genome.fa.s14.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  99  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30189476--30189532	23	2.6	21	78	15	62	73	0	22	3	0.98
30190375--30190423	22	2.2	23	88	3	73	77	2	10	10	1.07
30191728--30192075	100	3.5	99	83	3	457	33	22	18	25	1.97
30191710--30192068	50	7.2	49	70	4	216	32	22	19	25	1.97
30191988--30192415	85	5.0	85	94	0	667	31	26	17	25	1.97
30191988--30192515	170	3.0	170	89	4	750	32	25	17	25	1.97
30192376--30192558	50	3.7	50	71	8	156	34	24	16	25	1.95
30192328--30192634	100	3.1	100	85	0	364	34	23	18	24	1.96
30194306--30194343	19	2.0	19	94	0	67	42	18	0	39	1.50
30200063--30200162	43	2.3	43	96	0	182	26	10	21	43	1.83
30200327--30200403	20	3.8	20	73	13	86	58	3	3	33	1.35
30204797--30205026	50	4.6	50	85	2	277	20	28	23	27	1.99
30213721--30213758	11	3.5	11	92	0	58	23	2	21	52	1.59
30239402--30239699	147	2.0	148	91	0	481	31	13	17	36	1.89
30242080--30242111	16	2.0	16	93	0	55	59	21	0	18	1.38
30246626--30246692	14	4.8	14	79	18	68	73	7	19	0	1.07
30246626--30246692	26	2.4	27	82	12	82	73	7	19	0	1.07
30247763--30247824	24	2.5	26	74	15	67	69	1	12	16	1.27
30250024--30250271	96	2.6	95	85	3	309	35	2	17	43	1.64
30250820--30250865	11	4.2	11	78	18	51	43	0	32	23	1.54
30250826--30250868	10	4.0	10	82	14	50	46	0	30	23	1.52
30252913--30252962	25	2.0	25	92	0	82	4	36	4	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30255545--30255583	14	2.8	14	84	0	51	41	17	2	38	1.64
30256794--30257009	32	6.8	32	76	11	210	41	15	11	31	1.82
30256805--30257009	64	3.2	64	91	0	338	40	15	11	32	1.83
30256805--30257008	96	2.1	96	81	3	241	41	15	11	31	1.83
30257032--30257116	32	2.7	32	75	1	100	47	15	9	28	1.76
30259307--30259357	23	2.2	23	93	6	86	15	17	31	35	1.92
30259343--30259403	22	2.7	22	82	2	68	14	21	22	40	1.90
30259314--30259403	23	4.0	23	80	1	74	16	18	25	38	1.92
30260515--30260543	15	1.9	15	100	0	58	72	6	13	6	1.26
30265272--30265315	19	2.3	19	84	4	61	34	6	11	47	1.66
30270470--30270639	86	2.0	86	92	0	286	34	18	22	25	1.96
30273488--30273556	27	2.6	27	77	11	70	47	11	13	27	1.76
30278137--30278504	184	2.0	184	95	0	664	17	23	20	38	1.93
30280365--30280444	27	2.9	28	80	14	87	50	8	12	28	1.70
30281994--30282476	89	5.4	89	83	3	496	35	16	18	28	1.93
30281994--30282564	44	12.9	44	78	5	465	34	16	19	28	1.94
30281994--30282475	178	2.7	179	83	2	580	35	16	18	29	1.93
30281994--30282564	89	6.5	85	80	5	406	34	16	19	28	1.94
30282231--30282608	132	2.9	131	81	6	320	33	16	23	26	1.96
30284024--30284152	66	2.0	66	90	1	206	27	6	3	62	1.36
30292224--30292287	31	2.1	31	93	0	110	32	17	20	29	1.95
30293852--30293897	6	7.8	6	79	13	51	19	2	0	78	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30312645--30312722	31	2.5	31	83	6	97	20	11	23	44	1.84
30313704--30313767	22	2.9	22	95	0	119	29	7	12	50	1.68
30315177--30315234	26	2.2	25	87	9	80	67	0	5	27	1.12
30315176--30315234	28	2.2	26	87	6	82	67	0	5	27	1.11
30315409--30315735	102	3.0	101	67	21	261	35	3	17	43	1.65
30315725--30315768	6	7.2	6	79	5	52	18	2	43	36	1.63
30315874--30315968	35	2.7	35	91	4	140	25	31	32	10	1.90
30315893--30315968	35	2.2	35	100	0	152	23	32	31	11	1.91
30316468--30316512	17	2.6	18	89	7	74	44	4	0	51	1.21
30319419--30319467	19	2.6	19	93	0	89	40	0	22	36	1.54
30321780--30321880	27	3.8	26	81	3	87	19	26	15	37	1.92
30321794--30321880	27	3.3	27	83	1	113	20	27	17	34	1.95
30321886--30322030	57	2.5	57	86	2	202	25	23	12	38	1.90
30323402--30323438	9	4.1	9	92	0	65	45	13	10	29	1.77
30323653--30323711	30	2.0	30	86	6	84	20	38	0	40	1.53
30324362--30324387	5	5.2	5	100	0	52	23	19	19	38	1.93
30324477--30324502	5	5.2	5	100	0	52	19	19	19	42	1.90
30330562--30330600	21	2.0	21	85	10	55	20	0	2	76	0.90
30338900--30338952	24	2.2	24	83	3	63	41	13	13	32	1.82
30338966--30339016	26	1.9	27	84	11	70	56	11	11	19	1.65
30339445--30339479	18	1.9	18	88	0	52	11	40	25	22	1.88
30340780--30340804	6	4.2	6	100	0	50	52	16	0	32	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30353272--30353311	19	2.2	19	86	4	55	10	0	12	77	0.99
30353258--30353325	31	2.3	29	78	14	84	14	0	14	70	1.17
30356825--30357046	37	6.0	37	83	5	245	18	13	29	38	1.89
30356825--30357023	74	2.7	74	85	0	272	17	14	28	39	1.88
30356825--30357024	111	1.8	111	90	4	323	17	14	28	40	1.88
30356824--30357058	111	2.1	112	85	7	318	17	12	30	39	1.87
30359541--30359597	22	2.6	22	82	0	69	36	24	14	24	1.92
30370692--30370903	102	2.1	103	95	0	381	37	19	5	37	1.76
30377719--30377749	16	1.9	16	100	0	62	45	0	32	22	1.53
30377999--30378059	30	2.0	31	93	3	106	37	0	42	19	1.52
30381395--30381465	23	3.1	23	83	0	106	21	22	26	29	1.99
30386929--30387058	64	2.0	64	93	0	224	41	15	15	27	1.87
30398376--30398420	22	2.0	22	100	0	90	24	8	26	40	1.84
30398456--30398520	26	2.7	23	76	17	69	56	3	1	38	1.24
30399445--30399591	4	36.8	4	100	0	294	25	24	0	50	1.50
30401771--30401915	41	3.5	41	84	1	175	21	26	18	33	1.96
30401795--30401858	21	3.1	21	68	4	67	17	23	20	39	1.92
30401845--30401930	41	2.1	41	82	4	102	24	27	16	31	1.96
30403374--30403472	42	2.4	42	84	6	121	30	27	21	21	1.98
30407128--30407173	15	2.9	15	81	9	56	73	2	21	2	1.04
30407992--30408328	85	4.0	84	83	4	394	31	19	15	33	1.94
30409955--30410171	119	1.8	119	81	0	272	26	25	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30414336--30414368	15	2.1	16	94	5	59	42	15	0	42	1.46
30422517--30422541	10	2.5	10	100	0	50	84	0	16	0	0.63
30422907--30422949	14	2.9	15	76	16	54	34	2	11	51	1.51
30423105--30423260	41	3.8	41	85	3	181	18	21	26	33	1.96
30423105--30423259	81	1.9	81	83	0	202	18	21	26	33	1.96
30426272--30426310	19	2.1	19	85	0	51	43	0	2	53	1.14
30426812--30426849	20	1.9	19	89	5	58	57	2	2	36	1.26
30426848--30426920	30	2.7	27	78	17	80	58	0	2	38	1.12
30431156--30431181	9	2.9	9	100	0	52	23	11	11	53	1.69
30435874--30435923	22	2.3	22	78	0	64	28	30	16	26	1.96
30443718--30443765	18	2.8	16	74	20	51	47	2	0	50	1.12
30443778--30443806	12	2.3	13	94	5	51	55	0	6	37	1.27
30444026--30444080	9	6.1	9	77	8	58	45	1	0	52	1.11
30445292--30445354	31	2.0	31	81	6	74	49	14	1	34	1.53
30447608--30447650	14	3.1	14	93	3	70	30	0	2	67	1.03
30451580--30451627	20	2.4	20	96	0	87	29	20	16	33	1.95
30454454--30454549	26	3.9	25	75	13	83	56	10	5	28	1.54
30455603--30455954	44	7.8	44	74	10	221	29	20	19	30	1.97
30455500--30455954	227	2.0	227	90	1	725	29	20	18	31	1.96
30456073--30456186	51	2.2	51	85	0	156	29	23	14	32	1.94
30455971--30456691	123	5.6	123	70	12	489	28	24	16	30	1.96
30456110--30456273	87	1.9	87	83	0	211	31	22	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30456309--30456347	21	1.9	20	94	5	69	17	28	12	41	1.87
30456313--30456356	21	2.1	21	82	0	52	20	27	9	43	1.82
30455966--30456702	261	2.8	261	86	0	1060	28	24	16	30	1.96
30456327--30456701	138	2.8	139	75	10	331	27	24	17	31	1.97
30457983--30458014	15	2.1	15	94	0	55	0	21	0	78	0.76
30462797--30462860	23	2.8	21	75	15	56	68	3	1	26	1.13
30465076--30465226	49	3.1	48	78	8	144	18	13	33	35	1.90
30466816--30466871	24	2.2	26	84	9	80	62	5	3	28	1.34
30471092--30471125	16	2.1	16	100	0	68	44	23	14	17	1.86
30485926--30486059	68	2.0	68	82	2	162	42	2	3	50	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126