genome.fa.s14.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  53  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15429682--15429757	26	2.9	26	80	3	82	39	11	15	32	1.84
15434532--15434573	22	1.9	22	90	0	66	9	19	28	42	1.82
15434558--15434718	42	3.8	41	76	13	139	26	30	17	26	1.97
15435039--15435130	21	4.4	21	87	2	114	5	43	15	35	1.69
15435142--15435287	66	2.2	66	82	4	179	17	25	17	39	1.91
15445927--15445996	35	2.0	36	86	8	99	35	0	7	57	1.26
15446159--15446198	7	5.4	7	85	8	53	27	50	0	22	1.50
15446141--15446198	15	3.9	15	76	13	57	31	50	0	18	1.48
15446335--15446406	37	1.9	38	88	2	110	36	40	1	22	1.63
15448221--15448541	41	7.8	42	80	4	151	33	24	25	17	1.96
15448261--15448540	82	3.4	82	78	2	233	32	24	25	17	1.96
15448236--15448540	123	2.5	122	78	4	292	34	24	24	16	1.96
15448620--15448695	40	1.9	40	86	5	109	14	30	25	30	1.95
15460751--15460795	22	2.0	23	86	4	65	55	0	2	42	1.12
15460843--15460879	17	2.1	18	85	14	51	59	0	0	40	0.97
15462059--15462123	19	3.4	18	76	15	60	69	1	1	27	1.07
15470540--15470581	13	3.1	14	83	10	52	50	0	0	50	1.00
15470538--15470579	14	2.9	15	79	17	52	52	0	0	47	1.00
15477521--15477562	21	2.0	21	95	0	75	26	38	26	9	1.87
15478138--15478188	26	2.0	26	100	0	102	27	27	7	37	1.84
15482477--15482510	17	2.0	17	88	11	52	41	2	8	47	1.50
15482513--15482543	16	1.9	16	93	0	53	58	9	9	22	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15485845--15485892	26	1.9	25	84	16	64	45	0	2	52	1.12
15485971--15486181	66	3.4	63	69	21	192	41	3	6	48	1.44
15485933--15486225	120	2.4	120	94	3	502	42	2	4	49	1.38
15486058--15486109	15	3.6	15	80	12	56	44	0	1	53	1.11
15486187--15486228	15	2.7	16	82	14	52	45	0	2	52	1.13
15486178--15486219	15	2.9	15	82	10	52	47	0	0	52	1.00
15486162--15486478	157	2.0	157	96	0	589	47	4	3	44	1.40
15486331--15486365	18	2.0	17	88	5	52	45	0	0	54	0.99
15486163--15486401	75	3.1	75	64	18	191	46	3	3	46	1.35
15486602--15486637	16	2.2	16	95	0	63	38	27	0	33	1.57
15488319--15488351	16	2.1	16	94	0	57	33	0	36	30	1.58
15488298--15488338	21	2.0	21	95	0	73	26	0	39	34	1.57
15488330--15488424	45	2.1	44	88	1	136	34	5	27	32	1.79
15488586--15488620	18	2.0	17	88	5	52	54	0	0	45	0.99
15488544--15488616	27	2.7	27	76	8	76	52	2	0	45	1.15
15488505--15488776	144	1.9	147	94	3	487	46	3	2	47	1.34
15488730--15488764	18	2.0	17	88	5	52	54	0	0	45	0.99
15499851--15499935	43	2.0	43	86	4	118	11	5	14	68	1.38
15501086--15501119	5	6.6	5	96	3	59	0	58	41	0	0.98
15504757--15504802	21	2.2	21	84	7	58	26	2	21	50	1.60
15507053--15507313	40	6.5	40	94	0	459	30	20	21	27	1.98
15509619--15509715	40	2.4	40	98	0	185	29	21	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15541072--15541120	16	2.9	16	78	6	53	59	2	0	38	1.09
15543633--15543670	14	2.7	14	84	12	51	52	0	0	47	1.00
15543679--15543728	16	3.2	16	70	18	52	52	0	0	48	1.00
15544472--15544509	14	2.7	14	84	12	51	52	0	0	47	1.00
15544419--15544752	76	4.3	75	66	21	195	48	2	4	44	1.33
15544518--15544567	16	3.2	16	70	18	52	52	0	0	48	1.00
15544708--15544745	14	2.7	14	84	12	51	52	0	0	47	1.00
15544419--15544765	73	4.5	73	64	21	186	49	2	4	44	1.32
15544361--15544838	236	2.0	236	99	0	947	48	2	3	44	1.34
15544754--15544803	16	3.2	16	70	18	52	52	0	0	48	1.00
15545896--15545989	41	2.3	41	96	1	170	50	17	8	24	1.73
15549928--15549995	34	2.0	34	94	0	118	38	11	30	19	1.87
15550992--15551059	34	2.0	34	94	0	118	38	11	30	19	1.87
15552056--15552123	34	2.0	34	94	0	118	38	11	30	19	1.87
15554185--15554252	34	2.0	34	88	5	102	38	8	29	23	1.85
15555246--15555313	34	2.0	34	88	0	100	38	10	29	22	1.87
15556786--15556826	21	1.9	22	95	5	75	58	14	9	17	1.62
15556951--15556985	17	2.1	17	100	0	70	37	11	17	34	1.85
15561006--15561048	22	2.0	22	100	0	86	32	9	4	53	1.53
15563528--15563565	20	1.9	20	88	0	58	47	7	5	39	1.55
15563528--15563571	21	2.2	20	83	4	52	45	6	6	40	1.57
15566944--15567035	31	2.8	34	79	12	95	30	14	11	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15577568--15577646	27	2.8	27	73	7	68	18	21	18	40	1.92
15578860--15578930	29	2.5	29	77	8	83	45	22	15	16	1.85
15584589--15584772	26	7.1	26	73	6	149	22	16	26	34	1.95
15584602--15584728	51	2.5	52	83	3	159	22	15	25	37	1.93
15584602--15584772	77	2.2	78	82	4	202	22	15	25	35	1.94
15605512--15605636	62	2.0	62	100	0	250	34	9	14	41	1.78
15608260--15608286	14	1.9	14	100	0	54	29	18	14	37	1.91
15608426--15608471	6	7.5	6	92	2	56	0	60	0	39	0.97
15608426--15608467	19	2.2	19	86	0	57	0	61	0	38	0.96
15610371--15610431	29	2.1	28	81	3	68	22	16	18	42	1.89
15612289--15612328	20	2.0	20	95	0	71	45	12	10	32	1.75
15612279--15612343	34	1.9	33	82	14	80	44	9	9	36	1.68
15621185--15621349	69	2.4	69	82	6	217	33	18	24	23	1.96
15626630--15626685	28	2.0	28	92	0	94	32	21	12	33	1.91
15631253--15631278	13	2.0	13	100	0	52	69	0	15	15	1.20
15640506--15640556	25	2.0	25	85	7	68	21	17	21	39	1.93
15640512--15640595	25	3.4	25	73	4	71	23	15	20	40	1.90
15642410--15642440	14	2.1	15	94	5	55	64	0	0	35	0.94
15644276--15644308	17	1.9	17	88	11	50	30	21	0	48	1.50
15644490--15644533	21	2.2	20	83	4	52	34	27	0	38	1.57
15647708--15647753	24	1.9	24	86	8	67	34	8	4	52	1.52
15647996--15648074	28	2.8	29	79	9	99	30	10	2	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15655561--15655585	8	3.1	8	100	0	50	12	12	0	76	1.04
15659295--15659388	44	2.1	44	92	0	152	30	21	21	26	1.98
15659220--15659489	142	1.9	142	90	1	434	34	17	20	28	1.95
15664178--15664219	21	2.0	20	82	13	50	45	14	16	23	1.84
15674225--15674811	272	2.2	272	99	0	1156	26	17	19	36	1.94
15686279--15686520	123	2.0	123	94	0	430	35	20	18	25	1.95
15689992--15690057	22	2.9	22	69	18	55	46	0	1	51	1.10
15690014--15690063	18	2.6	19	77	22	52	46	0	2	52	1.12
15690084--15690114	15	2.0	16	93	6	55	61	0	0	38	0.96
15690248--15690311	30	2.1	30	82	2	74	31	14	4	50	1.63
15696341--15696380	20	2.0	20	95	4	73	40	5	0	55	1.22
15696338--15696386	19	2.6	18	87	9	71	42	6	2	48	1.39
15703782--15703978	32	6.3	32	79	6	197	39	18	18	23	1.93
15703795--15703949	61	2.5	60	81	7	175	37	18	20	24	1.94
15703795--15703976	93	2.0	93	83	2	231	38	18	19	24	1.93
15703987--15704038	26	2.0	26	84	0	68	40	21	23	15	1.91
15704152--15704209	24	2.4	24	91	0	89	46	20	8	24	1.78
15704164--15704261	24	4.1	24	82	0	106	43	20	8	27	1.80
15704279--15704631	27	13.5	27	74	9	212	23	20	19	36	1.95
15704353--15704385	16	2.1	16	94	0	57	24	18	12	45	1.83
15704299--15704429	70	1.9	70	83	3	174	25	19	17	38	1.93
15704279--15704466	97	1.9	97	82	4	236	26	19	17	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15704370--15704629	81	3.2	80	79	5	256	21	20	20	36	1.95
15704566--15704671	54	2.0	54	87	7	153	18	22	18	39	1.92
15704568--15704681	27	4.2	27	81	12	135	21	20	18	40	1.92
15710438--15710503	29	2.3	29	97	0	123	15	31	0	53	1.42
15711399--15711449	25	2.0	25	96	0	93	23	9	21	45	1.82
15719375--15719413	20	2.0	20	90	5	62	41	7	0	51	1.31
15721072--15721118	24	1.9	25	82	4	60	38	12	8	40	1.74
15721226--15721343	62	2.0	62	83	5	152	51	6	5	36	1.50
15721322--15721382	20	3.3	19	74	17	56	55	3	1	39	1.26
15721843--15721890	25	1.9	25	82	0	60	31	6	6	56	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126