genome.fa.s14.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  12  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3404688--3404714	12	2.2	12	100	0	54	70	0	0	29	0.88
3421206--3421240	18	1.9	18	94	0	61	37	8	5	48	1.58
3444915--3444987	38	1.9	38	83	8	96	36	2	1	58	1.21
3444952--3445004	24	2.2	25	86	3	72	37	0	3	58	1.16
3444984--3445033	20	2.5	21	84	9	61	30	0	6	64	1.18
3447228--3447277	17	2.7	20	78	18	70	10	0	44	46	1.37
3451867--3451916	17	2.7	20	78	18	70	10	0	44	46	1.37
3452888--3452932	19	2.4	18	85	10	63	37	8	0	53	1.32
3452898--3452938	19	2.2	19	100	0	82	36	4	0	58	1.20
3466248--3466277	15	2.1	15	93	6	53	70	0	0	30	0.88
3466305--3466345	21	2.0	21	90	0	64	70	2	0	26	0.99
3466289--3466339	7	7.1	7	80	10	50	70	1	0	27	0.98
3466418--3466474	20	3.0	18	76	16	53	59	3	0	36	1.14
3466754--3466780	13	2.1	13	100	0	54	22	0	0	77	0.76
3469402--3469446	24	1.9	24	90	4	74	60	26	0	13	1.34
3476808--3476854	2	25.0	2	81	12	55	46	0	0	53	1.00
3476808--3476854	11	4.4	11	86	2	60	46	0	0	53	1.00
3476802--3476854	26	2.1	24	89	6	79	45	0	0	54	0.99
3476812--3476853	22	1.9	22	95	0	75	45	0	0	54	0.99
3476802--3476853	9	5.4	10	82	13	56	44	0	0	55	0.99
3476806--3476861	26	2.2	26	83	6	69	42	1	1	53	1.21
3479064--3479142	19	3.8	19	75	16	77	40	6	11	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3479096--3479142	23	2.0	24	87	4	69	42	6	12	38	1.69
3479111--3479153	22	1.9	23	85	4	61	37	4	11	46	1.61
3480301--3480357	24	2.4	23	80	13	62	47	3	0	49	1.18
3485090--3485115	13	2.0	13	100	0	52	38	0	0	61	0.96
3489328--3491216	129	14.6	129	99	0	3751	23	29	23	23	1.99
3501879--3501910	3	10.7	3	100	0	64	68	0	0	31	0.90
3502301--3502591	142	2.1	138	89	5	442	36	17	7	38	1.79
3506324--3506369	17	2.7	17	81	15	51	43	4	2	50	1.34
3511827--3511945	64	1.9	63	87	1	175	22	33	11	31	1.90
3517597--3517664	32	2.3	29	82	10	75	51	1	4	42	1.31
3536191--3536372	89	2.0	89	95	0	328	17	19	21	41	1.91
3547728--3547800	38	1.9	38	94	0	128	39	9	5	45	1.60
3551999--3552061	20	3.0	21	80	8	76	57	9	1	31	1.40
3552717--3552835	37	3.2	37	86	9	163	26	21	15	35	1.94
3552785--3553001	52	4.2	52	84	8	293	27	23	14	35	1.93
3552835--3553007	46	3.7	46	84	9	231	28	22	14	34	1.93
3552784--3553007	98	2.3	98	94	0	394	28	23	14	34	1.93
3555096--3555145	22	2.2	23	79	13	59	60	0	16	24	1.36
3557192--3557229	14	2.4	16	83	16	53	42	21	0	36	1.53
3558477--3558501	12	2.1	12	100	0	50	16	16	0	68	1.22
3559250--3559289	19	2.1	19	85	0	53	25	10	35	30	1.88
3559914--3559948	18	1.9	18	94	0	61	60	5	0	34	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3559918--3559949	16	2.0	16	93	0	55	59	6	0	34	1.23
3569045--3569085	21	1.9	22	85	5	57	63	9	9	17	1.51
3570536--3570605	15	4.7	14	72	18	52	45	2	8	42	1.49
3576327--3576371	23	2.0	21	84	16	56	17	0	8	73	1.08
3576877--3576921	22	2.0	23	83	12	58	17	11	4	66	1.38
3579906--3579977	34	2.1	34	92	0	117	38	23	18	19	1.93
3580441--3580519	27	3.0	27	85	9	117	16	16	22	44	1.86
3581727--3581767	21	2.0	21	95	0	73	19	31	9	39	1.84
3593870--3594037	27	6.3	27	80	8	166	17	20	19	42	1.90
3596347--3596433	28	3.1	28	82	8	115	28	19	25	26	1.99
3596817--3596886	27	2.6	27	82	13	90	18	17	22	41	1.90
3600644--3600677	18	1.9	18	88	5	52	32	0	5	61	1.20
3608153--3608180	9	3.1	9	100	0	56	25	10	21	42	1.85
3611733--3611772	21	2.0	21	90	5	64	17	0	2	80	0.83
3611734--3611787	21	2.6	20	82	8	63	18	3	1	75	1.03
3611833--3611902	31	2.3	31	80	9	83	17	7	1	74	1.11
3611852--3611891	19	2.1	20	86	9	57	15	12	0	72	1.12
3614144--3614168	13	1.9	13	100	0	50	40	12	0	48	1.40
3617819--3617845	14	1.9	14	100	0	54	29	7	25	37	1.83
3626339--3626429	45	2.0	45	100	0	182	41	20	19	17	1.90
3626604--3626636	16	2.0	17	94	5	59	45	0	0	54	0.99
3626620--3626683	11	5.6	11	81	7	74	43	3	0	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3626623--3626684	12	5.2	12	75	11	56	46	3	0	50	1.17
3627384--3627470	21	4.0	21	80	8	86	55	3	8	33	1.46
3630837--3630952	43	2.7	44	81	10	141	25	17	27	30	1.97
3630851--3630955	43	2.4	43	90	0	156	21	17	30	30	1.96
3633371--3633414	18	2.3	20	85	14	58	18	0	4	77	0.94
3635113--3635149	10	3.6	10	88	3	56	70	0	29	0	0.88
3639586--3639628	21	2.0	21	90	0	68	39	4	2	53	1.34
3639606--3640080	157	3.0	153	75	14	520	31	10	7	50	1.64
3645474--3645521	17	2.8	17	81	6	53	72	2	0	25	0.95
3646715--3647123	127	3.3	125	86	3	520	30	16	22	31	1.95
3646715--3647134	124	3.4	123	84	5	522	30	15	22	31	1.95
3648178--3648277	51	2.0	51	84	4	130	45	4	25	26	1.71
3648255--3648301	11	4.2	11	88	2	67	42	4	34	19	1.70
3651033--3651077	22	2.0	24	91	8	76	24	22	0	53	1.46
3652403--3652459	25	2.4	23	82	8	71	49	0	3	47	1.18
3655830--3655861	4	8.0	4	100	0	64	25	0	25	50	1.50
3658255--3658404	56	2.8	56	83	6	202	22	28	22	26	1.99
3663014--3663132	64	1.9	63	87	1	175	22	34	10	31	1.89
3663546--3663584	7	5.7	7	87	3	53	17	0	35	46	1.49
3663526--3663577	14	3.8	14	71	5	52	21	0	32	46	1.52
3664168--3664224	16	3.6	16	95	0	87	29	0	36	33	1.58
3664470--3664504	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3664429--3664672	79	3.1	79	65	17	220	47	3	2	46	1.33
3664604--3664645	15	2.7	16	82	14	52	52	2	0	45	1.13
3664357--3664670	154	2.0	156	96	1	578	44	3	5	47	1.41
3664613--3664654	15	2.9	15	82	10	52	52	0	0	47	1.00
3664607--3665031	120	3.5	120	99	0	841	50	5	1	42	1.34
3664723--3664774	15	3.6	15	80	12	56	53	1	0	44	1.11
3664843--3664894	15	3.6	15	80	12	56	53	1	0	44	1.11
3664963--3665014	15	3.6	15	80	12	56	53	1	0	44	1.11
3664967--3665342	157	2.4	157	98	0	734	46	3	3	46	1.37
3665141--3665175	18	2.0	17	88	5	52	54	0	0	45	0.99
3665278--3665319	15	2.7	16	82	14	52	52	2	0	45	1.13
3665287--3665328	15	2.9	15	82	10	52	52	0	0	47	1.00
3665397--3665448	15	3.6	15	80	12	56	53	1	0	44	1.11
3665538--3665572	18	2.0	17	88	5	52	54	0	0	45	0.99
3665637--3665688	15	3.6	15	80	12	56	53	1	0	44	1.11
3665753--3665799	16	3.0	16	78	12	53	51	2	0	46	1.13
3665898--3665932	18	2.0	17	88	5	52	54	0	0	45	0.99
3665997--3666048	15	3.6	15	80	12	56	53	1	0	44	1.11
3666117--3666168	15	3.6	15	80	12	56	53	1	0	44	1.11
3666237--3666288	15	3.6	15	80	12	56	53	1	0	44	1.11
3666357--3666408	15	3.6	15	80	12	56	53	1	0	44	1.11
3666477--3666528	15	3.6	15	80	12	56	53	1	0	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3666597--3666648	15	3.6	15	80	12	56	53	1	0	44	1.11
3665281--3666773	120	12.4	120	98	0	2862	49	5	1	42	1.37
3666821--3666964	47	3.1	46	64	25	106	50	4	2	43	1.33
3666714--3666996	91	3.0	93	81	10	299	48	3	3	44	1.34
3666770--3666956	44	4.1	43	69	17	112	48	3	2	45	1.32
3666839--3666977	47	3.0	47	68	17	137	49	4	2	43	1.34
3670445--3670469	9	2.8	9	100	0	50	24	12	0	64	1.27
3677204--3677256	18	2.9	18	80	2	61	41	45	1	11	1.51
3685254--3685427	89	2.0	89	97	0	330	17	20	21	40	1.91
3692484--3692570	36	2.4	36	90	0	129	26	16	28	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126