genome.fa.s14.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  62  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18053012--18053186	46	3.8	46	76	13	187	29	29	20	21	1.98
18053019--18053190	93	1.8	93	92	0	290	29	29	20	21	1.98
18053061--18053199	47	3.0	46	69	19	110	30	28	17	23	1.97
18054179--18054381	102	2.0	102	99	0	397	33	21	7	37	1.81
18056439--18056482	23	1.9	23	90	0	70	15	47	20	15	1.82
18061712--18061762	19	2.7	19	100	0	102	11	45	27	15	1.81
18063529--18063842	50	6.6	48	75	12	172	24	30	17	27	1.97
18063627--18063802	45	4.0	41	72	17	138	23	30	15	30	1.95
18085148--18085205	29	2.0	29	96	0	107	17	15	22	44	1.86
18088506--18088580	38	2.0	38	91	0	123	21	22	26	29	1.99
18100194--18100457	40	6.7	40	89	5	360	25	27	21	25	1.99
18102059--18102169	43	2.6	43	91	0	177	13	23	34	28	1.93
18121049--18121169	49	2.5	47	80	11	131	29	25	17	27	1.97
18127477--18127686	40	5.3	39	87	5	233	24	21	28	25	1.99
18127424--18127686	120	2.2	120	81	4	300	25	21	27	25	1.99
18127477--18127721	80	3.1	80	81	3	228	25	21	28	24	1.99
18135427--18135636	40	5.3	39	87	5	233	24	21	28	25	1.99
18135374--18135636	120	2.2	120	81	4	300	25	21	27	25	1.99
18135427--18135671	80	3.1	80	81	3	228	25	21	28	24	1.99
18137647--18137688	17	2.5	17	76	7	50	7	11	7	73	1.23
18139625--18139744	60	2.0	60	98	0	231	35	6	24	34	1.82
18158420--18158448	11	2.7	11	94	5	51	41	10	0	48	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18162619--18162660	21	2.2	19	87	12	59	19	4	50	26	1.67
18162952--18162998	7	6.6	7	97	2	85	40	0	0	59	0.97
18162951--18163025	7	9.2	8	80	16	68	37	0	2	60	1.11
18163814--18163855	18	2.6	16	81	11	50	47	4	0	47	1.23
18163918--18163979	14	4.4	14	77	0	61	41	40	1	16	1.57
18163918--18163979	7	8.9	7	78	7	54	41	40	1	16	1.57
18164065--18164132	14	4.7	14	72	5	55	45	29	1	23	1.62
18164065--18164100	15	2.4	15	90	0	54	50	30	0	19	1.48
18164248--18164361	48	2.4	47	83	15	155	20	0	29	50	1.49
18164366--18164534	41	4.1	41	89	2	223	21	22	17	37	1.94
18164385--18164534	41	3.6	41	92	0	246	22	24	16	36	1.94
18164919--18164963	20	2.3	20	88	3	65	11	17	4	66	1.38
18167824--18167908	28	3.0	28	85	0	125	55	8	7	29	1.56
18170229--18170360	48	2.8	48	75	8	142	26	18	27	28	1.98
18170288--18170453	90	1.8	90	83	2	217	28	18	25	27	1.98
18170286--18170477	90	2.1	90	79	1	206	27	18	26	28	1.98
18170816--18170903	44	2.0	44	97	0	167	22	36	5	35	1.78
18183885--18184046	42	3.8	42	87	1	216	25	23	17	32	1.97
18189625--18189698	29	2.5	30	82	12	100	28	14	28	28	1.96
18189656--18190157	174	2.9	174	97	0	941	29	14	24	30	1.95
18193571--18193598	12	2.3	12	100	0	56	28	35	35	0	1.58
18201859--18202730	40	21.8	40	98	0	360	31	25	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18201903--18202729	80	10.3	80	98	0	1584	31	25	20	22	1.98
18201903--18202729	120	6.9	120	98	0	1584	31	25	20	22	1.98
18223884--18223908	13	1.9	13	100	0	50	0	48	28	24	1.52
18228300--18228351	26	2.0	26	88	7	79	40	28	21	9	1.84
18234701--18234726	13	2.0	13	100	0	52	30	0	7	61	1.24
18236075--18236182	40	2.7	39	91	5	171	23	22	26	27	1.99
18236087--18236212	40	3.2	40	87	3	175	23	21	26	28	1.99
18243878--18243946	33	2.1	33	97	0	129	40	11	14	33	1.82
18244345--18244388	20	2.1	21	84	16	56	29	11	22	36	1.89
18245838--18246061	47	4.7	48	78	11	212	27	19	28	24	1.99
18245882--18246061	50	3.7	47	82	8	182	27	20	29	23	1.98
18250925--18250983	30	2.0	30	82	0	73	40	5	27	27	1.77
18256255--18256309	25	2.2	25	90	0	83	23	18	12	45	1.83
18256305--18256338	17	2.0	17	88	0	50	32	20	5	41	1.76
18258589--18258637	24	2.0	24	88	0	71	34	2	36	26	1.68
18260056--18260167	27	4.2	26	75	12	91	16	24	21	37	1.94
18262463--18262693	28	8.3	28	81	6	204	32	21	21	24	1.98
18264254--18264340	45	1.9	46	85	2	122	34	21	4	39	1.74
18269339--18269430	29	3.1	28	74	13	78	28	14	17	40	1.88
18278174--18278357	40	4.6	40	81	6	221	25	23	26	24	2.00
18278174--18278357	80	2.3	80	85	3	246	25	23	26	24	2.00
18281238--18281425	40	4.7	40	95	0	313	22	26	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18282164--18282372	105	2.0	105	99	0	409	34	10	11	44	1.73
18285159--18285439	48	5.9	48	79	4	289	25	28	18	26	1.98
18285159--18285439	96	2.9	96	85	3	345	25	28	18	26	1.98
18288219--18288272	10	5.5	10	82	2	65	24	9	3	62	1.41
18290708--18290935	33	7.0	33	90	3	266	32	22	10	35	1.87
18290831--18290935	32	3.2	32	91	1	156	34	22	10	32	1.88
18290928--18291012	29	2.9	29	94	0	143	25	28	14	31	1.94
18291006--18291209	31	6.6	31	89	1	302	27	25	18	27	1.98
18290972--18291209	93	2.6	93	85	4	313	26	26	18	28	1.98
18292797--18292914	43	2.8	42	81	7	148	29	25	14	30	1.95
18295691--18295794	42	2.5	42	85	0	127	19	35	23	22	1.96
18299937--18300063	48	2.8	43	75	10	119	27	15	29	26	1.96
18307606--18307819	46	4.6	45	79	11	195	28	18	29	23	1.98
18309593--18309950	140	2.5	140	81	9	397	27	18	28	24	1.98
18309595--18309956	94	3.9	94	76	14	256	27	18	28	24	1.98
18311977--18312016	21	2.0	20	95	5	71	15	40	25	20	1.90
18321903--18322039	46	2.9	49	76	13	162	28	26	20	24	1.99
18321915--18322058	46	3.1	44	73	15	123	28	26	20	24	1.99
18329031--18329116	46	1.9	45	85	4	120	30	27	19	22	1.98
18343906--18343957	20	2.6	20	93	0	95	15	28	32	23	1.95
18352469--18352508	20	2.0	20	85	0	53	20	25	35	20	1.96
18352384--18352937	284	2.0	284	94	0	964	31	21	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18357327--18357364	19	2.0	20	89	5	60	28	13	0	57	1.36
18357769--18357805	19	1.9	19	94	0	65	24	29	8	37	1.84
18360056--18360080	9	2.8	9	100	0	50	0	8	0	92	0.40
18368200--18368246	19	2.3	20	82	10	60	36	0	14	48	1.44
18368601--18368956	50	7.1	50	78	5	405	26	18	25	29	1.98
18368596--18368956	151	2.4	150	81	6	424	26	18	25	29	1.98
18380442--18380511	27	2.6	27	95	2	113	31	28	12	27	1.93
18380442--18380539	28	3.5	28	90	2	135	31	28	13	26	1.94
18381108--18381225	59	2.0	59	98	0	227	36	19	10	33	1.85
18382475--18382499	11	2.3	11	100	0	50	76	8	0	16	1.02
18388932--18388980	20	2.5	20	81	15	66	12	24	6	57	1.58
18389183--18389361	50	3.6	50	82	3	184	21	27	21	29	1.99
18389235--18389377	50	2.9	50	84	0	187	20	27	22	28	1.99
18389766--18389824	30	2.0	30	83	6	75	30	22	6	40	1.79
18390134--18390158	11	2.3	11	100	0	50	76	8	0	16	1.02
18396591--18396639	20	2.5	20	81	15	66	12	24	6	57	1.58
18396849--18397222	49	7.6	49	78	8	427	21	25	20	32	1.98
18396849--18397222	99	3.8	99	99	0	739	21	25	20	32	1.98
18397184--18397260	38	2.0	38	89	0	118	25	22	15	36	1.93
18397228--18397372	50	2.9	50	78	2	155	21	26	21	31	1.98
18403399--18403465	21	3.3	21	74	18	70	26	35	4	32	1.77
18411908--18412016	55	2.0	55	85	0	146	33	20	21	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18413060--18413097	19	2.0	19	85	10	51	21	42	0	36	1.53
18422759--18422796	19	2.0	19	85	10	51	21	42	0	36	1.53
18423813--18424165	177	2.0	177	97	0	661	30	24	12	32	1.92
18424478--18424959	242	2.0	242	96	0	883	37	23	10	28	1.87
18425172--18425437	27	9.6	27	79	8	237	29	28	15	26	1.96
18425225--18425291	34	2.0	33	88	2	98	28	32	14	23	1.95
18425172--18425346	88	2.0	88	96	0	323	30	30	14	24	1.94
18425172--18425436	88	3.2	82	86	6	293	29	29	15	26	1.96
18425447--18425850	205	2.0	208	95	2	733	31	25	10	32	1.89
18430843--18430897	27	2.0	27	85	0	74	34	25	16	23	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126