genome.fa.s14.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  19  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5587813--5587859	24	2.0	24	84	16	62	34	0	14	51	1.43
5620377--5620427	23	2.2	24	82	10	70	37	0	9	52	1.34
5620386--5620426	13	3.4	13	77	19	52	36	0	12	51	1.40
5642021--5642062	21	2.0	21	81	9	50	9	23	0	66	1.21
5643155--5643198	24	1.9	24	90	9	74	36	0	2	61	1.09
5643295--5643322	9	3.1	9	100	0	56	57	10	0	32	1.33
5643265--5643406	68	2.1	66	94	2	248	45	9	4	40	1.58
5643395--5643436	16	2.6	16	92	0	66	42	7	2	47	1.43
5643265--5643428	68	2.5	66	86	10	216	45	9	4	40	1.55
5646059--5646210	13	11.2	13	71	15	67	36	4	5	53	1.44
5646125--5646201	13	5.8	13	79	11	75	38	2	2	55	1.27
5646102--5646210	40	2.7	40	80	9	123	37	3	3	55	1.35
5648823--5648847	10	2.5	10	100	0	50	12	12	8	68	1.40
5648861--5648919	30	2.0	30	96	0	109	37	8	22	32	1.84
5654530--5654573	5	9.2	5	81	18	58	40	0	0	59	0.98
5654531--5654573	19	2.3	19	92	8	70	41	0	0	58	0.98
5655701--5655800	41	2.6	37	73	6	92	22	20	30	28	1.98
5658671--5658737	32	2.1	32	94	0	116	25	26	7	40	1.82
5660348--5660438	46	2.0	46	97	0	173	20	18	5	54	1.63
5663042--5663074	7	4.6	7	92	7	57	66	3	0	30	1.06
5668511--5668569	30	2.0	30	90	6	93	15	42	28	13	1.85
5672669--5673046	189	2.0	188	93	0	639	33	12	15	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5675339--5675372	15	2.3	15	90	5	52	70	0	0	29	0.87
5686961--5687423	27	17.1	27	76	5	362	20	16	21	41	1.90
5686961--5687423	81	5.7	81	77	7	420	20	16	21	41	1.90
5700586--5700611	2	13.0	2	100	0	52	50	0	50	0	1.00
5707872--5708362	27	18.2	27	85	1	572	20	17	20	41	1.91
5725640--5725863	41	5.5	41	92	3	357	29	19	26	25	1.99
5726813--5727211	196	2.0	196	97	0	746	39	5	14	41	1.67
5730782--5730807	13	2.0	13	100	0	52	53	7	7	30	1.57
5732495--5732519	2	12.5	2	100	0	50	52	0	48	0	1.00
5733006--5733038	16	2.0	17	88	5	50	9	12	12	66	1.44
5734098--5734132	16	2.2	16	89	0	52	62	0	8	28	1.24
5736090--5736625	50	10.8	50	72	2	382	22	21	23	33	1.98
5735977--5736683	100	7.1	100	86	2	904	23	21	23	31	1.98
5735976--5736683	299	2.4	297	85	2	983	23	21	23	32	1.98
5737933--5737976	7	6.0	7	87	10	54	13	13	0	72	1.12
5737942--5737986	8	5.6	8	89	10	74	11	11	0	77	0.99
5738786--5738825	6	6.3	6	88	11	62	0	20	0	80	0.72
5738787--5738823	7	5.6	7	90	3	51	0	16	0	83	0.64
5738786--5738823	14	2.9	13	92	7	60	0	18	0	81	0.69
5738786--5738825	13	3.2	12	89	10	62	0	20	0	80	0.72
5742660--5742721	9	6.7	9	77	14	54	58	0	1	40	1.08
5742662--5742718	30	1.9	29	89	3	87	57	0	1	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5742697--5742771	27	2.7	27	77	6	71	54	4	6	34	1.45
5742752--5742786	16	2.2	16	89	0	52	62	0	8	28	1.24
5754573--5754606	17	1.9	18	94	5	61	14	44	29	11	1.81
5757432--5757495	25	2.5	25	82	5	65	26	26	17	29	1.97
5769247--5769280	18	1.9	17	88	5	50	26	5	2	64	1.30
5771191--5771263	34	2.1	35	97	2	139	10	23	15	50	1.75
5775127--5775170	23	1.9	23	90	0	70	29	13	9	47	1.74
5778903--5778933	16	2.0	15	93	6	53	80	0	0	19	0.71
5778903--5778951	21	2.3	22	85	3	64	73	6	0	20	1.04
5793779--5794200	88	4.8	88	79	2	389	34	17	19	28	1.95
5793779--5794200	44	9.5	44	76	6	316	34	17	19	28	1.95
5795749--5795773	12	2.1	12	100	0	50	24	0	0	76	0.80
5795960--5796017	28	2.1	28	96	0	107	20	15	6	56	1.62
5798357--5798390	16	2.1	17	88	5	52	26	0	0	73	0.83
5801328--5801442	46	2.5	47	75	12	114	23	21	20	33	1.97
5801556--5801599	23	1.9	23	90	9	72	27	11	13	47	1.77
5805682--5805748	34	1.9	34	88	8	100	32	7	11	47	1.68
5810152--5810283	60	2.2	59	87	1	183	41	9	25	22	1.85
5819368--5819414	17	2.8	17	79	20	62	36	2	6	55	1.37
5819904--5820030	61	2.1	61	88	4	186	29	14	9	46	1.76
5820371--5820412	16	2.6	16	92	0	66	42	7	2	47	1.43
5820386--5820447	23	2.7	23	82	2	72	48	1	1	48	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5821198--5821254	11	5.3	11	77	12	64	47	0	1	50	1.11
5821207--5821254	21	2.3	21	82	3	62	50	0	2	47	1.12
5821232--5821345	43	2.8	40	85	7	156	61	0	3	35	1.13
5821214--5821334	53	2.3	53	80	4	129	59	0	3	37	1.14
5827619--5827651	15	2.3	15	89	5	50	39	3	0	57	1.14
5833703--5833736	14	2.4	14	90	0	50	29	0	8	61	1.26
5840427--5840467	20	2.0	21	85	4	57	63	4	2	29	1.28
5855223--5855273	25	2.0	26	84	3	68	41	1	0	56	1.10
5855288--5855331	22	2.0	23	86	4	63	40	2	2	54	1.25
5856202--5856252	25	2.0	25	81	7	59	39	29	11	19	1.87
5858952--5858997	22	2.1	22	100	0	92	56	17	0	26	1.41
5859182--5859216	18	1.9	18	88	0	52	31	14	25	28	1.95
5861311--5861337	3	9.0	3	100	0	54	33	33	0	33	1.58
5864576--5864650	34	2.2	34	97	0	141	52	4	24	20	1.63
5865625--5865687	30	2.1	31	85	8	87	53	1	0	44	1.10
5865686--5865730	23	2.0	24	86	8	67	42	6	0	51	1.28
5866250--5866308	29	2.0	29	80	9	66	52	15	5	27	1.63
5875186--5875216	11	2.7	11	95	5	53	29	0	3	67	1.06
5878006--5878061	16	3.4	16	76	13	69	41	8	0	50	1.34
5878018--5878071	17	3.2	17	75	15	67	38	11	0	50	1.38
5878003--5878070	33	2.1	33	100	0	136	38	8	0	52	1.33
5881295--5881351	30	1.9	30	82	13	73	47	3	0	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5881529--5881578	26	1.9	26	88	8	75	38	22	2	38	1.65
5884725--5884787	27	2.2	29	80	16	85	46	11	22	20	1.82
5884735--5884789	27	2.0	27	96	0	101	40	12	25	21	1.89
5885810--5886013	106	1.9	106	92	0	345	31	17	19	31	1.94
5886415--5886450	18	1.9	19	88	5	56	66	2	5	25	1.27
5894560--5894612	16	3.3	16	91	0	88	37	3	33	24	1.74
5894801--5894846	18	2.6	17	93	6	74	56	0	2	41	1.11
5894816--5894999	41	4.6	41	65	22	95	52	4	2	40	1.33
5894835--5895017	59	3.0	61	70	12	189	51	4	2	42	1.34
5901801--5901837	17	2.2	17	86	13	51	67	0	0	32	0.91
5901801--5901831	15	2.0	16	93	6	55	64	0	0	35	0.94
5901920--5901969	23	2.1	24	85	10	68	46	2	2	50	1.24
5916407--5916630	68	3.0	69	79	17	261	35	7	11	46	1.67
5916466--5916665	82	2.4	83	90	3	307	34	6	9	50	1.60
5916475--5916665	83	2.3	82	91	2	303	35	6	9	48	1.62
5923937--5923993	28	2.0	28	100	0	114	22	17	10	49	1.77
5925180--5925232	21	2.3	24	81	18	69	35	0	3	60	1.15
5925180--5925231	20	2.4	22	84	12	63	34	0	3	61	1.14
5925771--5925818	24	2.0	24	87	0	69	37	6	4	52	1.46
5927071--5927101	3	10.0	3	93	6	53	67	0	0	32	0.91
5927502--5927541	20	2.0	20	90	0	62	30	10	10	50	1.69
5927487--5927553	34	1.9	35	90	3	109	34	8	10	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5936783--5936862	19	4.2	19	73	12	56	28	5	1	65	1.22
5936778--5936870	46	2.0	47	81	10	111	30	5	1	63	1.23
5936801--5936900	29	3.6	28	78	15	84	30	5	0	65	1.14
5937554--5937593	16	2.5	16	91	0	62	35	32	5	27	1.79
5938289--5938337	9	5.2	9	85	9	71	18	12	30	38	1.87
5938285--5938337	20	2.8	19	88	8	81	18	11	28	41	1.85
5938394--5938418	12	2.1	12	100	0	50	16	24	36	24	1.94
5938471--5938807	84	4.0	84	83	6	394	33	10	14	41	1.80
5939488--5939556	28	2.4	30	83	7	90	31	2	0	65	1.08
5940060--5940119	21	2.8	22	81	18	65	45	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126