genome.fa.s14.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  125  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38961493--38961521	12	2.3	13	94	5	51	68	0	0	31	0.89
38961493--38961522	13	2.3	13	94	0	51	70	0	0	30	0.88
38961633--38961692	20	3.2	20	63	36	53	55	6	5	33	1.48
38961631--38961709	35	2.2	36	93	2	133	56	5	6	31	1.46
38962276--38962335	30	2.0	30	86	0	84	30	21	8	40	1.83
38964558--38964642	24	3.5	24	75	9	66	42	5	37	14	1.69
38970067--38970091	10	2.5	10	100	0	50	20	0	24	56	1.43
38974034--38974081	22	2.0	24	84	11	64	50	2	8	39	1.44
38978570--38979674	138	8.1	137	86	3	1553	39	8	6	45	1.59
38978570--38979674	274	4.0	274	95	1	1912	39	8	6	45	1.59
38981003--38981034	15	2.2	15	94	5	57	50	0	31	18	1.48
38982924--38982951	12	2.3	12	100	0	56	46	28	0	25	1.53
38988074--38988245	32	5.4	32	85	3	204	40	18	18	23	1.91
38988255--38988326	26	2.8	26	89	0	108	38	25	19	16	1.92
38988314--38988373	27	2.2	27	88	11	88	31	21	25	21	1.98
38988521--38988664	54	2.7	54	83	4	168	25	23	18	32	1.97
38988520--38988664	27	5.4	27	79	5	152	26	23	17	32	1.97
39005681--39005749	3	23.0	3	84	0	93	33	7	0	59	1.25
39006944--39006992	23	2.1	23	85	7	64	10	18	0	71	1.13
39025854--39025899	20	2.3	18	82	17	56	43	2	2	52	1.25
39029613--39029666	24	2.2	24	86	3	72	40	12	27	18	1.87
39032385--39032461	29	2.6	29	81	4	82	48	12	12	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39039704--39039771	24	2.8	25	83	14	74	66	1	0	32	1.01
39041311--39041336	6	4.3	6	100	0	52	61	0	0	38	0.96
39062574--39062741	41	4.1	41	82	4	187	33	30	21	14	1.93
39072097--39072149	27	2.0	27	92	0	88	39	11	16	32	1.85
39080440--39080472	17	1.9	17	88	11	50	27	18	12	42	1.85
39083514--39083565	27	2.0	25	81	7	59	23	26	0	50	1.50
39083515--39083599	43	2.0	43	90	4	136	22	25	1	50	1.56
39086069--39086099	16	1.9	16	100	0	62	12	6	3	77	1.08
39094377--39094407	16	1.9	16	93	0	53	12	9	3	74	1.19
39098324--39099485	138	8.4	138	90	1	1794	40	8	5	44	1.59
39098847--39099201	71	5.1	70	63	21	208	40	9	4	45	1.57
39099001--39099210	67	3.1	67	63	22	173	40	10	4	44	1.58
39099001--39099232	71	3.3	71	66	20	198	40	9	4	45	1.57
39108851--39108941	19	4.8	19	74	5	76	37	21	18	21	1.94
39109048--39109089	21	2.1	19	83	16	50	30	19	0	50	1.48
39110008--39110056	22	2.2	22	85	7	64	48	10	22	18	1.77
39111494--39111551	25	2.3	25	85	5	73	27	18	22	31	1.97
39111514--39111579	25	2.6	26	83	4	73	27	18	21	33	1.96
39113454--39113557	39	2.7	39	100	0	208	35	11	25	26	1.90
39122377--39122440	23	2.8	23	90	0	101	29	25	29	15	1.96
39123587--39123672	22	3.9	22	79	0	91	34	22	25	17	1.95
39125939--39126059	37	3.4	36	80	7	131	42	14	16	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39129996--39130042	19	2.5	19	92	0	76	17	10	4	68	1.35
39132337--39132376	18	2.2	18	95	0	71	27	17	25	30	1.97
39137743--39137784	21	2.0	21	90	0	66	35	4	38	21	1.75
39138239--39138275	17	2.2	17	90	0	56	24	18	5	51	1.67
39142100--39142224	35	3.6	35	83	2	126	26	13	16	43	1.85
39142172--39142266	35	2.7	35	81	4	102	29	14	15	40	1.88
39142363--39142444	31	2.6	31	78	0	101	19	24	32	23	1.97
39149360--39149388	5	6.0	5	92	8	51	58	0	0	41	0.98
39157975--39158008	11	3.0	11	86	4	50	35	2	8	52	1.47
39158807--39158846	10	4.2	9	87	6	53	57	2	0	40	1.12
39158810--39158846	19	1.9	19	89	10	58	59	2	0	37	1.12
39174992--39175029	19	2.1	19	90	5	60	26	0	5	68	1.11
39182980--39183012	15	2.1	16	88	5	50	66	6	27	0	1.15
39187273--39187351	40	1.9	41	84	5	106	27	7	17	46	1.75
39187900--39187930	14	2.2	14	100	0	62	25	38	6	29	1.81
39190865--39190907	22	2.0	22	86	9	61	25	30	20	23	1.99
39207600--39207697	46	2.1	46	84	3	126	28	26	10	34	1.89
39210455--39210490	9	4.0	9	86	13	56	75	0	25	0	0.81
39210455--39210490	13	2.7	13	86	4	54	75	0	25	0	0.81
39211160--39211208	25	2.0	25	83	0	62	38	0	16	44	1.48
39211603--39211660	25	2.3	25	93	0	98	50	1	24	24	1.59
39215546--39215814	113	2.4	113	79	8	262	28	19	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39216239--39216292	7	7.6	7	79	4	54	9	0	44	46	1.35
39216239--39216295	22	2.7	21	86	2	78	10	0	45	43	1.38
39216276--39216562	137	2.1	137	100	0	574	19	8	31	41	1.81
39216929--39217059	70	1.9	70	96	0	244	51	3	5	40	1.40
39218527--39218574	19	2.7	18	87	9	64	31	4	16	47	1.65
39218660--39218711	26	2.0	26	85	3	70	57	15	9	17	1.64
39218970--39219042	21	3.3	21	67	23	60	30	5	5	58	1.43
39219835--39220248	9	48.4	9	68	17	190	43	18	1	35	1.61
39219837--39220153	25	12.6	25	77	7	216	43	18	2	35	1.62
39219812--39220258	50	9.1	50	70	16	156	43	18	2	36	1.61
39219949--39220026	41	1.9	41	91	0	129	42	14	3	39	1.63
39220030--39220120	43	2.2	41	82	7	103	46	18	1	34	1.57
39219870--39220235	16	22.0	16	68	15	151	45	18	1	35	1.59
39220149--39220243	25	3.8	25	86	5	122	47	17	0	34	1.48
39220050--39220220	92	1.8	93	87	7	258	44	18	1	35	1.60
39222818--39222846	14	2.0	15	93	6	51	6	6	17	68	1.34
39222774--39222852	39	2.0	38	85	9	106	15	11	21	51	1.74
39224233--39224646	9	48.4	9	68	17	190	43	18	1	35	1.61
39224235--39224551	25	12.6	25	77	7	216	43	18	2	35	1.62
39224210--39224656	50	9.1	50	70	16	156	43	18	2	36	1.61
39224347--39224424	41	1.9	41	91	0	129	42	14	3	39	1.63
39224428--39224518	43	2.2	41	82	7	103	46	18	1	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39224268--39224633	16	22.0	16	68	15	151	45	18	1	35	1.59
39224547--39224641	25	3.8	25	86	5	122	47	17	0	34	1.48
39224448--39224618	92	1.8	93	87	7	258	44	18	1	35	1.60
39229431--39229477	21	2.2	21	88	0	67	36	10	44	8	1.70
39229892--39230146	42	6.0	43	78	5	216	27	19	25	27	1.99
39230757--39230835	29	2.8	29	82	5	81	39	17	25	17	1.92
39234610--39234639	6	5.2	6	96	4	53	83	0	16	0	0.65
39235454--39235561	44	2.5	44	80	8	132	24	18	28	28	1.98
39240044--39240231	50	3.6	50	87	4	250	27	21	28	22	1.99
39240092--39240286	50	3.9	50	84	1	239	28	22	29	20	1.98
39240044--39240283	100	2.3	103	80	5	254	28	21	27	22	1.99
39240535--39240573	12	3.2	12	85	0	51	51	5	23	20	1.67
39240536--39240579	20	2.2	20	87	0	61	52	4	25	18	1.64
39246197--39246304	44	2.5	44	81	13	134	25	19	27	27	1.99
39252855--39253119	27	9.9	27	79	8	186	42	18	13	26	1.86
39252856--39253119	54	4.9	54	78	4	239	42	18	12	26	1.86
39252869--39253119	81	3.1	80	78	6	267	43	17	13	26	1.86
39253298--39253353	24	2.3	24	87	6	87	17	7	21	53	1.67
39253441--39253492	27	1.9	27	84	7	70	25	26	17	30	1.97
39253486--39253539	26	2.1	26	82	0	63	16	22	27	33	1.95
39253527--39253611	32	2.7	32	85	5	102	20	21	22	36	1.95
39253596--39253660	22	3.0	21	72	4	58	18	21	16	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39258364--39258459	32	3.0	32	100	0	192	34	21	6	37	1.79
39259154--39259430	27	10.3	27	81	8	262	20	18	19	41	1.90
39259158--39259404	81	3.1	80	83	5	293	20	18	19	42	1.90
39265793--39265861	32	2.2	32	94	0	120	36	20	4	39	1.72
39266102--39266206	30	3.4	30	78	11	106	25	22	24	26	2.00
39266143--39266229	28	3.0	28	81	6	93	28	21	24	25	1.99
39266615--39266781	27	6.2	27	85	6	214	23	19	17	40	1.91
39266615--39266781	81	2.1	81	88	2	246	23	19	17	40	1.91
39271906--39272400	247	2.0	247	92	0	828	22	20	20	36	1.95
39275519--39275586	10	6.8	10	72	12	59	23	29	17	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126