genome.fa.s14.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  64  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18713673--18713698	13	2.0	13	100	0	52	23	15	23	38	1.92
18717148--18717192	24	1.9	23	86	13	65	46	11	0	42	1.39
18731714--18731762	24	2.0	26	88	8	75	30	4	0	65	1.11
18731714--18731774	26	2.5	23	84	10	68	29	3	0	67	1.07
18735390--18735427	20	1.9	20	84	10	51	42	13	23	21	1.88
18737745--18737789	20	2.1	22	84	15	60	26	13	26	33	1.93
18742916--18742957	20	2.1	20	100	0	84	52	9	28	9	1.65
18744260--18744296	14	2.6	14	95	0	65	54	0	35	10	1.36
18751857--18751888	15	2.1	15	94	0	55	62	0	3	34	1.11
18756808--18756861	24	2.3	22	84	12	72	27	1	1	68	1.10
18757053--18757126	29	2.5	29	81	12	89	50	13	12	24	1.76
18757102--18757168	28	2.4	28	94	2	116	46	16	17	19	1.85
18757102--18757181	28	2.8	28	88	5	108	45	16	16	22	1.85
18758420--18758477	29	2.0	30	86	6	84	43	6	13	36	1.71
18766502--18766531	3	10.0	3	92	0	51	63	0	3	33	1.11
18776815--18776839	2	12.5	2	100	0	50	0	0	48	52	1.00
18782693--18782728	14	2.6	14	95	4	65	52	0	0	47	1.00
18784942--18785056	60	1.9	61	85	8	164	33	17	10	38	1.84
18785119--18785265	60	2.4	59	85	7	197	38	11	21	28	1.88
18788422--18788501	31	2.6	30	76	7	81	40	2	1	56	1.21
18788422--18788499	30	2.6	30	78	10	79	39	2	1	56	1.21
18788456--18788501	21	2.1	21	84	11	58	43	4	0	52	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18790300--18790361	29	2.1	30	93	3	108	64	3	4	27	1.29
18793223--18793273	22	2.4	22	83	9	61	72	3	0	23	1.01
18794502--18794646	59	2.4	60	79	1	148	37	9	11	41	1.73
18794543--18794654	60	1.9	59	81	5	136	39	10	10	39	1.75
18807008--18807185	46	3.8	46	89	0	248	19	23	14	42	1.88
18807224--18807468	54	4.5	54	100	0	490	30	23	19	26	1.98
18808687--18808723	20	1.9	20	88	5	58	51	8	0	40	1.32
18816370--18816405	17	2.2	16	90	9	56	86	0	2	11	0.68
18820189--18820215	5	5.4	5	100	0	54	18	0	0	81	0.69
18821863--18821897	18	1.9	18	88	11	54	65	2	0	31	1.07
18821863--18821903	18	2.4	17	84	15	50	65	2	0	31	1.05
18822603--18822629	5	5.4	5	100	0	54	18	0	0	81	0.69
18824303--18824337	18	1.9	18	88	11	54	65	2	0	31	1.07
18824303--18824343	18	2.4	17	84	15	50	65	2	0	31	1.05
18825043--18825093	24	2.1	24	81	0	57	52	1	3	41	1.31
18825174--18825243	31	2.3	31	89	0	113	55	1	2	40	1.23
18825959--18826010	25	2.1	25	82	7	61	36	1	3	57	1.28
18826269--18826301	14	2.4	14	90	10	50	51	6	3	39	1.42
18827230--18827280	15	3.3	16	75	5	52	58	0	0	41	0.98
18827485--18827574	20	4.3	20	75	12	67	41	1	1	56	1.14
18827459--18827548	45	2.0	44	80	8	101	40	1	2	56	1.19
18830659--18830705	24	2.0	24	83	8	60	53	2	0	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18835366--18835393	2	14.0	2	100	0	56	50	50	0	0	1.00
18837750--18837782	17	1.9	17	93	0	57	84	6	0	9	0.76
18840714--18840833	58	2.1	58	96	0	222	60	4	21	13	1.49
18843968--18844000	17	2.0	17	94	5	59	36	15	0	48	1.45
18848223--18848272	6	8.8	6	80	12	52	22	32	10	36	1.87
18848224--18848272	9	5.4	9	82	0	62	22	32	8	36	1.84
18848485--18848586	15	6.6	15	69	7	53	30	25	19	24	1.98
18848764--18848811	24	2.0	24	100	0	96	41	8	4	45	1.53
18849107--18849131	13	1.9	13	100	0	50	16	24	40	20	1.91
18859249--18859290	21	2.0	20	82	13	50	50	16	2	30	1.58
18861682--18861888	15	13.8	15	82	4	220	29	23	20	26	1.99
18861682--18861888	30	6.9	30	83	2	245	29	23	20	26	1.99
18869148--18869262	43	2.7	43	77	4	117	32	27	16	23	1.96
18870685--18870933	124	2.0	124	96	0	462	32	20	18	28	1.96
18877087--18877188	42	2.4	42	79	11	109	32	25	17	24	1.97
18880772--18880922	22	7.0	22	68	11	87	43	17	21	16	1.88
18880772--18880947	44	4.0	44	77	2	149	43	17	22	16	1.88
18880874--18880939	22	3.0	21	68	16	53	42	21	22	13	1.88
18893767--18893833	35	1.9	35	87	3	100	38	1	16	43	1.57
18893796--18893883	26	3.5	25	87	7	124	36	0	19	44	1.51
18893801--18893900	26	3.8	25	83	11	112	34	0	22	44	1.53
18893982--18894360	125	3.0	125	88	4	566	38	16	17	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18899314--18899390	26	3.2	26	66	27	78	27	5	6	61	1.42
18901015--18901047	17	1.9	17	100	0	66	36	0	0	63	0.95
18900992--18901122	58	2.3	55	82	8	149	42	1	4	51	1.31
18901250--18901305	16	3.5	16	90	7	87	26	28	7	37	1.83
18906340--18906450	52	2.1	52	91	5	177	61	3	1	33	1.24
18908324--18908361	16	2.4	16	95	0	67	34	5	31	28	1.80
18908529--18908672	58	2.5	57	80	10	152	52	3	2	40	1.33
18914827--18914856	15	1.9	16	93	6	53	43	0	40	16	1.48
18924439--18924522	41	2.0	41	88	0	123	19	7	17	55	1.64
18925241--18925297	22	2.8	20	78	17	62	15	8	12	63	1.52
18926435--18926517	42	2.0	42	90	0	130	39	24	21	14	1.91
18939117--18939362	131	1.9	131	85	1	341	24	18	21	35	1.95
18951062--18951269	45	4.6	45	72	11	181	33	17	20	27	1.96
18951057--18951361	137	2.2	137	92	1	513	34	17	20	27	1.95
18951404--18951436	16	1.9	18	88	11	52	45	18	30	6	1.73
18951955--18951992	14	2.8	14	88	4	51	2	15	0	81	0.80
18954919--18955054	43	3.1	44	84	6	186	25	17	29	27	1.97
18955324--18955521	38	5.2	38	90	3	258	21	22	26	29	1.99
18955514--18955686	45	3.9	45	84	6	210	22	23	29	24	1.99
18959784--18959863	3	26.7	3	80	9	74	63	6	3	26	1.35
18960977--18961002	9	2.9	9	100	0	52	0	0	7	92	0.39
18961504--18961950	88	5.0	88	79	5	445	28	16	22	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18961659--18961897	44	5.4	44	71	1	201	28	13	25	33	1.94
18961659--18961926	44	6.1	44	72	1	198	28	14	24	32	1.95
18961969--18962634	132	5.1	132	86	0	886	27	25	18	29	1.98
18962331--18962512	44	4.1	43	67	12	136	29	23	16	31	1.96
18965687--18966089	70	5.8	70	89	0	513	31	12	25	30	1.93
18965687--18966091	35	11.6	34	79	4	396	31	13	24	30	1.93
18966942--18966991	20	2.5	20	84	15	59	20	0	4	76	0.95
18971573--18971652	3	26.7	3	77	9	65	62	6	3	27	1.36
18973859--18973906	12	3.8	12	80	5	51	0	25	0	75	0.81
18973862--18973901	21	2.0	19	90	9	62	0	27	0	72	0.85
18977535--18977570	15	2.5	15	95	4	65	25	11	5	58	1.54
18982460--18982485	2	13.0	2	100	0	52	50	50	0	0	1.00
18983009--18983065	20	2.8	20	84	7	69	50	3	0	45	1.18
18983557--18983591	16	2.3	15	90	5	52	40	5	0	54	1.24
18983583--18983637	25	2.4	22	84	9	74	50	1	0	47	1.11
18997344--18997399	17	3.3	17	74	18	53	44	1	0	53	1.11
18997785--18997834	17	2.7	20	78	18	70	10	0	44	46	1.37
19000552--19000601	17	2.7	20	78	18	70	10	0	44	46	1.37
19009771--19009815	21	2.1	22	87	4	65	15	8	0	75	1.03
19010518--19010565	12	3.8	12	76	10	51	27	6	4	62	1.38
19010715--19010756	22	1.9	22	85	0	57	21	7	2	69	1.25
19011461--19011485	3	8.3	3	100	0	50	64	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19011607--19011657	3	17.3	3	75	4	50	60	3	1	33	1.26
19016599--19016758	74	2.1	75	84	4	207	50	11	12	25	1.74
19021306--19021421	25	4.6	25	80	4	110	30	19	25	25	1.98
19036946--19036993	23	2.0	25	84	12	64	50	6	14	29	1.67
19039872--19040049	27	6.6	27	83	3	205	26	15	28	29	1.96
19039873--19040028	82	1.9	81	88	3	233	26	15	28	29	1.96
19039869--19040049	82	2.2	81	83	2	229	27	15	27	29	1.96
19041704--19041769	32	2.1	32	97	0	123	27	12	3	57	1.49
19045356--19045920	282	2.0	282	99	0	1121	25	20	16	38	1.92
19049186--19049358	45	3.8	45	78	6	145	44	13	18	23	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126