genome.fa.s14.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  21  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6259957--6260062	38	2.7	38	88	2	158	66	0	2	31	1.06
6269380--6269458	30	2.7	30	92	7	128	35	21	2	40	1.67
6269383--6269495	30	3.9	29	79	11	124	32	25	3	38	1.73
6270096--6270132	8	4.9	8	90	3	51	70	0	29	0	0.88
6270120--6270171	12	4.3	12	79	18	63	78	0	21	0	0.74
6270109--6270167	14	4.3	14	79	12	61	74	0	25	0	0.82
6270627--6270664	20	1.9	20	88	0	58	36	13	7	42	1.73
6270825--6270862	18	2.2	18	86	9	53	47	5	7	39	1.55
6270915--6270981	17	3.9	17	82	7	82	26	14	11	46	1.80
6270934--6270987	16	3.2	16	77	10	54	35	12	11	40	1.79
6270951--6271006	18	3.2	18	85	7	62	42	12	8	35	1.74
6280152--6280204	10	5.4	9	84	10	61	86	11	1	0	0.64
6280152--6280214	25	2.5	25	87	7	83	85	9	4	0	0.72
6280160--6280204	15	3.1	14	90	9	72	88	11	0	0	0.50
6281119--6282284	84	14.5	84	92	4	1466	28	15	20	34	1.94
6282545--6282663	30	4.0	30	71	12	102	33	25	4	36	1.75
6282544--6282661	59	2.0	59	83	8	150	34	25	3	36	1.73
6283245--6283297	14	3.8	13	85	14	63	79	0	20	0	0.74
6283248--6283295	10	4.7	10	80	14	53	79	0	20	0	0.74
6283256--6283346	12	7.8	12	68	16	66	78	0	14	7	0.97
6283278--6283369	45	2.0	45	95	0	166	76	0	10	13	1.03
6283257--6283364	11	9.5	11	77	10	65	76	0	12	10	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6283317--6283372	19	2.9	20	82	10	55	80	0	8	10	0.91
6283292--6283365	12	6.5	12	74	12	57	75	0	9	14	1.03
6283794--6283831	20	1.9	20	94	0	67	36	10	7	44	1.68
6283939--6284034	36	2.8	35	82	6	106	43	11	11	33	1.77
6283978--6284156	16	10.5	16	66	27	68	32	13	11	42	1.80
6283977--6284153	17	10.3	16	71	17	72	33	13	11	41	1.80
6283944--6284153	34	6.1	34	78	7	192	35	13	11	40	1.80
6283944--6284111	70	2.4	69	83	6	198	36	13	11	38	1.81
6283994--6284247	87	3.1	85	79	10	210	36	13	10	39	1.79
6283987--6284153	70	2.4	69	90	5	248	31	13	11	43	1.80
6284115--6284265	76	2.0	77	93	2	259	39	12	9	38	1.75
6284193--6284227	16	2.2	16	89	0	52	28	14	11	45	1.79
6284854--6284885	15	2.1	15	94	0	55	43	25	0	31	1.55
6285356--6285499	71	2.0	71	98	0	279	38	11	15	35	1.83
6287531--6287568	16	2.2	18	86	9	53	28	0	2	68	1.03
6289723--6290089	36	10.1	36	67	10	156	24	20	21	34	1.97
6289949--6290063	35	3.3	35	68	7	88	25	22	22	29	1.99
6289831--6290133	71	4.2	72	84	4	308	24	21	20	33	1.97
6290959--6291004	22	2.1	21	84	11	58	26	0	19	54	1.44
6294917--6294962	19	2.6	18	77	16	51	39	0	0	60	0.97
6295286--6295412	63	2.0	63	98	0	245	34	22	4	37	1.75
6298280--6298337	28	2.0	28	83	9	73	46	0	3	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6298455--6298535	38	2.1	38	88	6	117	39	0	6	54	1.26
6300023--6300053	7	4.4	7	100	0	62	61	0	0	38	0.96
6300023--6300061	21	1.9	20	89	5	60	64	0	0	35	0.94
6300629--6300671	21	2.0	21	86	0	59	30	2	13	53	1.53
6300634--6300682	21	2.3	21	78	0	53	30	2	14	53	1.52
6301489--6301557	33	2.1	33	83	5	86	46	5	4	43	1.47
6315098--6315123	13	2.0	13	100	0	52	53	0	0	46	1.00
6322390--6322429	18	2.2	19	86	4	55	52	20	2	25	1.59
6324817--6324851	3	11.7	3	87	0	52	68	5	0	25	1.11
6327861--6327969	41	2.6	41	92	1	173	24	22	28	23	2.00
6329467--6329515	25	2.0	25	88	8	73	46	0	2	51	1.12
6331131--6331255	41	3.0	41	85	1	151	27	18	21	32	1.97
6333879--6333973	24	4.0	25	79	10	92	14	23	24	37	1.92
6335332--6335382	6	8.2	6	93	2	75	62	0	21	15	1.32
6340845--6340888	20	2.3	19	76	7	52	52	0	11	36	1.38
6350230--6350681	126	3.6	126	91	0	737	29	17	23	28	1.97
6353716--6354060	53	6.5	53	90	3	552	42	4	9	44	1.55
6353683--6354060	159	2.4	158	91	4	608	41	3	10	44	1.56
6354163--6354235	22	3.3	22	75	7	76	23	0	31	45	1.53
6354157--6354419	22	11.9	22	64	14	69	25	0	25	47	1.57
6354276--6354386	21	5.2	21	70	9	64	26	0	24	48	1.57
6354447--6354727	21	13.4	21	67	13	114	24	0	25	49	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6354406--6354479	14	5.3	14	70	6	51	22	0	28	48	1.51
6354445--6354546	41	2.4	43	85	7	131	23	0	28	48	1.52
6354313--6354668	185	1.9	186	85	6	490	23	0	25	49	1.56
6354635--6354752	22	5.4	21	76	7	92	24	0	23	51	1.48
6354590--6354726	44	3.1	43	77	9	118	25	0	24	48	1.56
6354686--6354781	50	1.9	50	87	4	140	25	0	20	54	1.45
6354736--6354812	22	3.5	21	76	1	64	22	1	22	54	1.52
6354856--6354888	16	2.1	16	88	5	50	21	0	33	45	1.52
6354871--6354942	37	2.0	35	86	10	101	26	0	23	50	1.50
6354856--6354926	15	4.7	15	75	13	56	23	0	28	47	1.52
6364337--6364420	42	2.0	42	95	0	150	39	14	28	17	1.89
6371559--6371662	53	2.0	53	96	0	190	32	24	22	21	1.98
6373468--6373582	46	2.5	46	83	5	137	33	21	19	26	1.97
6373594--6373969	41	8.7	41	71	11	216	29	18	23	28	1.98
6373592--6373882	46	6.6	45	76	10	246	28	19	23	28	1.98
6373461--6373883	175	2.5	170	91	3	652	29	19	22	27	1.98
6373679--6373969	131	2.2	130	87	5	428	29	18	23	28	1.98
6376061--6376089	5	6.0	5	96	4	51	20	0	0	79	0.74
6379215--6379244	15	1.9	16	93	6	53	26	16	0	56	1.40
6391876--6391906	3	10.0	3	93	6	53	35	0	0	64	0.94
6400436--6400507	29	2.5	29	83	0	90	19	40	23	16	1.91
6407648--6407825	62	2.9	60	79	10	198	23	12	30	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6407648--6407825	61	2.9	63	82	7	222	23	12	30	33	1.91
6414803--6414851	24	2.0	24	92	0	80	26	4	2	67	1.19
6417602--6417681	29	2.7	29	86	5	97	30	12	12	45	1.79
6417602--6417692	30	3.0	29	79	4	92	30	14	10	43	1.80
6418472--6418502	14	2.2	14	94	0	53	48	12	0	38	1.42
6419325--6419382	30	1.9	30	82	0	71	15	31	36	17	1.91
6420544--6420574	7	4.6	7	96	4	55	45	0	0	54	0.99
6420600--6420628	11	2.7	11	94	5	51	37	0	0	62	0.96
6421696--6421780	25	3.4	25	91	0	134	17	24	21	36	1.94
6421697--6421826	50	2.8	47	83	6	140	17	25	17	39	1.92
6421735--6421826	22	4.0	23	81	12	84	18	27	16	38	1.92
6424543--6424726	40	4.6	41	84	8	213	25	27	22	24	2.00
6424543--6424726	79	2.3	82	81	12	224	25	27	22	24	2.00
6424543--6424684	39	3.6	39	86	6	182	25	28	21	24	1.99
6424648--6424918	134	2.0	134	97	1	508	29	26	15	28	1.96
6428040--6428072	12	2.6	13	85	9	50	12	0	3	84	0.72
6435458--6435528	30	2.3	31	79	13	76	53	7	0	39	1.28
6439016--6439054	16	2.3	18	86	8	55	41	7	12	38	1.72
6439014--6439069	18	3.1	19	77	17	64	44	7	12	35	1.70
6439302--6439356	23	2.6	20	78	16	58	74	1	1	21	1.01
6439830--6439883	18	3.0	18	84	10	58	0	24	0	75	0.80
6439845--6439894	19	2.7	18	81	6	55	0	32	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6439984--6440043	15	4.2	15	78	16	56	1	23	0	75	0.90
6439964--6440048	28	3.0	29	76	19	74	2	25	0	71	0.98
6439996--6440045	18	2.8	18	88	8	75	0	22	0	78	0.76
6439999--6440048	15	3.4	15	84	13	68	0	22	0	78	0.76
6441482--6441534	6	8.8	6	91	0	79	54	9	0	35	1.33
6455808--6456282	44	10.9	43	71	11	285	29	21	21	27	1.99
6455806--6456277	90	5.4	84	72	11	303	29	21	21	27	1.99
6455850--6456097	134	1.9	133	82	4	320	28	22	22	26	1.99
6455812--6456148	87	3.9	87	75	10	280	29	20	21	27	1.98
6458140--6458172	17	1.9	17	88	11	50	39	3	0	57	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126