503304	14	2.2	14	100	0	62	32	6	6	54	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38506902--38507004	26	4.0	26	93	0	170	51	1	6	39	1.40
38507364--38507445	40	2.0	40	83	4	103	14	18	24	42	1.87
38511078--38511287	104	2.0	103	96	0	384	30	21	10	37	1.87
38511312--38511464	42	3.6	42	78	7	123	32	26	17	23	1.97
38523118--38523167	22	2.4	20	75	18	57	66	14	4	16	1.40
38529075--38529104	10	3.0	10	100	0	60	70	0	30	0	0.88
38530515--38530542	6	4.7	6	100	0	56	85	0	14	0	0.59
38531846--38532127	142	2.0	142	100	0	564	41	12	9	37	1.74
38532102--38532162	27	2.3	27	97	0	113	42	11	11	34	1.77
38535789--38535831	13	3.2	13	80	6	50	62	6	0	30	1.21
38537710--38537776	30	2.2	31	81	2	82	71	2	4	20	1.17
38539481--38540037	44	12.8	44	70	11	292	27	21	20	30	1.98
38539373--38540041	217	3.1	215	90	2	1007	27	21	20	30	1.98
38540292--38540376	44	1.9	44	97	0	161	30	29	16	23	1.96
38540382--38540647	88	3.0	88	92	0	442	24	25	23	27	2.00
38540382--38540609	44	5.2	45	69	8	171	23	25	23	28	2.00
38548432--38548590	87	1.8	87	93	2	275	54	7	7	30	1.57
38548657--38548691	18	1.9	18	94	0	61	65	8	0	25	1.21
38550944--38550993	18	2.7	19	72	12	50	46	8	2	44	1.44
38552495--38552620	51	2.5	51	82	0	162	40	6	13	39	1.70
38557609--38557643	13	2.8	12	83	8	52	31	11	0	57	1.34
38558010--38558110	44	2.4	40	75	19	98	35	25	5	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38558094--38558163	16	4.4	16	77	0	68	27	22	2	47	1.66
38558094--38558163	32	2.2	32	84	0	86	27	22	2	47	1.66
38559555--38559610	24	2.3	24	96	0	103	66	7	8	17	1.42
38559717--38559783	19	3.3	20	84	12	84	34	0	1	64	1.03
38559719--38559783	20	3.3	18	81	14	76	33	0	1	64	1.03
38567275--38567331	27	2.1	27	96	0	105	35	21	12	31	1.90
38571820--38571857	18	2.1	18	90	0	58	36	2	31	28	1.71
38571858--38571927	35	2.0	35	100	0	140	25	0	34	40	1.56
38576473--38576506	13	2.5	14	90	4	52	32	0	0	67	0.91
38582484--38582683	62	3.2	59	75	17	188	52	3	3	40	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126