genome.fa.s14.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  33  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9497478--9497692	107	2.0	108	81	0	252	40	22	17	19	1.91
9503195--9503247	26	2.0	26	88	3	79	30	13	28	28	1.94
9505410--9505465	22	2.5	22	88	0	76	26	19	32	21	1.97
9518929--9518972	19	2.3	19	84	7	54	50	6	18	25	1.71
9520075--9520235	40	4.0	40	84	3	216	35	14	29	20	1.92
9520984--9521026	22	2.0	21	86	4	59	23	6	2	67	1.27
9523365--9523389	5	5.0	5	100	0	50	40	0	20	40	1.52
9524529--9524624	20	4.8	20	75	10	88	12	28	20	38	1.89
9524530--9524650	60	2.0	62	82	9	151	14	28	19	38	1.91
9525572--9525625	20	2.7	20	88	2	72	44	16	9	29	1.79
9528309--9528540	43	5.5	41	74	9	200	22	17	25	34	1.96
9528309--9528548	85	2.8	84	87	3	311	22	18	25	33	1.97
9535695--9535761	14	4.8	13	76	21	57	74	2	1	20	1.03
9540928--9541068	40	3.5	40	87	2	194	43	18	21	15	1.87
9541153--9541196	21	2.1	21	87	8	63	34	34	0	31	1.58
9551841--9551884	22	2.0	22	82	8	54	27	2	11	59	1.44
9553310--9553351	21	2.0	21	81	9	50	19	14	2	64	1.39
9557814--9557883	9	8.0	9	82	9	74	47	18	0	34	1.49
9557972--9557996	10	2.5	10	100	0	50	48	8	0	44	1.32
9559408--9559586	43	4.2	43	83	0	223	22	16	31	30	1.95
9560971--9561004	17	1.9	18	88	5	52	8	5	32	52	1.56
9561612--9561650	21	1.9	19	85	10	51	71	2	2	23	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9561936--9561974	20	2.0	20	85	10	53	61	0	0	38	0.96
9565915--9565996	33	2.6	31	76	14	87	35	4	3	56	1.39
9566078--9566104	13	2.1	13	100	0	54	66	0	0	33	0.92
9567269--9567307	18	2.0	20	90	9	64	15	0	7	76	0.99
9571657--9571683	11	2.5	11	100	0	54	33	0	11	55	1.35
9571509--9571903	159	2.5	159	98	0	763	38	13	10	38	1.78
9571816--9571842	11	2.5	11	100	0	54	33	0	11	55	1.35
9574085--9574152	11	5.9	11	69	27	52	75	2	4	17	1.10
9574087--9574151	17	3.7	18	69	22	50	73	3	4	18	1.13
9574718--9574784	20	3.3	20	91	0	107	17	44	17	19	1.87
9579114--9579173	30	2.0	30	86	0	84	13	26	36	23	1.92
9583573--9583612	19	2.1	19	100	0	80	22	17	5	55	1.61
9585604--9585669	23	3.0	22	82	10	73	33	3	0	63	1.10
9587342--9587470	62	2.1	62	82	0	150	23	28	24	23	1.99
9588069--9588124	28	1.9	30	89	7	89	78	1	16	3	0.97
9589141--9589180	18	2.2	19	86	13	57	50	7	0	42	1.30
9591990--9592187	51	3.9	51	78	6	222	24	15	28	31	1.95
9594361--9594434	31	2.3	32	77	13	82	67	10	1	20	1.28
9603768--9603842	31	2.3	32	77	11	82	68	10	1	20	1.27
9604052--9604095	18	2.5	17	81	7	52	9	52	2	36	1.46
9606670--9606961	50	5.7	50	81	3	291	27	21	28	23	1.99
9608685--9608720	16	2.2	17	95	5	65	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9610012--9610058	10	4.6	10	77	12	51	27	0	4	68	1.08
9611363--9611406	3	14.7	3	80	0	52	25	0	2	72	0.96
9617329--9617387	25	2.3	26	82	8	77	33	16	23	25	1.96
9619127--9619287	54	3.0	54	82	1	180	35	11	27	24	1.91
9620918--9620952	12	2.7	13	91	8	54	37	8	17	37	1.80
9628506--9628545	19	2.1	19	86	9	55	37	0	0	62	0.95
9628505--9628548	20	2.3	19	80	11	54	38	0	0	61	0.96
9650923--9651084	73	2.2	73	88	2	245	28	17	19	34	1.95
9662196--9662237	20	2.2	19	83	8	57	61	2	11	23	1.42
9667993--9668082	40	2.2	40	80	0	108	34	24	26	14	1.94
9668101--9668209	20	5.4	20	66	8	60	33	18	31	17	1.94
9668098--9668220	40	3.1	40	89	2	185	33	17	30	18	1.95
9667994--9668190	108	1.8	108	80	0	241	33	19	28	18	1.96
9671169--9671211	21	2.0	21	86	13	61	37	23	0	39	1.55
9725120--9725161	20	2.0	22	86	9	61	40	4	0	54	1.21
9725528--9725655	66	1.9	66	90	1	202	21	24	7	47	1.75
9732347--9732473	66	1.9	66	90	3	202	23	21	33	21	1.97
9732413--9732631	50	4.4	50	84	0	258	25	21	31	21	1.98
9739927--9740269	50	6.8	50	86	3	447	25	21	31	21	1.98
9744483--9744508	6	4.3	6	100	0	52	0	19	0	80	0.71
9748702--9748732	14	2.2	14	94	0	53	61	12	6	19	1.53
9748742--9748788	23	2.0	25	83	8	62	74	6	10	8	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9748772--9748828	19	2.9	19	94	2	96	73	15	1	8	1.16
9752168--9752226	30	1.9	32	83	13	79	69	1	25	3	1.13
9752160--9752287	24	5.2	24	70	17	68	68	0	25	4	1.14
9752221--9752280	26	2.3	26	81	16	72	68	0	26	5	1.10
9760215--9760278	18	3.7	18	68	16	62	48	10	1	39	1.48
9770840--9770891	25	2.0	25	85	3	68	61	7	11	19	1.53
9770907--9770958	5	10.4	5	100	0	104	42	38	0	19	1.51
9777114--9777154	19	2.2	19	95	0	73	51	17	12	19	1.76
9779022--9779055	13	2.6	13	100	0	68	41	14	23	20	1.89
9783309--9783392	21	4.0	20	67	13	60	46	19	20	14	1.84
9783324--9783432	41	2.5	42	86	5	139	49	17	19	13	1.79
9785323--9785352	2	15.0	2	100	0	60	50	50	0	0	1.00
9789159--9789668	253	2.0	253	96	0	948	27	15	20	36	1.93
9792652--9792731	30	2.6	29	76	9	88	38	16	8	36	1.79
9792649--9792768	32	3.8	31	71	11	93	40	15	10	34	1.81
9798808--9798843	17	2.1	18	89	5	56	66	11	2	19	1.35
9799586--9799620	3	11.7	3	87	0	52	62	2	2	31	1.24
9800960--9801060	51	2.0	51	84	0	130	31	22	13	31	1.93
9801072--9801216	51	2.8	51	82	0	173	26	24	18	29	1.98
9801221--9801318	51	1.9	51	89	0	151	28	23	18	29	1.98
9801094--9801466	123	3.0	121	78	9	376	26	25	16	31	1.97
9801255--9801403	79	1.9	79	88	0	226	24	25	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9801335--9801749	46	8.6	47	76	9	275	27	22	17	32	1.96
9801335--9801926	97	6.1	97	86	1	774	28	22	17	31	1.96
9801335--9801926	291	2.0	291	87	0	862	28	22	17	31	1.96
9802237--9802294	24	2.4	24	88	0	89	32	24	8	34	1.86
9807651--9807720	34	2.1	34	97	0	131	25	20	20	34	1.96
9820476--9820550	25	2.6	28	80	20	93	58	1	25	14	1.44
9820482--9820543	25	2.4	25	97	2	115	54	0	27	17	1.43
9823439--9823467	15	1.9	15	100	0	58	62	6	6	24	1.45
9831677--9831842	82	2.0	82	96	0	305	47	13	5	33	1.66
9835926--9835980	23	2.4	23	78	0	65	32	1	3	61	1.24
9845088--9845122	18	2.0	17	88	5	52	45	0	0	54	0.99
9845125--9845337	66	3.4	62	67	20	174	41	3	6	48	1.44
9845212--9845263	15	3.6	15	80	12	56	44	0	1	53	1.11
9845034--9845379	120	2.9	120	96	1	615	42	2	5	49	1.39
9845341--9845382	15	2.7	16	82	14	52	45	0	2	52	1.13
9845332--9845373	15	2.9	15	82	10	52	47	0	0	52	1.00
9845316--9845628	153	2.0	156	91	4	510	46	5	4	43	1.45
9845751--9845786	16	2.2	16	95	0	63	38	33	0	27	1.57
9846847--9846990	71	2.0	71	98	0	279	30	23	13	32	1.93
9863495--9863546	24	2.2	24	89	0	77	55	9	1	32	1.43
9865465--9865516	24	2.2	24	89	0	77	55	9	1	32	1.43
9867654--9867729	6	13.0	6	81	13	88	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9867656--9867729	19	4.7	15	77	22	64	54	0	0	45	1.00
9869082--9869115	15	2.4	14	85	9	50	73	0	0	26	0.83
9873377--9873428	22	2.3	23	84	15	74	9	0	23	67	1.20
9883927--9883975	19	2.5	20	80	6	64	18	12	8	61	1.55
9885384--9885438	16	3.5	15	75	22	51	38	7	0	54	1.28
9885843--9886077	110	2.1	110	98	0	452	28	11	17	42	1.83
9897244--9897439	45	4.4	45	80	1	223	28	19	24	28	1.98
9897338--9898233	44	20.5	44	79	4	871	32	12	21	33	1.91
9897626--9897697	36	2.0	36	88	0	108	38	11	18	31	1.85
9897927--9898093	45	3.7	45	77	6	196	28	13	25	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126