genome.fa.s14.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  117  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36165279--36165313	17	2.1	17	88	0	52	22	37	25	14	1.92
36167082--36167137	30	1.9	28	82	13	69	62	12	12	12	1.55
36179335--36179637	40	7.6	40	89	3	380	27	28	20	24	1.99
36187070--36187217	40	3.7	40	96	0	260	22	27	20	30	1.98
36196464--36196498	17	2.1	17	89	10	54	20	8	0	71	1.11
36205277--36205451	87	2.0	87	100	0	350	36	16	17	30	1.91
36218451--36218491	17	2.3	19	80	16	52	63	2	2	31	1.20
36221788--36221927	27	5.2	27	85	0	174	45	21	17	15	1.86
36221788--36221927	54	2.6	54	87	1	192	45	21	17	15	1.86
36222083--36222171	26	3.4	26	87	1	124	13	22	24	39	1.90
36222282--36222368	28	3.0	28	81	6	102	27	25	21	25	2.00
36222282--36222365	30	2.9	30	85	3	109	28	26	21	23	1.99
36225008--36225106	30	3.4	29	87	2	137	24	28	24	23	2.00
36225741--36225775	13	2.7	13	87	12	54	34	17	11	37	1.85
36226773--36227134	84	4.4	84	89	2	536	22	17	24	35	1.95
36231721--36231755	13	2.7	13	90	0	61	34	14	8	42	1.76
36232766--36233123	42	8.6	41	76	8	332	22	15	25	36	1.94
36232766--36233123	84	4.3	84	88	1	499	22	15	25	36	1.94
36241962--36242011	18	2.8	18	85	8	66	0	42	0	58	0.98
36241964--36242024	5	12.4	5	76	10	63	0	40	1	57	1.08
36242691--36242835	27	5.4	27	86	4	204	42	20	20	15	1.89
36242861--36242935	26	2.9	26	83	0	105	13	22	24	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36243043--36243174	30	4.6	29	78	15	130	25	25	21	27	1.99
36243044--36243196	30	5.0	31	75	11	104	24	26	22	26	2.00
36247068--36247300	42	5.6	42	96	1	393	27	19	28	24	1.99
36255254--36255634	40	9.4	40	93	1	532	25	20	27	25	1.99
36260955--36261144	95	2.0	95	100	0	380	35	17	10	35	1.85
36268794--36268911	59	2.0	59	98	0	227	27	26	23	22	1.99
36268886--36268991	40	2.6	40	80	5	108	23	25	21	29	1.99
36269327--36269405	29	2.7	29	86	5	106	27	32	15	24	1.95
36269387--36270263	43	20.4	43	100	0	1754	27	35	14	23	1.93
36279729--36279954	39	5.7	39	89	5	196	26	21	27	23	1.99
36279729--36279991	40	6.6	39	87	7	313	26	21	26	24	1.99
36279729--36279991	79	3.3	79	84	8	306	26	21	26	24	1.99
36279758--36280024	79	3.4	78	82	10	251	28	20	26	23	1.99
36282066--36282644	289	2.0	287	90	2	910	31	13	15	39	1.86
36283114--36283226	50	2.3	50	79	0	127	28	23	26	22	1.99
36283500--36283538	20	2.0	20	90	10	62	56	5	23	15	1.59
36284282--36284425	50	2.9	50	80	2	146	22	28	21	27	1.99
36288429--36288524	28	3.5	28	83	7	115	29	19	25	26	1.99
36301707--36301753	23	2.0	24	83	8	60	34	19	4	42	1.70
36301901--36301944	23	1.9	22	82	17	54	36	25	0	38	1.56
36301992--36302082	45	2.0	45	93	0	155	32	23	16	27	1.96
36303969--36304020	27	2.0	26	88	7	79	26	17	17	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36304003--36304281	27	10.4	27	85	3	348	17	16	20	44	1.87
36306332--36306499	28	6.0	28	88	6	245	29	22	23	25	1.99
36306336--36306494	83	1.9	84	89	6	252	28	23	23	25	2.00
36306606--36306670	26	2.5	26	78	9	78	35	24	20	20	1.96
36306901--36307262	27	13.4	27	78	6	331	19	15	21	43	1.88
36306901--36307262	81	4.5	81	82	4	428	19	15	21	43	1.88
36308391--36308428	9	4.2	9	80	12	51	21	10	26	42	1.85
36308388--36308424	18	2.1	18	94	0	65	21	10	29	37	1.88
36308407--36308479	33	2.2	33	97	0	137	23	13	21	41	1.89
36310162--36310302	62	2.3	63	83	7	180	21	21	25	31	1.98
36311881--36311986	32	3.4	31	79	8	90	36	16	21	24	1.94
36311900--36311987	32	2.8	32	89	0	122	35	18	22	23	1.96
36311944--36312082	32	4.3	32	81	5	156	35	19	21	23	1.96
36311944--36312082	64	2.2	64	84	5	174	35	19	21	23	1.96
36312254--36312312	24	2.5	23	78	8	64	47	23	5	23	1.71
36312307--36312558	27	9.4	27	78	6	210	20	23	20	36	1.95
36312326--36312558	54	4.3	54	81	3	247	20	22	20	36	1.95
36312322--36312558	107	2.2	108	82	4	291	19	21	21	36	1.95
36313037--36313296	66	4.0	66	97	2	485	30	31	17	20	1.95
36322399--36322582	60	3.1	60	84	2	210	27	17	22	32	1.96
36323679--36323718	21	1.9	21	94	0	71	30	7	22	40	1.81
36324844--36324923	40	2.0	40	100	0	160	35	22	17	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36325033--36325252	77	2.9	77	98	0	422	25	19	17	37	1.93
36328652--36328767	57	2.0	57	96	0	214	31	25	5	37	1.78
36331822--36331878	30	1.9	30	100	0	114	38	7	17	36	1.77
36335171--36335201	4	7.8	4	100	0	62	51	22	0	25	1.48
36339472--36339664	27	7.4	27	75	10	168	34	18	21	25	1.96
36339496--36339637	75	1.9	74	85	1	194	34	19	22	23	1.96
36340020--36340102	33	2.5	33	84	3	105	28	15	22	32	1.95
36340021--36340112	33	2.8	34	79	9	100	30	17	22	29	1.97
36341221--36341351	40	3.3	40	87	0	181	38	24	15	22	1.92
36345010--36345272	40	6.6	40	88	3	316	24	20	28	26	1.99
36345049--36345307	80	3.3	80	84	3	247	25	20	28	25	1.99
36351974--36352035	21	2.7	23	72	25	58	27	19	8	45	1.78
36352128--36352167	14	2.9	14	100	0	80	62	22	0	15	1.32
36354428--36354504	38	2.0	38	94	0	136	37	7	18	36	1.80
36355763--36355802	20	2.1	19	86	13	55	10	35	5	50	1.58
36356947--36356989	18	2.4	18	88	0	59	25	9	25	39	1.85
36357126--36357323	63	3.1	63	81	2	175	25	20	20	32	1.97
36359330--36359513	60	3.1	59	82	2	208	26	17	23	31	1.97
36368422--36368496	30	2.5	30	89	2	107	37	9	17	36	1.82
36376197--36376329	18	7.6	18	71	20	77	65	1	19	13	1.34
36376221--36376285	12	5.2	12	71	23	53	66	1	20	12	1.32
36378242--36378272	16	1.9	16	100	0	62	12	6	25	54	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36381879--36381940	21	2.7	23	72	25	58	29	19	8	43	1.79
36382276--36382391	53	2.2	53	92	0	187	31	15	18	33	1.93
36384098--36384143	18	2.6	18	79	10	58	8	17	4	69	1.31
36384031--36384139	57	1.9	55	84	14	143	11	21	2	65	1.37
36384927--36384986	21	2.6	23	70	24	54	30	21	8	40	1.83
36388399--36388439	18	2.3	18	95	0	73	29	9	19	41	1.83
36388425--36388496	33	2.2	33	92	0	117	26	13	18	41	1.87
36388662--36388811	63	2.4	63	85	2	203	25	20	23	31	1.98
36394437--36394487	24	2.2	24	82	3	59	50	5	7	35	1.55
36398050--36398132	42	2.0	42	87	0	121	25	10	30	33	1.90
36410890--36411067	27	6.6	27	84	3	205	29	28	15	26	1.96
36410911--36411066	82	1.9	81	88	3	233	29	28	15	26	1.96
36421412--36421469	20	2.9	20	65	0	53	12	32	20	34	1.90
36421409--36421497	40	2.2	39	86	7	117	13	31	23	31	1.93
36421481--36421528	20	2.5	20	80	10	55	14	29	20	35	1.93
36422590--36422631	18	2.3	18	80	8	50	40	4	9	45	1.58
36427112--36427141	12	2.5	12	94	0	51	23	40	30	6	1.80
36430153--36430207	24	2.3	24	80	0	74	29	23	3	43	1.71
36431887--36432065	50	3.6	50	84	3	216	21	28	22	27	1.99
36434028--36434089	27	2.2	28	94	2	108	38	38	14	8	1.76
36435744--36435784	20	2.0	21	85	9	57	29	21	4	43	1.73
36435852--36436041	51	3.7	51	77	4	170	31	27	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36439096--36439316	85	2.6	85	99	0	433	37	9	26	26	1.86
36441610--36442351	47	15.6	47	91	2	1142	33	8	28	29	1.87
36441610--36442351	96	7.8	95	94	2	1206	33	8	28	29	1.87
36441610--36442351	143	5.2	141	91	2	1160	33	8	28	29	1.87
36442105--36442227	22	5.3	22	63	18	70	33	9	30	26	1.89
36442470--36442571	37	2.8	37	93	0	168	25	18	29	26	1.98
36448106--36448292	50	3.7	51	80	5	193	30	27	15	26	1.96
36453220--36453255	18	1.9	19	94	5	65	8	27	2	61	1.39
36457835--36458077	51	4.8	50	81	3	281	25	17	26	29	1.98
36457835--36458108	101	2.7	101	85	4	347	27	16	26	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126