genome.fa.s14.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  63  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18436990--18437030	11	3.7	11	93	0	73	41	51	0	7	1.30
18436980--18437031	22	2.3	23	87	9	81	38	51	0	9	1.35
18436990--18437054	25	2.7	25	83	6	73	38	50	3	7	1.47
18441269--18441315	14	3.3	14	85	5	58	48	2	4	44	1.34
18446376--18446433	29	2.0	28	86	3	80	31	6	8	53	1.58
18447274--18447338	3	22.3	3	87	6	98	1	30	1	66	1.10
18452714--18452821	43	2.6	43	81	10	125	33	25	21	20	1.97
18452828--18452935	40	2.7	41	94	2	191	23	25	19	32	1.97
18452982--18453020	20	2.0	20	85	10	53	33	20	0	46	1.51
18454184--18454260	23	3.3	23	92	0	118	48	9	1	41	1.43
18462901--18462938	15	2.7	15	84	12	53	60	13	0	26	1.33
18465891--18465952	16	3.9	16	85	8	90	41	4	32	20	1.74
18465890--18465954	32	2.0	32	93	0	112	41	4	33	20	1.72
18466156--18466336	61	3.0	60	71	12	181	49	5	1	43	1.35
18466116--18466336	120	1.8	120	95	0	397	49	4	1	44	1.32
18468932--18468978	19	2.6	18	78	15	53	46	2	6	44	1.40
18468932--18468981	17	2.7	19	76	11	52	46	2	6	46	1.39
18470819--18470863	3	15.0	3	95	0	81	31	0	2	66	1.04
18471307--18471353	16	2.8	17	70	9	51	31	2	2	63	1.18
18471427--18471459	10	3.4	10	87	4	50	30	0	0	69	0.88
18477151--18477191	21	2.0	21	85	9	57	39	17	12	31	1.86
18485147--18485196	23	2.3	22	86	6	66	22	22	8	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18489840--18489951	55	2.0	55	96	0	206	41	21	15	22	1.90
18491287--18491343	20	2.8	20	89	0	78	22	29	0	47	1.52
18491999--18492127	40	3.2	40	87	2	179	45	28	13	12	1.79
18497454--18497506	8	6.0	8	79	12	52	77	0	3	18	0.92
18497450--18497501	20	2.6	21	75	9	63	76	0	3	19	0.93
18500673--18500812	50	2.8	50	84	0	154	27	22	28	21	1.99
18500681--18500866	50	3.8	49	77	5	151	26	23	27	22	1.99
18505325--18505377	21	2.5	22	87	9	83	26	7	37	28	1.83
18505545--18505601	30	1.9	30	92	0	96	31	14	10	43	1.79
18506779--18506999	111	2.0	111	99	0	433	34	17	11	35	1.87
18511637--18511675	18	2.2	18	100	0	78	46	10	20	23	1.81
18516545--18516599	22	2.4	23	82	11	69	63	3	0	32	1.12
18519911--18519952	20	2.1	20	86	0	57	7	21	4	66	1.35
18523826--18523974	19	7.8	19	84	0	208	35	15	9	39	1.80
18523803--18523974	57	2.9	57	83	3	200	37	15	8	38	1.78
18523826--18523967	38	3.7	38	97	0	257	35	14	9	40	1.78
18524177--18524836	217	3.0	217	92	0	1090	27	23	19	30	1.98
18524706--18524817	40	2.6	42	80	14	115	27	22	22	27	1.99
18524182--18524839	44	15.2	44	69	14	282	27	22	19	30	1.98
18524856--18525565	44	16.1	44	61	14	158	26	23	18	31	1.98
18524836--18525712	132	6.6	132	88	0	1297	26	24	18	31	1.97
18524832--18525712	264	3.3	264	98	0	1672	26	24	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18526913--18526955	20	2.2	20	86	0	59	4	18	0	76	0.95
18526919--18526964	21	2.2	21	84	7	58	2	23	0	73	0.94
18526926--18526963	20	1.9	20	88	0	58	0	26	0	73	0.83
18531206--18532033	40	20.7	40	99	0	1606	32	14	12	39	1.84
18540315--18540358	23	2.0	22	86	4	61	22	4	18	54	1.61
18541027--18541067	18	2.3	18	100	0	82	43	24	0	31	1.54
18551231--18551295	32	2.0	33	96	3	123	58	3	3	35	1.29
18556575--18556640	29	2.2	29	78	2	69	57	1	12	28	1.44
18557947--18558222	51	5.1	52	85	10	319	30	21	6	41	1.78
18557988--18558222	58	4.2	58	85	11	294	29	22	5	41	1.77
18561986--18562018	2	16.5	2	93	0	57	51	45	0	3	1.16
18566000--18566192	63	3.1	63	82	0	188	26	20	21	31	1.98
18567785--18569039	644	1.9	643	92	1	2077	21	28	10	39	1.86
18576662--18576752	45	2.0	45	95	0	164	27	8	30	32	1.87
18576848--18577736	40	22.2	40	97	1	1631	24	20	27	27	1.99
18584293--18584376	21	4.3	19	70	14	55	48	9	3	38	1.53
18584293--18584405	58	1.9	58	98	0	217	48	10	3	37	1.55
18594656--18594735	40	2.0	40	97	0	151	26	26	10	37	1.88
18597363--18597533	93	1.8	94	96	1	317	56	9	8	25	1.61
18600605--18600637	15	2.2	15	100	0	66	48	6	6	39	1.53
18607739--18607856	61	1.9	61	92	0	200	48	6	2	42	1.43
18607734--18607836	31	3.4	30	70	8	91	51	5	2	39	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18609140--18609191	23	2.3	23	100	0	104	48	0	11	40	1.40
18621968--18622038	32	2.3	31	85	4	97	23	26	4	45	1.71
18626400--18626484	40	2.1	41	82	2	100	31	8	17	42	1.79
18626691--18626791	45	2.2	45	89	3	150	21	15	19	42	1.89
18632181--18632219	17	2.3	17	90	0	60	23	2	7	66	1.30
18633383--18633951	140	4.1	140	93	0	940	24	20	23	31	1.98
18637988--18638022	18	2.0	17	88	5	52	45	0	0	54	0.99
18638179--18638276	45	2.2	44	87	8	137	35	28	4	31	1.76
18639078--18639546	125	3.8	125	94	1	834	28	15	22	33	1.94
18639078--18639546	248	1.9	248	97	0	895	28	15	22	33	1.94
18639914--18640057	19	7.7	18	73	24	113	50	2	7	39	1.43
18639904--18640068	37	4.5	37	93	3	271	50	2	6	40	1.42
18639935--18640036	27	3.8	25	70	21	55	53	2	4	38	1.37
18640065--18640440	29	13.4	28	79	13	409	24	0	30	44	1.56
18640065--18640439	52	6.8	52	78	15	310	24	0	29	45	1.56
18640208--18640304	35	3.0	32	75	20	94	25	0	31	42	1.56
18640129--18640240	23	4.6	23	84	13	152	24	0	30	45	1.53
18640272--18640357	23	3.5	23	75	17	91	23	0	31	45	1.53
18640228--18640305	35	2.3	35	93	2	131	24	0	33	42	1.55
18642192--18642345	28	5.5	28	92	0	247	26	11	27	33	1.91
18643888--18644156	29	9.3	29	88	4	400	23	0	31	43	1.57
18643891--18644155	115	2.3	116	94	0	460	23	0	31	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18644355--18644401	21	2.2	21	85	7	60	2	27	34	36	1.69
18645349--18645374	7	3.7	7	100	0	52	57	15	0	26	1.38
18646553--18646595	22	2.0	22	95	0	77	46	0	25	27	1.53
18646451--18646746	147	2.0	147	99	0	583	49	2	18	29	1.61
18646700--18646752	22	2.4	22	87	3	70	47	0	26	26	1.53
18646737--18646769	10	3.0	11	86	13	50	45	0	36	18	1.49
18648609--18648640	13	2.6	12	90	9	55	25	12	18	43	1.85
18649838--18650050	72	2.9	72	79	3	205	24	17	16	40	1.90
18649955--18650056	36	2.8	38	79	7	120	23	18	17	40	1.91
18649827--18650036	36	5.9	34	68	13	136	23	17	17	41	1.90
18651480--18651574	47	2.0	47	85	0	127	28	11	25	34	1.91
18656178--18656218	19	2.2	19	91	4	66	58	4	0	36	1.20
18656172--18656219	19	2.5	20	80	10	64	58	4	0	37	1.18
18656217--18656261	12	3.9	11	80	8	54	64	2	6	26	1.30
18659608--18660435	4	207.0	4	100	0	1656	50	25	0	25	1.50
18661218--18661258	21	2.0	21	85	0	55	24	2	29	43	1.67
18683868--18683955	22	4.0	22	91	7	128	43	3	4	48	1.40
18687930--18688044	58	2.0	58	94	3	205	33	20	22	24	1.97
18688894--18688926	15	2.2	15	100	0	66	27	36	18	18	1.94
18694008--18694044	10	3.8	10	89	3	58	16	8	0	75	1.02
18694005--18694044	15	2.8	14	81	7	53	17	7	0	75	1.03
18697509--18697582	37	2.0	37	94	0	130	17	31	6	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18703029--18703079	17	3.0	17	79	0	66	29	17	19	33	1.95
18703029--18703092	34	1.9	33	87	3	92	28	17	20	34	1.95
18703032--18703091	17	3.6	16	78	8	57	25	18	21	35	1.96
18703741--18703803	26	2.4	26	100	0	126	20	12	6	60	1.54
18703741--18703803	13	4.8	13	84	0	90	20	12	6	60	1.54
18705183--18705219	19	1.9	20	88	5	58	51	5	8	35	1.55
18705607--18705642	18	1.9	19	88	5	56	69	8	13	8	1.36
18705628--18705673	16	2.8	16	83	3	56	67	4	26	2	1.21
18705938--18705976	16	2.5	17	80	19	50	48	17	0	33	1.48
18706630--18706710	18	4.6	17	71	21	51	2	24	3	69	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126