genome.fa.s14.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  6  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1535576--1535609	17	2.0	17	88	0	50	50	5	2	41	1.42
1535622--1536126	17	28.5	18	72	12	334	47	8	11	32	1.71
1535585--1535651	36	1.9	34	84	6	89	46	7	5	40	1.57
1535622--1536127	35	14.3	34	72	11	297	47	9	11	32	1.71
1535621--1535759	18	7.8	18	75	10	79	44	11	12	31	1.77
1536063--1536104	19	2.2	19	86	4	57	33	9	11	45	1.73
1535938--1536127	55	3.5	51	73	14	143	46	7	12	33	1.69
1536134--1536383	133	1.9	133	84	5	335	30	14	16	39	1.88
1536593--1536634	11	4.0	10	87	9	57	0	16	0	83	0.65
1536593--1536634	21	2.0	21	86	9	59	0	16	0	83	0.65
1536602--1536645	14	3.3	13	87	12	54	0	18	0	81	0.68
1536593--1536645	11	4.6	11	80	19	56	0	18	0	81	0.70
1536902--1536949	10	4.7	10	80	14	62	0	18	0	81	0.70
1536902--1536953	23	2.4	23	84	12	67	0	19	0	80	0.71
1536902--1536959	21	2.8	21	82	14	68	0	20	0	79	0.74
1536912--1536958	17	2.8	16	81	9	58	0	21	0	78	0.75
1537302--1537366	29	2.2	30	81	10	80	40	6	18	35	1.76
1538181--1538457	97	2.8	97	90	2	412	20	31	19	27	1.97
1538181--1538462	50	5.8	49	80	12	296	21	31	19	27	1.97
1540614--1540662	3	16.3	3	100	0	98	32	0	0	67	0.91
1555176--1555235	30	2.0	30	90	0	93	40	8	13	38	1.75
1555514--1555545	14	2.3	14	94	0	55	0	15	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1557685--1557732	24	2.0	24	87	0	69	50	8	18	22	1.74
1563168--1563218	26	2.0	25	84	3	66	27	15	21	35	1.94
1564316--1564348	15	2.1	16	94	5	59	60	0	6	33	1.21
1567201--1567230	11	2.7	11	100	0	60	26	40	0	33	1.57
1574532--1574567	12	2.7	14	83	16	58	77	0	0	22	0.76
1581072--1581174	40	2.5	42	78	12	131	69	4	7	17	1.30
1581797--1581849	26	2.0	26	82	13	65	18	7	15	58	1.60
1592784--1592851	35	1.9	35	88	5	102	39	16	2	41	1.63
1594415--1594466	24	2.2	24	85	0	68	53	9	3	32	1.51
1595888--1596121	109	2.1	109	100	0	468	38	17	15	28	1.90
1596470--1596536	35	1.9	35	82	11	84	50	2	10	35	1.52
1596962--1597017	3	18.3	3	78	10	60	58	0	5	35	1.21
1596963--1597017	24	2.4	22	88	8	83	60	0	5	34	1.20
1597616--1597655	5	7.8	5	83	5	53	80	0	7	12	0.91
1597616--1597655	10	3.9	10	96	3	71	80	0	7	12	0.91
1602413--1602480	35	1.9	35	91	5	111	39	14	2	42	1.61
1602413--1602470	20	3.2	19	68	31	54	39	15	1	43	1.57
1609631--1609675	23	2.0	23	82	8	56	28	6	2	62	1.33
1609670--1609710	21	2.0	21	85	9	57	46	0	7	46	1.30
1621399--1621457	32	1.9	30	82	6	73	62	1	0	35	1.05
1626047--1626126	20	4.1	19	72	16	65	38	1	0	60	1.05
1626047--1626123	40	1.9	40	86	5	111	38	1	0	59	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1629929--1629984	15	3.6	15	76	13	51	32	1	0	66	1.03
1632833--1632873	2	20.5	2	89	0	64	2	2	46	48	1.28
1632831--1632877	10	4.5	10	84	10	58	6	2	42	48	1.40
1636273--1636343	23	3.3	21	74	14	56	35	7	15	42	1.74
1636285--1636343	23	2.6	23	79	10	59	33	6	18	40	1.77
1637554--1637586	17	1.9	17	93	0	57	60	12	0	27	1.32
1640636--1640685	26	1.9	25	84	15	66	56	2	2	40	1.22
1640662--1640711	17	3.2	17	70	21	54	56	0	2	42	1.11
1640655--1640719	30	2.2	31	86	10	91	50	1	1	46	1.20
1642492--1642546	27	2.0	27	86	6	76	65	3	0	30	1.10
1642808--1642849	14	3.0	14	89	6	59	21	2	0	76	0.90
1642817--1642849	7	4.7	7	92	0	57	24	0	0	75	0.80
1642857--1642911	27	2.1	27	89	3	85	30	0	1	67	1.01
1642861--1642918	27	2.2	27	84	3	73	39	0	1	58	1.08
1649775--1649970	98	2.0	98	100	0	392	34	13	22	29	1.92
1652421--1652481	31	2.0	31	90	6	97	34	9	11	44	1.74
1653100--1653165	26	2.8	22	75	16	69	34	27	12	25	1.91
1653540--1653616	30	2.6	30	91	0	118	32	37	18	11	1.87
1660304--1660340	2	18.5	2	100	0	74	51	0	48	0	1.00
1668407--1668448	12	3.2	13	93	6	68	83	14	0	2	0.75
1668407--1668454	13	3.8	12	89	8	69	81	14	0	4	0.84
1668464--1668499	13	2.8	13	86	0	54	77	0	22	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1670068--1670092	13	1.9	13	100	0	50	16	12	0	72	1.13
1670944--1671375	88	4.9	88	91	0	688	26	22	24	26	2.00
1670991--1671304	44	7.1	44	64	18	170	25	22	24	27	2.00
1671122--1671348	44	5.2	44	63	16	137	26	25	22	25	2.00
1671870--1671911	12	3.2	13	93	6	68	83	14	0	2	0.75
1671870--1671917	13	3.8	12	89	8	69	81	14	0	4	0.84
1671927--1671962	13	2.8	13	86	0	54	77	0	22	0	0.76
1673531--1673555	13	1.9	13	100	0	50	16	12	0	72	1.13
1674407--1675045	88	7.3	88	86	2	802	28	22	24	25	1.99
1674497--1674723	44	5.2	44	64	16	128	25	22	24	26	2.00
1675056--1675141	44	2.0	44	90	0	136	29	17	25	27	1.97
1675071--1675344	133	2.1	132	83	6	349	28	18	22	30	1.97
1677029--1677058	13	2.3	13	94	0	51	26	0	3	70	1.03
1678532--1678605	29	2.5	30	86	4	96	52	16	12	18	1.74
1679612--1679869	141	1.8	140	85	6	369	31	21	18	27	1.97
1681370--1681400	10	3.1	10	100	0	62	90	9	0	0	0.46
1691076--1691110	17	2.1	17	89	5	54	51	0	5	42	1.25
1694169--1694197	9	3.3	9	95	4	51	20	0	10	68	1.18
1694958--1695016	30	2.0	30	89	0	91	25	5	13	55	1.58
1695752--1695784	3	11.0	3	100	0	66	66	0	0	33	0.92
1697873--1697926	28	1.9	28	85	7	74	57	3	7	31	1.44
1702292--1702323	14	2.3	14	94	0	55	37	21	9	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1702385--1702446	20	2.9	21	75	20	65	59	8	3	29	1.42
1715163--1715207	22	2.0	22	86	0	63	20	6	8	64	1.44
1715942--1715967	12	2.2	12	100	0	52	38	7	26	26	1.83
1717417--1717467	20	2.5	20	81	6	59	64	1	0	33	1.05
1717427--1717501	30	2.5	30	84	0	96	60	0	2	37	1.11
1717651--1717690	20	2.0	21	90	9	66	20	0	0	80	0.72
1717651--1717690	11	4.0	10	87	12	64	20	0	0	80	0.72
1719602--1719661	31	1.9	32	90	10	97	46	18	8	26	1.77
1721511--1721577	34	1.9	35	87	3	100	31	8	14	44	1.76
1725919--1726519	301	2.0	301	97	0	1139	38	21	9	30	1.86
1727462--1727505	23	1.9	22	82	17	54	36	25	0	38	1.56
1727550--1727643	45	2.1	45	91	0	152	30	23	19	26	1.98
1727649--1727835	51	3.7	50	77	5	189	31	24	17	27	1.97
1727647--1727831	101	1.8	102	84	5	259	31	23	17	27	1.97
1729273--1729305	16	2.1	16	88	5	50	9	18	0	72	1.10
1734115--1734147	5	6.6	5	100	0	66	81	0	0	18	0.68
1742096--1742127	16	2.0	16	93	0	55	65	3	0	31	1.08
1747894--1747960	21	3.2	21	74	18	59	52	2	1	43	1.25
1752021--1752341	166	1.9	166	91	0	525	23	16	17	42	1.89
1755185--1755224	20	2.0	20	85	9	55	62	7	0	30	1.23
1758211--1758418	46	4.6	46	92	1	332	34	14	21	29	1.93
1760802--1760844	3	14.3	3	90	0	68	32	2	2	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1768162--1768234	26	3.1	22	83	15	76	72	8	1	17	1.16
1768189--1768249	25	2.4	26	91	2	97	63	8	0	27	1.22
1768193--1768260	25	2.7	25	81	6	75	67	7	0	25	1.16
1769634--1769957	166	2.0	166	91	1	524	24	15	18	41	1.89
1775102--1775146	23	2.0	23	82	8	56	53	0	2	44	1.13
1777721--1777763	21	2.0	21	81	0	50	34	4	16	44	1.68
1783952--1783980	14	2.1	14	100	0	58	51	6	6	34	1.55
1784670--1784741	18	4.0	17	72	20	58	26	8	19	45	1.78
1790535--1790606	18	4.0	17	72	20	58	27	8	18	45	1.77
1795238--1795323	35	2.3	37	84	13	106	25	2	1	70	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126