genome.fa.s14.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  18  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5198762--5198912	75	2.0	75	100	0	302	40	11	19	27	1.87
5205447--5205481	4	8.8	4	100	0	70	51	22	0	25	1.48
5205857--5205885	6	4.8	6	100	0	58	48	17	0	34	1.47
5206641--5206688	24	2.0	24	88	8	71	25	0	18	56	1.42
5208389--5208414	11	2.4	11	100	0	52	38	7	0	53	1.30
5208373--5208506	39	3.4	39	82	9	157	30	2	0	66	1.09
5210751--5210817	31	2.2	31	84	7	84	38	11	2	46	1.56
5210764--5210875	31	3.7	29	75	7	98	41	8	2	47	1.49
5212615--5212653	19	2.0	20	85	5	53	48	0	2	48	1.15
5219793--5219860	34	2.0	34	100	0	136	32	8	20	38	1.84
5220910--5220970	31	2.0	31	90	0	95	49	1	4	44	1.33
5221819--5221892	37	2.0	37	81	5	87	31	18	8	41	1.80
5222823--5223294	182	2.6	182	90	1	721	33	12	20	32	1.91
5223123--5223653	207	2.6	203	83	3	643	31	11	22	34	1.90
5227600--5227802	46	4.3	48	88	7	265	35	14	21	28	1.92
5227534--5227802	98	2.7	98	93	0	457	34	14	22	28	1.93
5227766--5227911	37	4.0	37	93	1	242	36	16	21	24	1.94
5229877--5230214	168	2.0	168	82	4	405	26	12	15	44	1.83
5230516--5230847	86	3.9	85	86	4	389	31	8	17	42	1.79
5230868--5230952	40	2.1	40	84	4	109	30	7	12	49	1.68
5231381--5231451	29	2.5	29	77	11	74	29	9	22	38	1.86
5233506--5233576	29	2.5	29	77	11	74	29	9	22	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5246549--5246591	22	2.0	22	90	0	68	46	16	2	34	1.60
5250281--5250325	22	2.0	22	91	0	72	48	15	2	33	1.57
5259614--5259669	8	6.8	8	74	22	53	39	0	1	58	1.08
5271164--5271213	14	3.7	14	80	19	54	4	24	0	72	1.02
5271645--5272030	192	2.0	194	81	7	453	33	15	12	38	1.85
5273178--5273288	30	3.8	29	68	13	84	41	8	6	44	1.59
5273252--5273314	30	2.0	32	82	14	78	39	11	7	41	1.70
5284757--5284822	30	2.2	30	81	5	80	43	12	6	37	1.67
5293723--5293769	12	4.0	12	75	2	51	51	2	0	46	1.13
5296803--5297133	69	5.0	67	72	12	236	35	18	6	40	1.76
5299534--5299559	10	2.6	10	100	0	52	30	7	7	53	1.57
5305003--5305044	10	4.3	9	85	14	57	83	0	2	14	0.75
5305003--5305044	19	2.2	20	86	4	59	83	0	2	14	0.75
5305959--5306002	14	3.1	15	74	12	56	29	0	0	70	0.88
5307738--5307783	17	2.8	16	83	3	56	56	0	2	41	1.11
5308185--5308243	26	2.3	26	82	8	68	55	1	3	38	1.26
5316075--5316110	18	2.0	18	88	0	54	75	16	0	8	1.04
5338573--5338701	61	2.1	61	100	0	258	26	9	13	50	1.72
5340191--5340233	19	2.3	19	92	8	70	39	6	16	37	1.75
5365127--5365158	7	4.6	7	100	0	64	12	0	43	43	1.42
5365492--5365542	25	2.0	25	100	0	102	45	3	23	27	1.70
5365497--5365552	25	2.2	25	90	3	85	50	3	21	25	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5368343--5368372	7	4.3	7	100	0	60	26	56	0	16	1.40
5389367--5389407	21	1.9	22	85	5	57	26	19	31	21	1.97
5393400--5393460	30	1.9	32	83	9	81	24	11	14	49	1.77
5396856--5396913	29	2.0	29	96	0	107	31	15	20	32	1.94
5401838--5401875	6	6.8	6	82	17	55	0	65	15	18	1.27
5401943--5401979	14	2.6	14	86	0	56	2	27	0	70	1.01
5420529--5420585	28	2.0	28	100	0	114	36	10	17	35	1.84
5424652--5424710	21	3.1	21	72	27	76	20	22	5	52	1.65
5424670--5424699	15	2.0	15	100	0	60	20	13	6	60	1.55
5428018--5428079	32	1.9	32	100	0	124	35	8	25	30	1.85
5428115--5428206	28	3.4	27	73	11	82	29	18	8	43	1.80
5429151--5429180	3	10.0	3	100	0	60	0	33	0	66	0.92
5440710--5440765	22	2.5	23	82	2	69	51	1	1	44	1.22
5440741--5440780	16	2.5	16	91	0	62	47	2	7	42	1.45
5440837--5440864	9	3.1	9	100	0	56	32	0	10	57	1.33
5440961--5441004	24	1.9	24	90	9	74	61	2	0	36	1.09
5442180--5442236	25	2.3	25	84	0	69	40	12	5	42	1.65
5442497--5442565	23	3.0	23	89	4	104	33	21	26	18	1.97
5446318--5446393	28	2.7	28	83	0	98	30	18	17	34	1.94
5449081--5449112	15	2.1	15	100	0	64	37	0	12	50	1.41
5449130--5449196	31	2.2	30	79	10	73	38	10	13	37	1.79
5449147--5449209	31	2.0	31	96	0	117	33	11	12	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5449301--5449374	36	2.1	36	97	0	139	45	16	16	21	1.84
5453748--5453772	11	2.3	11	100	0	50	44	16	12	28	1.83
5458998--5459173	88	2.0	88	94	0	307	26	22	11	38	1.89
5462175--5462202	2	14.0	2	100	0	56	0	0	50	50	1.00
5462206--5462230	2	12.5	2	100	0	50	48	0	52	0	1.00
5477449--5477590	74	1.9	75	89	4	225	47	12	7	32	1.70
5492245--5492271	5	5.4	5	100	0	54	44	55	0	0	0.99
5492620--5492737	59	2.0	59	100	0	236	35	11	16	35	1.86
5496460--5496510	27	1.9	26	88	11	77	58	0	31	9	1.30
5499013--5499037	3	8.3	3	100	0	50	68	0	0	32	0.90
5499658--5499701	14	3.1	14	86	3	61	40	0	4	54	1.21
5501388--5501562	41	4.3	42	86	5	121	22	26	19	30	1.98
5501415--5501576	41	4.0	41	91	1	236	22	27	20	29	1.99
5514307--5514369	29	2.2	29	82	5	74	61	4	1	31	1.26
5517334--5517758	81	5.2	81	85	4	554	36	16	15	32	1.90
5517333--5517758	163	2.6	162	84	5	572	36	16	15	31	1.90
5526323--5526351	4	7.2	4	100	0	58	75	0	0	24	0.80
5527489--5527513	6	4.2	6	100	0	50	16	36	16	32	1.90
5530054--5530086	4	8.2	4	100	0	66	48	24	0	27	1.51
5535260--5535310	12	4.2	12	73	9	50	29	7	1	60	1.36
5535269--5535340	33	2.2	32	80	4	81	30	9	1	58	1.39
5546217--5546302	45	1.9	45	87	0	127	32	22	16	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5546299--5546494	51	3.9	50	73	4	187	31	28	16	23	1.96
5551311--5551383	36	2.1	36	84	5	96	26	5	2	65	1.27
5551344--5551392	12	4.4	11	77	12	55	26	2	2	69	1.10
5551428--5551486	9	6.4	9	74	16	50	30	3	1	64	1.20
5551440--5551501	24	2.5	26	81	7	83	33	1	1	62	1.14
5551468--5551508	14	2.8	16	82	14	52	31	0	4	63	1.15
5553218--5553409	21	9.1	21	68	7	102	43	16	21	17	1.87
5553216--5553409	42	4.6	42	78	6	185	43	16	22	18	1.88
5553218--5553415	85	2.3	84	83	2	245	43	16	22	17	1.87
5558362--5558950	82	7.3	80	93	2	968	35	19	16	27	1.94
5558362--5558928	161	3.5	161	97	0	1044	34	20	17	27	1.95
5558362--5558950	243	2.4	239	92	3	973	35	19	16	27	1.94
5565962--5566013	17	3.2	16	76	13	52	51	7	7	32	1.59
5566019--5566071	19	3.1	16	72	17	52	43	11	15	30	1.81
5566539--5566613	14	5.6	14	73	19	61	0	22	0	77	0.77
5566734--5566776	17	2.5	17	88	7	52	0	2	13	83	0.74
5566744--5566777	6	5.8	6	93	6	61	0	0	14	85	0.60
5566741--5566777	11	3.4	11	92	7	58	0	0	13	86	0.57
5566841--5566884	22	2.0	22	86	0	61	4	13	0	81	0.83
5566852--5566906	3	19.0	3	88	3	69	0	25	0	74	0.82
5567250--5567378	29	4.4	29	78	7	102	41	3	19	36	1.67
5567373--5567403	16	1.9	16	93	0	53	16	0	3	80	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5570383--5570420	18	2.2	17	90	4	58	44	0	2	52	1.14
5570736--5570775	20	2.1	19	86	13	55	52	2	0	45	1.14
5570726--5570791	22	3.0	22	74	17	66	53	1	0	45	1.09
5581856--5581915	22	2.8	20	76	16	59	55	3	3	38	1.33
5581853--5581924	12	6.4	12	72	13	55	55	2	2	38	1.29
5581872--5581924	11	4.7	11	74	4	52	52	3	1	41	1.30
5582364--5582434	20	3.8	19	73	15	60	32	1	1	64	1.11
5584334--5584425	46	2.0	46	100	0	184	39	15	15	30	1.88
5587062--5587118	29	2.0	29	86	6	80	73	1	17	7	1.14
5587574--5587607	5	6.8	5	93	0	59	20	0	17	61	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126