genome.fa.s14.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  31  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8868257--8868329	19	3.8	19	70	10	67	34	2	0	63	1.09
8868246--8868362	11	11.4	11	70	21	60	36	2	0	60	1.10
8868235--8868310	30	2.5	30	91	2	125	34	2	0	63	1.09
8868246--8868350	39	2.6	39	88	7	149	35	2	0	61	1.11
8868324--8868363	21	1.9	21	94	0	71	35	2	0	62	1.09
8868315--8868362	12	4.3	12	72	17	50	37	2	0	60	1.09
8871190--8871232	21	2.1	20	95	4	77	51	4	6	37	1.50
8872463--8872503	11	3.7	11	80	0	55	19	14	9	56	1.66
8872541--8872598	30	1.9	30	92	0	98	29	5	15	50	1.66
8872724--8872754	11	2.8	11	90	0	53	67	0	0	32	0.91
8882895--8882970	36	2.1	35	84	13	102	52	5	1	40	1.32
8888690--8889459	385	2.0	385	99	0	1531	50	5	9	33	1.59
8891329--8891614	44	6.6	44	69	12	169	27	24	18	29	1.98
8891605--8892217	128	4.8	128	90	0	913	25	24	19	30	1.98
8893461--8893498	7	5.4	7	81	12	51	13	15	0	71	1.16
8894350--8894410	32	1.9	32	86	6	88	13	8	9	68	1.38
8899070--8899198	67	1.9	67	98	0	249	56	3	5	34	1.38
8899083--8899191	32	3.3	33	70	17	109	55	2	6	35	1.40
8902009--8902415	209	2.0	208	91	2	656	41	15	8	34	1.78
8906703--8906867	51	3.3	49	90	2	240	27	25	15	32	1.95
8914398--8914431	15	2.3	15	100	0	68	55	8	5	29	1.54
8921285--8921566	50	5.6	50	77	5	210	24	28	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8943896--8943976	33	2.6	31	86	5	101	41	1	18	38	1.58
8944152--8944187	18	2.0	18	100	0	72	27	0	33	38	1.57
8945869--8946298	212	2.0	211	94	1	754	40	16	9	33	1.81
8953233--8953292	19	3.1	19	87	2	84	78	8	1	11	1.03
8953244--8953285	14	3.1	14	89	3	59	80	9	0	9	0.89
8953236--8953292	20	2.9	20	86	2	71	78	8	1	10	1.02
8954955--8955454	87	5.7	87	92	0	775	30	23	21	24	1.99
8955745--8956210	142	3.3	142	91	0	736	32	18	20	28	1.96
8955988--8956237	44	5.5	44	68	16	118	31	17	21	29	1.96
8956276--8956825	50	11.0	50	73	6	414	31	23	20	24	1.98
8956272--8956834	100	5.6	99	89	2	743	31	23	20	24	1.98
8957823--8957851	14	2.1	14	100	0	58	13	0	0	86	0.58
8962426--8962459	16	2.1	16	88	5	50	8	0	14	76	1.01
8978485--8978578	45	2.1	45	89	0	143	30	23	20	25	1.98
8978575--8978770	51	3.9	50	81	4	241	30	28	17	23	1.97
8978582--8978766	101	1.8	101	91	3	309	30	28	17	23	1.97
8992418--8992457	19	2.0	20	85	4	55	65	15	5	15	1.44
8992418--8992457	20	2.0	20	85	9	55	65	15	5	15	1.44
9002620--9002648	8	3.6	8	100	0	58	24	0	0	75	0.80
9006762--9006819	29	2.0	29	100	0	116	37	13	6	41	1.72
9011207--9011240	17	2.0	17	94	0	59	58	14	11	14	1.63
9019669--9019742	34	2.2	34	85	4	96	31	18	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9020204--9020435	27	8.6	28	77	7	219	20	15	18	44	1.87
9020203--9020435	54	4.3	54	82	4	247	20	16	18	44	1.87
9020204--9020435	81	2.8	80	84	7	297	20	15	18	44	1.87
9021874--9021906	17	2.0	16	94	5	57	18	27	12	42	1.85
9023007--9023565	27	20.6	27	83	5	678	19	16	20	43	1.88
9035324--9035349	13	2.0	13	100	0	52	46	0	0	53	1.00
9035286--9035351	31	2.2	30	86	13	91	53	0	0	46	1.00
9048754--9049137	189	2.0	189	87	2	556	34	13	20	30	1.92
9053075--9053100	7	3.7	7	100	0	52	53	0	0	46	1.00
9055244--9055353	11	10.4	11	69	17	81	39	0	0	60	1.03
9055227--9055353	62	2.0	65	92	6	215	39	0	0	59	1.03
9055227--9055353	32	4.0	31	90	8	193	39	0	0	59	1.03
9055314--9055367	21	2.5	20	85	11	72	38	0	3	57	1.17
9058308--9058332	3	8.3	3	100	0	50	64	0	0	36	0.94
9061105--9061177	36	2.0	36	100	0	146	38	8	8	45	1.64
9062194--9062232	19	2.1	18	85	4	51	71	5	7	15	1.26
9080577--9080611	15	2.4	15	90	4	54	48	0	8	42	1.33
9087072--9087141	4	17.5	4	76	16	56	21	2	0	75	0.93
9087068--9087142	24	3.0	25	81	11	84	24	2	0	73	0.96
9087071--9087141	17	4.1	17	73	20	58	21	2	0	76	0.92
9087069--9087148	32	2.5	32	78	11	92	22	3	0	73	0.99
9087969--9088159	101	1.9	100	81	8	235	27	16	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9088147--9088196	24	2.2	21	78	21	57	76	2	0	22	0.89
9088154--9088191	10	3.7	10	83	16	51	71	2	0	26	1.00
9088160--9088207	20	2.4	20	85	0	60	77	2	2	18	0.97
9088147--9088207	27	2.4	24	75	19	61	77	1	1	19	0.95
9088700--9088734	15	2.4	15	90	4	54	48	0	8	42	1.33
9094017--9094055	5	7.8	5	100	0	78	38	0	0	61	0.96
9097469--9097532	13	4.9	13	74	12	60	29	6	25	39	1.80
9097762--9097809	19	2.6	18	77	9	51	52	0	2	45	1.12
9099587--9099760	71	2.4	73	78	9	187	54	12	8	25	1.64
9100183--9100230	18	2.7	18	96	0	87	39	12	12	35	1.81
9101245--9101278	15	2.3	15	94	0	59	44	0	5	50	1.26
9101125--9101554	132	3.3	132	95	1	765	36	8	6	48	1.60
9101374--9101410	15	2.5	15	100	0	74	43	0	5	51	1.24
9101509--9101541	15	2.2	15	100	0	66	42	0	6	51	1.26
9103499--9103602	25	4.2	25	92	0	172	47	26	23	2	1.66
9103489--9103527	19	2.1	19	95	0	69	51	23	25	0	1.49
9106177--9106469	90	3.3	90	78	2	295	35	13	23	27	1.93
9110214--9110309	34	2.8	34	90	0	147	46	14	5	33	1.67
9116494--9116546	18	3.0	17	91	5	79	39	1	1	56	1.21
9116694--9116799	44	2.5	41	79	16	126	35	30	3	30	1.75
9116707--9116799	44	2.1	46	91	4	154	37	29	4	29	1.76
9116781--9116833	16	3.3	16	87	10	81	24	35	3	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9118267--9118306	4	10.0	4	100	0	80	50	25	0	25	1.50
9120354--9120411	22	2.7	21	76	10	53	41	17	5	36	1.72
9120844--9121257	131	3.1	131	83	3	528	25	25	19	28	1.99
9121254--9121630	89	4.2	89	84	4	447	23	21	25	28	1.99
9121289--9121524	45	5.3	45	67	15	139	22	23	24	29	1.99
9121643--9122169	44	11.8	44	72	9	334	29	21	18	31	1.97
9121575--9122175	225	2.7	224	88	1	891	28	21	18	30	1.97
9127522--9127567	24	2.0	23	91	4	74	34	2	6	56	1.37
9132224--9132281	22	2.6	22	81	7	64	41	17	5	36	1.72
9132253--9132296	19	2.5	17	82	13	61	31	15	9	43	1.79
9134733--9134772	20	1.9	22	85	10	57	32	0	5	62	1.17
9134883--9134932	16	3.2	16	78	16	68	66	0	0	34	0.92
9134868--9134932	31	2.3	25	87	12	67	63	0	0	36	0.95
9134881--9134931	15	3.3	15	79	15	68	64	0	0	35	0.94
9139465--9139503	17	2.4	16	84	16	53	33	12	0	53	1.39
9140411--9140452	18	2.2	20	87	8	61	33	21	9	35	1.86
9147708--9147914	103	2.0	103	99	0	405	30	11	20	37	1.88
9149846--9149875	12	2.4	13	94	5	53	16	6	0	76	0.99
9149843--9149900	28	2.1	28	81	9	66	13	12	1	72	1.20
9150107--9150131	5	5.0	5	100	0	50	80	0	0	20	0.72
9150161--9150224	24	2.6	24	80	5	65	31	3	20	45	1.67
9152556--9152589	14	2.5	14	90	4	52	52	32	0	14	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9153445--9153490	24	1.9	24	86	8	67	34	15	10	39	1.82
9157830--9157900	11	6.5	11	76	14	67	36	2	0	60	1.11
9157839--9157941	30	3.4	30	77	9	93	35	2	0	61	1.11
9157863--9157941	20	4.0	20	71	17	74	36	2	0	60	1.10
9157823--9157926	42	2.5	41	90	7	167	33	2	0	63	1.09
9157903--9157948	20	2.2	20	88	3	65	36	2	0	60	1.09
9163267--9163327	21	2.8	21	92	5	95	42	1	29	26	1.65
9169191--9169215	13	1.9	13	100	0	50	60	0	0	40	0.97
9171368--9171412	22	2.0	22	100	0	90	46	8	22	22	1.79
9180772--9180995	104	2.2	104	93	1	378	17	19	31	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126