genome.fa.s14.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  69  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20568142--20568185	23	1.9	23	95	0	79	70	9	6	13	1.33
20568252--20568284	11	2.9	12	82	17	52	69	6	0	24	1.10
20568252--20568293	22	1.9	22	85	9	59	69	4	2	23	1.20
20568317--20568420	19	5.4	18	70	19	68	75	0	4	18	1.02
20568322--20568420	41	2.6	37	76	16	103	76	1	4	18	0.99
20568328--20568415	25	3.5	26	70	20	53	76	1	3	19	1.00
20568317--20568412	10	9.7	9	81	11	75	76	1	4	18	1.01
20569066--20569141	20	3.8	20	82	0	89	25	34	28	11	1.91
20570668--20570710	21	2.0	21	95	0	77	34	6	13	44	1.72
20572337--20572379	18	2.4	18	80	7	52	69	4	2	23	1.18
20574747--20574983	29	8.1	29	76	9	196	35	23	14	26	1.93
20576834--20576920	42	2.0	43	88	2	131	24	12	16	47	1.81
20581157--20581183	13	2.1	13	100	0	54	25	0	29	44	1.54
20589351--20589390	20	2.0	20	85	9	55	55	0	0	45	0.99
20592945--20592981	5	7.6	5	90	3	58	16	2	18	62	1.45
20593811--20594146	44	7.7	45	68	14	114	28	23	18	28	1.98
20593660--20594142	216	2.2	217	88	0	689	28	23	18	29	1.98
20594029--20594146	44	2.7	44	83	13	145	28	26	17	27	1.98
20595911--20596038	45	2.8	45	90	0	184	19	21	17	42	1.90
20601885--20601980	45	2.1	46	94	1	167	19	34	9	36	1.84
20607892--20607929	19	2.0	20	84	5	51	39	13	10	36	1.79
20613553--20613577	4	6.2	4	100	0	50	76	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20616578--20616620	21	2.0	21	86	0	59	23	37	6	32	1.82
20620908--20620938	15	2.1	15	94	5	55	25	6	6	61	1.45
20629192--20629276	28	3.1	28	70	3	82	29	22	15	32	1.94
20629187--20629294	55	2.0	55	83	0	135	30	23	14	31	1.94
20641969--20642002	6	5.7	6	100	0	68	14	0	0	85	0.60
20649086--20649270	79	2.3	81	84	7	236	24	22	27	25	2.00
20649087--20649270	40	4.6	40	83	9	216	24	22	27	25	2.00
20649139--20649303	79	2.1	79	84	6	210	26	21	27	25	1.99
20657058--20657242	79	2.3	81	84	7	236	24	22	27	25	2.00
20657059--20657242	40	4.6	40	83	9	216	24	22	27	25	2.00
20657111--20657275	79	2.1	79	84	6	210	26	21	27	25	1.99
20666488--20666536	20	2.5	20	86	0	62	22	22	0	55	1.44
20672620--20672686	29	2.3	29	81	0	89	31	20	16	31	1.95
20672653--20672845	61	3.2	61	79	2	219	30	22	13	33	1.93
20682033--20682066	16	2.2	15	89	5	50	44	0	0	55	0.99
20682732--20682790	25	2.4	23	83	13	73	37	1	1	59	1.18
20685315--20685386	35	2.1	35	91	0	117	22	12	13	51	1.75
20706964--20707015	26	2.0	26	100	0	104	34	0	19	46	1.50
20715186--20715561	180	2.1	180	100	0	752	40	14	9	34	1.79
20716319--20716543	50	4.4	50	79	6	186	24	25	20	29	1.99
20716351--20716548	50	3.8	50	81	4	189	24	27	19	27	1.99
20718760--20718794	12	2.9	12	100	0	70	8	51	5	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20719295--20719355	30	2.0	30	90	0	95	50	9	18	21	1.75
20722892--20723069	89	2.0	89	97	0	338	29	32	12	24	1.93
20724138--20724212	25	3.0	25	73	23	77	32	17	24	26	1.97
20731434--20731509	25	3.0	25	79	11	93	27	21	26	25	1.99
20734297--20734345	25	1.9	26	87	4	73	65	2	4	28	1.22
20741484--20741539	26	2.2	26	83	0	67	28	1	5	64	1.26
20742210--20742278	34	2.1	33	86	7	97	42	8	10	39	1.70
20744030--20744066	19	1.9	19	88	0	56	54	8	0	37	1.30
20744267--20744322	14	3.9	14	73	13	51	53	7	0	39	1.28
20744791--20744831	16	2.6	16	80	0	55	68	2	4	24	1.22
20745294--20745334	16	2.5	17	77	18	50	19	2	0	78	0.87
20745273--20745321	19	2.6	19	84	9	66	18	0	6	75	1.00
20745452--20745486	17	2.1	17	94	0	61	34	14	28	22	1.93
20751863--20751895	17	1.9	17	100	0	66	54	18	3	24	1.57
20755181--20755218	20	2.0	20	89	5	60	76	2	10	10	1.12
20756891--20756945	23	2.4	23	82	11	60	36	0	21	41	1.54
20760918--20760961	23	1.9	22	82	17	54	36	25	0	38	1.56
20761006--20761098	45	2.1	44	87	2	132	34	21	17	26	1.95
20763966--20764047	42	2.0	42	82	4	103	32	23	13	30	1.93
20769524--20769553	14	2.1	14	93	0	51	40	13	0	46	1.43
20774588--20774741	56	2.8	54	82	3	200	35	14	26	23	1.93
20774730--20774787	29	2.0	29	96	0	107	39	6	34	18	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20774734--20774796	29	2.2	29	88	0	90	42	4	33	19	1.72
20775093--20775261	30	5.7	30	75	8	130	17	14	23	44	1.85
20775159--20775348	28	6.7	28	71	12	109	18	15	21	43	1.87
20775093--20775348	88	3.0	88	83	4	326	18	15	22	43	1.87
20776806--20776842	18	2.1	18	89	0	56	45	13	8	32	1.73
20777397--20777432	17	2.1	17	94	0	63	61	5	0	33	1.19
20777397--20777432	15	2.2	16	90	9	56	61	5	0	33	1.19
20777439--20777519	43	1.9	42	89	2	126	48	3	14	33	1.62
20784426--20784477	24	2.2	24	85	0	68	48	11	3	36	1.58
20788699--20788746	24	2.0	24	87	0	69	47	10	4	37	1.57
20797866--20797989	28	4.5	28	83	4	126	8	18	23	49	1.75
20797887--20797989	27	3.8	26	80	11	100	8	16	24	50	1.73
20797942--20798008	27	2.5	27	82	4	73	13	16	19	50	1.77
20802721--20802754	16	2.1	16	100	0	68	20	26	5	47	1.73
20806612--20806701	28	3.2	28	77	1	101	10	21	24	44	1.82
20813537--20813614	27	2.9	27	80	0	84	15	23	30	30	1.95
20813724--20813786	26	2.4	26	78	0	72	22	17	33	26	1.96
20815948--20816072	58	2.2	58	79	2	144	26	14	21	37	1.92
20821851--20821966	58	2.0	58	98	0	223	38	16	6	37	1.75
20825606--20825649	23	1.9	22	82	17	54	36	25	0	38	1.56
20825694--20825781	45	1.9	46	90	6	144	35	23	15	25	1.95
20825785--20825980	51	3.9	51	75	6	191	31	29	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20825792--20825976	101	1.8	101	87	3	273	31	28	16	23	1.96
20830957--20831005	16	3.1	16	93	0	89	40	6	32	20	1.77
20831238--20831272	18	2.0	17	88	5	52	54	0	0	45	0.99
20831266--20831572	61	5.1	60	67	18	190	47	5	2	44	1.39
20831218--20831655	120	3.7	120	92	1	700	48	4	1	45	1.33
20838513--20838544	15	2.1	15	94	0	55	28	9	25	37	1.87
20839197--20839269	28	2.5	29	82	4	76	23	24	28	23	1.99
20839222--20839279	30	1.9	30	96	0	107	29	20	25	24	1.99
20839391--20839464	26	2.8	26	87	0	103	39	24	21	14	1.91
20839642--20839947	27	11.3	27	83	2	346	19	18	18	43	1.88
20847040--20847102	26	2.4	26	89	0	90	39	22	22	15	1.92
20854449--20854473	10	2.5	10	100	0	50	20	20	0	60	1.37
20856346--20856480	39	3.5	39	84	0	180	35	19	29	15	1.93
20856372--20856472	19	5.2	19	62	13	53	34	17	31	15	1.92
20861016--20861073	26	2.2	27	78	9	66	41	18	5	34	1.73
20861660--20861703	23	1.9	23	85	0	61	45	9	6	38	1.63
20862236--20862287	24	2.2	24	89	0	77	53	7	3	34	1.48
20864770--20864804	17	1.9	19	88	11	56	40	0	2	57	1.14
20864770--20864814	18	2.6	18	86	10	58	40	0	4	55	1.20
20866496--20866546	17	3.1	17	86	8	70	68	1	0	29	1.00
20867189--20867249	29	2.1	29	93	6	106	57	0	9	32	1.32
20868595--20868625	3	10.3	3	100	0	62	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20874342--20874380	18	2.2	18	85	0	51	61	2	23	12	1.43
20879901--20879945	21	2.2	20	84	8	54	37	0	0	62	0.96
20881836--20881866	15	2.1	15	93	0	53	51	6	22	19	1.69
20884386--20884415	13	2.3	13	94	0	51	56	6	6	30	1.51
20888558--20888883	86	3.8	86	99	0	643	34	16	15	34	1.90
20891546--20891572	12	2.2	12	100	0	54	51	7	0	40	1.30
20892060--20892237	27	6.6	27	83	3	205	26	15	28	29	1.96
20892061--20892216	82	1.9	81	88	3	233	26	15	28	29	1.96
20892057--20892237	82	2.2	81	83	2	229	27	15	27	29	1.96
20901186--20901449	40	6.7	40	89	5	360	25	21	27	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126