genome.fa.s14.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  2  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287636--287688	26	2.0	26	96	0	97	39	20	7	32	1.81
288468--288501	14	2.4	14	100	0	68	35	14	5	44	1.70
289311--289385	33	2.3	33	85	0	96	18	48	8	25	1.75
289650--290822	48	24.3	48	96	1	2062	46	13	9	31	1.73
295347--295375	11	2.7	11	94	5	51	17	10	10	62	1.54
295577--295629	27	2.0	25	85	10	70	33	3	13	49	1.60
299405--299461	26	2.2	26	100	0	114	29	22	21	26	1.99
305958--306010	1	53.0	1	96	0	88	96	3	0	0	0.23
307366--307431	30	2.2	31	81	8	73	27	1	9	62	1.34
322826--322858	16	2.1	16	100	0	66	36	6	36	21	1.78
323092--323126	18	2.0	17	88	5	52	54	0	0	45	0.99
323084--323243	56	2.7	59	69	9	139	49	3	3	43	1.36
323285--323400	26	4.5	26	68	18	80	50	1	0	47	1.17
323285--323423	44	3.4	43	66	19	116	49	2	1	46	1.22
323264--323421	78	2.0	78	95	0	280	48	2	2	46	1.29
324992--325054	23	2.7	24	79	16	87	52	22	7	17	1.70
325021--325066	22	2.1	22	84	8	58	58	19	4	17	1.55
324964--325193	107	2.1	107	97	0	433	44	23	6	25	1.76
325099--325173	23	3.3	24	73	21	72	56	20	5	18	1.61
335840--335901	28	2.2	27	80	11	72	61	0	3	35	1.12
337135--337177	11	3.9	11	82	8	52	4	11	4	79	1.04
338002--339100	87	12.7	87	91	1	1658	24	22	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338047--339081	341	3.0	342	90	2	1626	24	22	22	30	1.99
340292--340352	7	9.0	7	89	7	99	14	16	0	68	1.21
340292--340352	13	4.5	14	87	8	99	14	16	0	68	1.21
340295--340352	20	2.9	20	97	0	107	13	15	0	70	1.17
340292--340352	27	2.3	27	91	5	97	14	16	0	68	1.21
341954--342032	35	2.3	35	93	0	131	44	3	13	37	1.63
342013--342046	15	2.4	14	90	5	50	55	2	14	26	1.53
354435--354478	16	2.7	17	77	22	58	38	11	22	27	1.88
355883--355937	26	2.1	26	86	6	76	49	0	1	49	1.11
355897--355935	21	1.9	20	89	5	60	48	0	0	51	1.00
355891--355971	28	3.0	28	82	8	96	44	0	3	51	1.19
355891--355967	17	4.4	17	74	16	61	44	0	2	53	1.14
358256--358896	68	9.4	68	71	8	381	32	22	12	32	1.91
358202--358877	136	5.0	135	78	5	601	32	22	11	33	1.90
358311--358877	204	2.8	204	80	2	611	32	22	12	33	1.91
358643--358893	34	7.4	33	68	16	122	33	20	13	32	1.92
363914--363956	19	2.3	19	95	0	77	9	55	13	20	1.66
368515--368553	19	2.1	19	85	9	53	46	0	2	51	1.14
374835--374876	21	2.0	21	85	0	57	26	19	26	28	1.98
377059--377128	34	2.1	34	88	0	104	35	15	12	35	1.86
382192--382269	27	2.9	27	92	0	129	21	26	26	24	1.99
382358--382421	4	15.5	4	78	18	69	71	0	26	1	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382354--382421	22	3.0	22	91	4	109	69	0	29	1	0.98
382365--382422	14	4.1	14	75	16	57	72	0	25	1	0.94
382623--382649	11	2.5	11	100	0	54	25	0	7	66	1.17
386382--386520	48	2.9	48	89	2	172	31	12	10	46	1.74
386495--386546	26	2.0	26	92	0	86	25	17	9	48	1.77
386447--386594	74	2.0	74	88	2	217	29	13	10	46	1.76
386864--386944	33	2.5	33	91	0	126	24	9	49	16	1.75
387075--387114	12	3.3	12	85	0	53	7	32	35	25	1.84
388752--388776	12	2.1	12	100	0	50	48	8	0	44	1.32
389700--389788	31	2.8	31	81	6	90	33	30	0	35	1.58
390696--390852	73	2.2	73	97	0	296	46	4	6	42	1.49
393595--393713	46	2.6	46	81	5	143	31	15	24	27	1.96
394183--394244	32	2.0	31	87	9	90	22	0	20	56	1.42
397640--397668	15	1.9	15	100	0	58	31	27	27	13	1.94
398918--398987	26	2.7	26	93	0	113	24	22	27	25	2.00
401747--401818	26	2.8	26	87	6	94	22	20	20	36	1.96
401923--402007	28	2.8	31	77	12	86	25	21	23	29	1.99
417750--417836	43	2.0	43	97	0	165	37	21	9	31	1.85
422050--422090	21	2.0	21	85	4	57	24	2	9	63	1.37
422469--422501	15	2.2	15	94	0	57	15	12	9	63	1.51
423664--423747	34	2.5	32	79	12	89	23	16	27	32	1.96
432155--432220	34	1.9	34	90	0	105	72	9	10	7	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432152--432241	40	2.3	39	81	9	103	72	7	11	8	1.29
432154--432258	46	2.2	49	81	6	126	72	6	13	7	1.27
433069--433127	14	4.1	14	80	10	66	74	1	13	10	1.14
434438--434822	44	8.3	44	69	18	235	33	17	20	28	1.95
434445--434866	142	3.0	142	95	0	745	33	17	20	28	1.95
434729--434847	44	2.7	44	82	2	114	31	17	21	29	1.96
434950--435531	50	11.6	49	71	7	364	33	23	19	23	1.97
434928--435551	100	6.2	100	88	1	892	32	23	20	22	1.98
436906--436962	6	9.2	6	81	7	60	14	5	5	75	1.15
436987--437011	3	8.3	3	100	0	50	32	0	0	68	0.90
437056--437115	23	2.7	23	72	12	61	40	5	1	53	1.33
444590--444619	14	2.2	13	94	5	51	80	3	16	0	0.85
448451--448675	50	4.5	50	68	17	144	43	9	3	44	1.53
448394--448675	149	1.9	148	88	5	426	43	9	4	42	1.58
449521--449783	42	6.3	42	87	0	373	37	22	19	20	1.94
461034--461083	20	2.3	20	80	10	55	56	12	6	26	1.58
484519--484557	20	1.9	21	84	5	53	30	28	2	38	1.70
486608--486830	40	5.6	40	86	3	236	24	21	27	26	1.99
486683--486865	79	2.3	80	82	1	226	25	20	27	25	1.99
492476--492678	43	4.8	43	83	6	270	23	27	18	31	1.97
492476--492678	84	2.4	85	85	6	277	23	27	18	31	1.97
498593--499234	9	75.2	9	68	19	281	29	1	18	50	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498593--498847	16	15.4	17	77	16	227	32	1	20	46	1.58
498593--498942	25	14.0	25	79	11	250	31	1	19	48	1.56
498593--499364	50	15.3	50	67	19	266	29	1	18	51	1.54
498830--499293	96	4.8	96	99	0	903	27	1	17	54	1.50
499379--499432	15	3.1	18	74	17	60	57	1	0	40	1.09
499462--499502	18	2.3	18	88	12	59	41	2	12	43	1.55
500464--500526	33	2.0	31	81	9	74	57	22	1	19	1.49
502164--502209	22	2.1	22	88	8	67	34	36	2	26	1.69
502549--502581	14	2.4	14	90	10	50	57	21	0	21	1.41
502610--502640	7	4.4	7	95	0	53	67	16	0	16	1.23
502997--503654	208	3.2	208	87	0	938	29	21	18	30	1.97
508036--508070	17	2.1	17	94	0	61	25	11	8	54	1.64
519628--519696	29	2.5	26	79	9	66	24	15	2	56	1.53
526491--526530	18	2.1	18	86	9	53	55	0	25	20	1.44
530203--530287	42	2.0	42	95	0	152	51	8	12	27	1.68
538465--538660	50	3.9	50	83	0	230	28	22	28	20	1.99
538465--538646	100	1.8	100	85	0	256	28	23	29	19	1.98
558863--558900	20	1.9	20	89	10	60	60	5	0	34	1.19
563782--563959	27	6.6	27	83	3	205	26	15	28	29	1.96
563783--563938	82	1.9	81	88	3	233	26	15	28	29	1.96
563779--563959	82	2.2	81	83	2	229	27	15	27	29	1.96
563864--563970	27	3.9	27	85	1	70	26	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571747--571898	27	5.6	27	90	2	223	26	14	28	30	1.95
571747--571898	55	2.8	55	89	2	234	26	14	28	30	1.95
571747--571898	82	1.9	82	91	0	250	26	14	28	30	1.95
579936--579973	17	2.2	18	90	4	60	84	0	13	2	0.73
583271--583314	5	8.8	5	81	18	56	20	0	2	77	0.88
583271--583314	14	3.0	14	81	18	54	20	0	2	77	0.88
584898--585018	54	2.2	54	94	0	206	28	23	23	24	2.00
590893--590963	31	2.3	31	85	0	88	32	2	15	49	1.59
590918--590984	31	2.2	31	94	0	116	28	0	17	53	1.44
598054--598106	19	2.7	19	79	2	61	64	3	3	28	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126