genome.fa.s14.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  108  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32911854--32912021	46	3.7	46	83	4	187	17	19	16	46	1.84
32911854--32912159	45	6.8	45	74	12	157	19	20	16	43	1.89
32927187--32927230	17	2.5	18	88	3	63	61	15	4	18	1.50
32927886--32928001	23	5.0	23	72	17	87	55	2	6	35	1.41
32927898--32928001	24	4.4	24	70	18	76	56	2	5	34	1.38
32929108--32929151	17	2.4	19	81	14	56	22	2	15	59	1.48
32941038--32941072	18	2.0	17	88	5	52	65	8	8	17	1.44
32941705--32941798	23	4.0	24	71	15	72	54	2	9	34	1.45
32941732--32941824	46	2.0	48	83	12	122	55	2	6	35	1.37
32941736--32941839	24	4.4	23	71	18	79	56	1	5	35	1.34
32942891--32942926	17	2.1	17	89	0	54	13	8	30	47	1.73
32942919--32942966	17	2.7	18	84	12	55	25	0	20	54	1.45
32944201--32944231	4	7.8	4	100	0	62	74	0	0	25	0.82
32950780--32950881	50	2.0	50	96	0	186	27	18	18	35	1.95
32955572--32955620	24	2.1	23	84	3	62	28	18	22	30	1.97
32957167--32957210	22	2.0	23	81	4	54	31	0	13	54	1.39
32963976--32964034	26	2.2	26	81	3	64	44	11	16	27	1.83
32968638--32968720	40	2.1	40	93	0	139	45	16	21	15	1.85
32968993--32969045	27	2.0	27	96	0	97	22	11	33	32	1.90
32975026--32975085	30	2.0	30	83	6	77	15	1	10	73	1.17
32976757--32976904	49	3.0	49	98	0	287	38	17	10	33	1.85
32977687--32977807	47	2.6	47	89	0	179	28	31	7	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32984623--32984751	40	3.2	40	88	2	197	24	20	27	27	1.99
32984577--32984750	80	2.2	81	84	10	225	24	20	27	27	1.99
32984604--32984788	80	2.3	79	79	13	200	26	20	26	26	1.99
32992487--32992696	40	5.3	39	89	4	242	25	21	27	25	1.99
32992434--32992696	120	2.2	120	82	4	309	25	21	27	25	1.99
32992435--32992731	80	3.7	80	81	6	230	26	21	27	24	1.99
32994387--32994429	21	2.1	21	86	4	61	48	23	2	25	1.62
33009452--33009497	24	1.9	24	82	8	58	10	23	15	50	1.75
33014496--33014673	27	6.6	27	83	3	205	26	15	28	29	1.96
33014497--33014652	82	1.9	81	88	3	233	26	15	28	29	1.96
33014493--33014673	82	2.2	81	83	2	229	27	15	27	29	1.96
33025069--33025156	27	3.3	26	82	7	97	31	12	14	40	1.84
33025111--33025192	26	3.1	26	87	3	128	29	9	21	39	1.86
33025086--33025192	53	2.0	53	87	3	153	30	10	18	40	1.84
33025110--33025188	27	3.0	27	88	1	124	29	10	21	39	1.86
33036253--33036340	27	3.3	26	82	7	97	31	12	14	40	1.84
33036295--33036376	26	3.1	26	87	3	128	29	9	21	39	1.86
33036270--33036376	53	2.0	53	87	3	153	30	10	18	40	1.84
33036294--33036372	27	3.0	27	88	1	124	29	10	21	39	1.86
33047130--33047486	89	4.0	89	99	0	696	23	12	15	47	1.80
33051205--33051291	44	2.0	44	90	0	138	29	13	20	35	1.92
33051205--33051334	44	2.8	46	81	8	131	29	13	20	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33054499--33054831	47	7.1	47	96	0	594	36	12	26	25	1.91
33056025--33056119	40	2.4	40	94	0	163	26	18	26	28	1.98
33056025--33056139	40	2.9	40	85	3	153	26	20	25	27	1.99
33056179--33056314	29	4.8	29	76	2	123	22	15	29	32	1.95
33056147--33056335	57	3.3	57	84	2	229	22	17	30	30	1.96
33056151--33056307	28	5.5	28	75	6	136	21	17	29	31	1.96
33070257--33072106	927	2.0	926	92	1	3082	29	20	18	31	1.97
33080640--33080684	14	3.1	14	84	15	65	77	4	0	17	0.92
33080649--33080679	10	3.1	10	95	0	53	80	3	0	16	0.83
33087073--33087180	12	8.8	12	73	7	56	75	5	8	11	1.19
33087148--33087210	12	5.5	11	81	12	56	74	0	19	6	1.02
33088070--33088097	13	2.2	13	100	0	56	71	0	14	14	1.15
33089280--33090005	88	8.3	87	83	3	789	27	24	24	23	2.00
33089280--33090005	175	4.1	175	83	5	806	27	24	24	23	2.00
33089280--33089999	263	2.7	262	82	4	840	28	24	24	22	2.00
33090764--33090818	27	2.0	28	82	3	67	41	34	5	18	1.73
33106255--33106439	79	2.3	81	84	7	236	24	22	27	25	2.00
33106256--33106439	40	4.6	40	83	9	216	24	22	27	25	2.00
33106256--33106472	79	2.7	79	81	7	201	25	22	27	24	2.00
33114203--33114428	40	5.7	40	90	2	303	24	22	28	25	1.99
33121907--33121973	10	6.6	10	80	13	66	25	32	17	23	1.97
33121905--33121973	31	2.3	29	90	7	102	24	33	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33121925--33122003	20	4.0	20	83	6	97	25	31	17	25	1.97
33121917--33122011	40	2.4	40	85	7	122	25	30	17	26	1.98
33121914--33121974	10	5.9	11	79	14	76	26	31	18	24	1.97
33123930--33124192	40	6.6	39	86	4	278	25	27	21	25	1.99
33123930--33124192	120	2.2	119	82	4	307	25	27	21	25	1.99
33124124--33124201	40	1.9	41	82	10	97	26	28	20	24	1.99
33131876--33132138	40	6.6	39	86	4	278	25	27	21	25	1.99
33131876--33132138	120	2.2	119	82	4	307	25	27	21	25	1.99
33132070--33132147	40	1.9	41	82	10	97	26	28	20	24	1.99
33136483--33136767	81	3.5	81	82	2	342	17	20	20	42	1.89
33136489--33136762	27	10.1	27	81	3	291	17	18	20	43	1.88
33143807--33143878	26	2.8	26	82	0	90	45	23	15	15	1.84
33144054--33144304	27	9.3	26	84	6	186	19	19	16	44	1.87
33144055--33144304	54	4.6	53	78	6	245	19	19	16	44	1.86
33144073--33144304	81	2.9	81	75	12	217	19	19	15	44	1.86
33147359--33147394	18	1.9	19	88	5	56	16	2	0	80	0.83
33167626--33167657	16	2.0	16	93	0	55	25	15	0	59	1.36
33167883--33168074	51	3.8	51	76	11	196	32	23	16	27	1.96
33167883--33168066	101	1.8	102	86	3	273	32	22	16	27	1.96
33169241--33169384	72	2.0	72	100	0	288	26	23	15	34	1.94
33186966--33187074	54	2.0	54	96	0	200	29	11	28	31	1.91
33194552--33194874	161	2.0	161	100	0	646	38	17	13	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33198228--33198368	50	2.8	49	80	6	140	29	22	26	20	1.99
33199217--33199494	41	6.8	41	80	0	250	23	21	25	29	1.99
33199918--33199950	14	2.3	15	94	5	59	27	0	36	36	1.57
33199983--33200024	21	2.0	21	86	9	59	26	0	45	28	1.54
33200191--33200233	14	3.0	15	80	10	54	18	0	46	34	1.50
33204924--33205116	43	4.5	43	88	2	282	25	16	33	25	1.96
33204924--33205116	85	2.3	86	89	1	298	25	16	33	25	1.96
33219695--33219879	79	2.3	81	83	7	227	24	22	27	24	2.00
33219696--33219879	40	4.6	40	82	9	207	25	22	27	24	2.00
33219748--33219912	79	2.1	79	83	6	201	26	21	27	24	1.99
33227674--33227858	79	2.3	81	84	7	236	24	22	27	25	2.00
33227675--33227858	40	4.6	40	83	9	216	24	22	27	25	2.00
33227727--33227891	79	2.1	79	84	6	210	26	21	27	25	1.99
33228764--33230461	850	2.0	850	99	0	3387	30	16	21	30	1.96
33243692--33243725	16	2.2	15	89	5	50	47	0	2	50	1.16
33246548--33246586	5	7.8	5	94	0	60	84	12	2	0	0.72
33252534--33252602	21	3.3	21	70	11	70	28	14	33	23	1.94
33252525--33252720	41	4.8	40	76	12	155	31	13	28	26	1.94
33262949--33263054	40	2.7	40	81	0	140	35	16	30	16	1.92
33270485--33270517	11	3.0	11	100	0	66	54	9	18	18	1.69
33287440--33287701	39	6.7	40	87	7	337	25	22	27	24	2.00
33299159--33299348	40	4.8	40	75	5	186	33	17	27	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33304339--33304521	32	5.7	31	78	7	138	37	24	19	19	1.94
33304528--33304577	26	1.9	26	83	0	64	38	24	20	18	1.93
33304556--33304628	27	2.7	27	81	6	87	34	21	23	20	1.97
33304699--33304751	24	2.2	23	77	9	61	49	26	3	20	1.66
33304740--33304813	27	2.9	25	75	16	64	39	22	16	21	1.92
33304815--33305474	27	24.6	27	82	3	452	23	18	20	38	1.93
33304815--33305474	81	8.2	81	79	6	515	23	18	20	38	1.93
33311067--33311100	4	8.0	4	90	9	50	23	0	2	73	0.97
33311050--33311109	22	2.7	22	73	19	61	26	0	6	66	1.16
33319305--33319482	27	6.6	27	83	3	205	26	15	28	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126