genome.fa.s14.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  39  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11332344--11332387	6	7.2	6	79	5	52	18	18	15	47	1.83
11333439--11333505	27	2.5	27	97	0	125	31	20	32	14	1.93
11333686--11333758	22	2.9	26	84	15	100	53	12	0	34	1.38
11333791--11333847	27	2.1	27	90	0	87	35	1	14	49	1.53
11334011--11334051	19	2.2	19	95	0	73	51	17	0	31	1.46
11334068--11334142	27	2.8	27	93	0	132	22	37	22	17	1.94
11344066--11344138	26	2.9	25	80	8	76	16	21	21	39	1.92
11344176--11344237	24	2.5	24	84	7	72	19	25	19	35	1.95
11344222--11344292	24	2.9	24	77	10	72	21	19	19	39	1.93
11345402--11345447	20	2.3	20	96	0	83	36	4	6	52	1.47
11345832--11345886	18	3.2	17	77	15	51	10	1	5	81	0.92
11345834--11345884	26	2.0	26	81	14	61	7	1	5	84	0.85
11345847--11345876	8	3.8	8	95	0	51	3	0	10	86	0.67
11346469--11346501	11	3.0	11	95	0	57	63	12	9	15	1.51
11354965--11355045	30	2.6	30	81	9	83	32	6	12	49	1.65
11357046--11357085	19	2.2	18	86	8	55	45	10	15	30	1.78
11357201--11357759	278	2.0	278	100	0	1118	20	13	16	50	1.78
11358192--11358441	24	10.7	24	70	15	148	34	6	4	55	1.46
11358266--11358419	69	2.2	69	79	8	172	35	7	4	53	1.49
11358490--11358534	23	2.0	23	90	0	72	31	6	4	57	1.44
11363178--11363223	24	1.9	24	82	8	58	21	4	0	73	1.00
11368942--11369005	31	2.1	31	90	0	101	32	10	10	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11369501--11369554	27	2.0	27	85	3	72	35	14	0	50	1.44
11390262--11390286	2	12.5	2	100	0	50	0	48	0	52	1.00
11397344--11397402	20	3.0	20	76	16	68	35	0	1	62	1.05
11397285--11397408	9	13.7	9	70	18	55	28	1	2	67	1.12
11397295--11397401	10	10.5	10	68	23	55	28	1	1	67	1.12
11397346--11397409	19	3.3	19	73	18	60	31	0	3	65	1.08
11401640--11401667	12	2.3	12	100	0	56	21	0	0	78	0.75
11401620--11401668	20	2.3	21	82	6	64	22	0	2	75	0.90
11404262--11404400	46	3.0	46	89	0	206	35	9	25	30	1.87
11406839--11406983	42	3.5	42	78	5	132	16	19	19	44	1.86
11409632--11409664	7	4.7	7	100	0	66	69	0	0	30	0.88
11412150--11412201	26	2.0	26	88	7	79	53	7	0	38	1.30
11412159--11412221	26	2.3	26	83	8	72	55	7	0	36	1.29
11422472--11422506	17	2.1	17	94	0	61	51	8	17	22	1.72
11429357--11429387	16	1.9	16	93	0	53	25	6	0	67	1.14
11430914--11430951	19	2.0	20	94	5	69	23	2	5	68	1.23
11437828--11437872	18	2.5	18	96	0	81	37	13	15	33	1.86
11445404--11445434	11	2.8	11	95	0	53	29	3	48	19	1.64
11462943--11462990	21	2.3	20	89	10	71	39	8	29	22	1.83
11468684--11468718	8	4.4	8	100	0	70	37	0	11	51	1.38
11469046--11469178	41	3.2	41	88	2	178	26	18	24	30	1.97
11470873--11471060	21	9.0	21	66	2	99	44	16	22	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11470906--11471071	42	4.0	42	84	3	190	44	17	22	15	1.86
11480361--11480394	14	2.5	13	86	9	50	29	0	0	70	0.87
11482829--11482859	12	2.6	12	94	0	53	77	3	16	3	1.03
11483200--11483438	87	2.7	87	86	0	307	22	21	22	33	1.98
11486767--11486861	38	2.5	37	78	13	97	36	12	1	49	1.48
11498137--11498167	12	2.6	12	94	0	53	77	3	16	3	1.03
11498749--11498987	87	2.7	87	83	0	307	23	22	21	32	1.98
11501791--11501840	3	16.7	3	100	0	100	68	0	0	32	0.90
11504212--11504256	20	2.2	20	88	0	63	28	0	2	68	1.01
11504225--11504269	19	2.4	18	82	7	54	35	0	2	62	1.08
11506434--11506506	22	3.3	22	82	17	89	27	27	1	43	1.63
11506437--11506504	33	2.1	33	86	5	93	26	27	1	44	1.63
11506434--11506506	11	6.5	12	75	19	77	27	27	1	43	1.63
11506468--11506565	51	1.9	51	83	4	126	27	24	3	44	1.68
11508155--11508722	125	4.5	125	85	2	728	30	22	16	30	1.96
11508155--11508722	252	2.3	249	86	2	771	30	22	16	30	1.96
11511081--11511153	22	3.3	22	82	17	89	27	27	1	43	1.63
11511084--11511151	33	2.1	33	86	5	93	26	27	1	44	1.63
11511081--11511153	11	6.5	12	75	19	77	27	27	1	43	1.63
11511115--11511212	51	1.9	51	83	4	126	27	24	3	44	1.68
11512802--11513369	125	4.5	125	85	2	728	30	22	16	30	1.96
11512802--11513369	252	2.3	249	86	2	771	30	22	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11523202--11523252	19	2.7	19	87	6	68	41	0	1	56	1.10
11523484--11523534	23	2.2	24	82	6	61	49	0	7	43	1.32
11524850--11524899	25	2.0	24	92	3	82	54	2	4	40	1.31
11524850--11524902	24	2.2	24	90	6	81	56	1	3	37	1.28
11529160--11529209	24	2.1	24	100	0	100	38	8	24	30	1.84
11536655--11536780	43	2.9	42	80	12	148	19	19	30	31	1.96
11537063--11537504	47	9.5	47	89	1	649	32	11	14	40	1.83
11537063--11537504	93	4.7	94	90	1	649	32	11	14	40	1.83
11537460--11537504	21	2.1	22	87	4	65	28	13	15	42	1.85
11539013--11539778	44	17.7	43	69	12	410	28	21	22	27	1.99
11539052--11539515	129	3.6	129	95	0	793	28	22	22	27	1.99
11539146--11539870	88	8.3	88	74	7	392	29	21	22	26	1.99
11539272--11539808	217	2.5	217	94	0	923	29	21	21	26	1.99
11539489--11539730	129	1.9	129	92	0	412	28	21	22	26	1.99
11539013--11539645	258	2.5	255	83	6	794	28	22	21	27	1.99
11539146--11539877	44	16.7	43	68	11	326	29	21	21	26	1.99
11542551--11542575	4	6.2	4	100	0	50	24	0	0	76	0.80
11545262--11545321	21	2.7	22	75	12	52	33	3	3	60	1.30
11550246--11550302	5	11.2	5	92	3	96	40	17	1	40	1.60
11553826--11553866	20	2.1	19	86	13	57	65	0	0	34	0.93
11554145--11554197	27	2.0	28	81	7	65	52	16	1	28	1.54
11557003--11557033	2	15.5	2	100	0	62	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11561944--11561982	18	2.1	18	85	4	51	56	0	7	35	1.28
11562008--11562059	13	4.0	13	76	13	54	50	0	1	48	1.12
11563575--11563642	31	2.2	31	89	2	102	44	8	10	36	1.70
11567120--11567160	21	2.0	21	90	0	64	19	29	21	29	1.98
11583036--11583101	30	2.2	30	86	0	96	24	16	7	51	1.70
11585519--11586012	84	5.9	83	82	3	487	34	31	15	18	1.92
11587906--11587964	28	2.1	29	87	3	84	32	5	13	49	1.64
11587911--11587972	28	2.1	28	85	5	79	35	8	9	46	1.66
11588864--11589217	196	1.8	196	83	3	471	36	22	12	28	1.91
11594780--11594815	11	3.2	11	96	4	63	16	38	0	44	1.48
11597204--11597395	54	3.6	54	100	0	384	26	19	23	30	1.98
11599743--11600118	125	3.0	123	90	2	599	32	22	15	29	1.95
11602786--11602843	9	6.4	9	83	0	80	41	24	10	24	1.86
11602786--11602843	18	3.2	18	90	0	89	41	24	10	24	1.86
11603600--11603663	31	2.1	31	100	0	128	15	14	6	64	1.48
11605644--11605754	31	3.6	31	81	0	123	40	10	1	46	1.49
11608044--11608104	31	2.0	31	90	0	95	47	9	6	36	1.63
11619990--11620030	21	2.0	21	85	9	57	36	0	0	63	0.95
11626347--11626390	21	2.1	21	91	0	70	20	29	20	29	1.98
11629605--11629713	30	3.3	30	68	20	83	56	3	32	7	1.44
11629654--11630225	93	6.0	93	79	14	605	55	3	32	7	1.47
11629838--11629893	27	2.1	27	89	0	85	66	0	30	3	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11629928--11629959	6	5.3	6	100	0	64	50	0	50	0	1.00
11629852--11630051	105	1.9	105	90	2	321	54	3	34	8	1.48
11629939--11629994	30	2.0	29	86	10	80	60	1	32	5	1.29
11630033--11630088	27	2.1	27	82	0	67	62	1	33	1	1.16
11629674--11630223	288	1.9	292	86	6	792	55	3	32	8	1.48
11630213--11630262	12	3.9	12	75	14	55	64	0	32	4	1.12
11630202--11630270	27	2.6	26	72	6	66	57	4	33	4	1.38
11630352--11630394	17	2.6	16	82	13	52	62	2	34	0	1.08
11631906--11632118	37	5.8	37	94	0	363	38	14	21	25	1.91
11632081--11632204	46	2.8	46	91	3	200	33	16	22	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126