genome.fa.s14.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  56  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16386500--16386575	39	1.9	39	86	2	107	25	25	18	31	1.97
16386494--16386617	40	3.1	39	77	3	131	20	20	19	39	1.93
16388138--16388515	27	14.0	27	84	1	391	43	21	16	19	1.88
16388140--16388516	54	7.0	54	83	2	454	43	20	16	19	1.88
16388138--16388515	81	4.7	81	85	2	454	43	21	16	19	1.88
16395595--16395664	36	1.9	36	91	0	113	45	15	20	18	1.85
16397375--16397406	11	2.6	13	85	14	50	75	0	0	25	0.81
16404268--16404305	16	2.3	17	81	9	51	57	5	0	36	1.21
16406471--16406513	22	1.9	23	85	4	61	46	2	6	44	1.43
16406709--16406821	57	2.0	57	94	0	199	46	9	5	38	1.59
16407238--16407315	33	2.4	32	85	10	106	38	0	2	58	1.12
16407259--16407330	18	4.2	18	77	10	87	41	0	1	56	1.07
16407400--16407500	23	4.5	21	84	9	87	43	0	1	54	1.11
16407416--16407500	23	3.7	23	90	4	127	45	0	2	51	1.13
16407399--16407502	22	4.7	22	83	9	122	42	0	1	55	1.10
16407486--16407521	16	2.2	16	100	0	72	36	0	0	63	0.94
16407580--16407625	11	4.2	10	89	10	56	15	2	8	73	1.16
16407881--16407924	19	2.4	19	92	3	72	52	0	4	43	1.22
16412099--16412135	14	2.6	14	100	0	74	21	0	13	64	1.27
16415422--16415691	145	1.9	145	92	0	459	39	22	7	30	1.82
16415870--16415948	21	3.7	22	83	6	85	59	2	0	37	1.11
16416029--16416068	17	2.3	18	82	8	55	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16415995--16416099	21	4.7	21	79	15	104	56	0	0	41	1.12
16416116--16416153	13	3.1	13	85	11	53	73	10	0	15	1.09
16426375--16426468	47	2.0	47	100	0	188	48	6	6	38	1.54
16426670--16426700	16	1.9	16	93	0	53	16	0	6	77	0.97
16428244--16428314	21	3.4	21	73	13	74	49	0	1	49	1.09
16428262--16428326	21	3.1	22	74	14	66	47	0	0	52	1.00
16428435--16428471	16	2.3	17	81	13	51	59	0	2	37	1.12
16428613--16428674	29	2.1	30	85	14	85	27	12	6	53	1.63
16428624--16428681	30	2.0	29	83	10	73	27	15	6	50	1.70
16433470--16433573	55	1.9	55	93	0	181	25	18	21	35	1.95
16439112--16439150	20	1.9	21	89	5	62	43	2	7	46	1.46
16447207--16447272	32	2.1	32	100	0	132	50	12	15	22	1.77
16453410--16453484	27	2.7	29	81	8	75	38	1	1	58	1.15
16453533--16453593	24	2.4	25	83	5	70	31	1	1	65	1.12
16453625--16453666	20	2.1	20	86	0	57	23	2	2	71	1.10
16453647--16453685	16	2.5	15	81	18	53	30	0	2	66	1.05
16459398--16459445	20	2.5	19	80	12	53	39	6	6	47	1.54
16459715--16459802	29	3.0	30	73	9	108	40	4	18	36	1.71
16464211--16464461	68	3.7	68	80	0	277	35	18	19	27	1.95
16464208--16464453	136	1.8	136	84	1	332	36	18	18	26	1.94
16472463--16472631	68	2.5	68	83	1	214	33	17	20	28	1.96
16475714--16475827	42	2.7	43	72	11	119	32	26	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16476579--16476604	10	2.6	10	100	0	52	61	19	7	11	1.53
16478443--16478488	19	2.4	19	89	7	67	43	4	10	41	1.59
16479115--16479170	18	3.2	16	76	14	58	12	3	8	75	1.17
16479102--16479170	34	2.0	36	83	11	90	14	4	11	69	1.33
16482232--16482294	31	2.1	29	82	5	72	39	12	3	44	1.59
16482887--16482913	11	2.5	11	100	0	54	44	0	33	22	1.53
16483429--16483479	8	6.0	8	78	17	50	25	1	0	72	0.95
16490298--16490358	29	2.1	30	84	3	79	27	6	16	49	1.70
16496057--16496153	40	2.4	42	76	10	101	22	31	29	15	1.95
16496313--16496348	11	3.2	11	96	4	63	19	36	0	44	1.51
16496312--16496364	22	2.4	22	82	17	65	20	33	0	45	1.52
16496349--16496382	17	1.9	17	88	5	50	32	26	0	41	1.56
16498234--16498273	18	2.2	18	90	0	62	20	30	5	45	1.72
16498845--16499819	21	45.2	21	83	7	1039	46	28	0	24	1.56
16498826--16498923	21	4.4	24	88	6	79	45	31	0	22	1.52
16498906--16498990	27	3.3	27	76	17	90	47	28	0	24	1.53
16499049--16499102	27	2.0	27	92	0	90	44	31	0	24	1.54
16499494--16499553	27	2.2	28	87	3	86	43	31	0	25	1.55
16499827--16500097	114	2.4	114	98	0	515	39	11	8	40	1.72
16503101--16503613	125	4.1	125	90	0	805	32	21	16	29	1.95
16503101--16503613	249	2.1	249	90	0	812	32	21	16	29	1.95
16503654--16503696	15	2.7	16	75	10	52	55	27	0	16	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16504428--16504458	15	2.0	16	93	6	55	83	0	12	3	0.75
16515556--16515606	19	2.6	19	81	9	59	31	0	5	62	1.19
16515564--16515607	10	4.5	10	81	13	56	29	0	6	63	1.20
16522857--16522918	26	2.4	26	91	0	97	38	12	12	35	1.82
16526514--16526547	18	1.9	18	94	5	61	32	0	14	52	1.42
16534529--16534662	67	2.0	67	100	0	268	29	23	14	31	1.95
16545044--16545080	18	2.0	19	89	5	58	45	2	5	45	1.40
16558942--16558967	13	2.0	13	100	0	52	23	30	30	15	1.95
16559704--16559748	22	2.0	22	87	8	65	35	20	31	13	1.91
16562514--16562563	26	1.9	26	100	0	100	62	12	8	18	1.53
16566603--16566655	26	2.0	26	96	0	97	45	9	9	35	1.69
16577643--16577820	27	6.6	27	84	3	205	29	28	15	26	1.96
16577664--16577819	82	1.9	81	88	3	233	29	28	15	26	1.96
16585833--16586010	27	6.6	27	84	3	205	29	28	15	26	1.96
16585854--16586009	82	1.9	81	88	3	233	29	28	15	26	1.96
16587895--16587997	35	3.0	35	80	8	104	31	28	22	18	1.97
16593059--16593084	12	2.2	12	100	0	52	23	7	15	53	1.67
16595797--16595863	33	2.1	31	89	8	100	28	5	13	52	1.64
16598360--16598390	14	2.2	14	94	0	53	38	9	6	45	1.63
16598802--16598868	24	2.8	25	75	11	68	25	11	19	43	1.85
16598906--16598966	27	2.2	28	85	8	81	27	32	8	31	1.86
16601159--16601193	18	1.9	18	94	0	61	42	5	40	11	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16607199--16607247	24	2.0	25	84	4	64	53	6	18	22	1.66
16618712--16618742	10	3.1	10	95	0	53	45	0	9	45	1.36
16623043--16623106	29	2.3	27	78	10	67	51	7	0	40	1.31
16623396--16623857	244	1.9	245	86	8	657	41	8	16	33	1.80
16630821--16630851	16	1.9	16	93	0	53	41	22	12	22	1.88
16633048--16633328	90	3.1	90	94	0	501	44	10	5	39	1.61
16639391--16639458	34	2.0	34	83	8	86	22	4	4	69	1.25
16639410--16639465	28	2.0	28	86	10	78	21	3	1	73	1.08
16639457--16639513	27	2.1	27	83	0	69	42	3	3	50	1.36
16639800--16639838	9	4.6	8	84	9	51	15	0	2	82	0.79
16640154--16640350	98	2.0	98	93	0	340	28	10	23	37	1.88
16652068--16652252	44	4.2	44	64	13	128	29	20	24	25	1.99
16651706--16653248	132	11.8	132	92	0	2349	30	20	25	23	1.98
16653508--16653552	17	2.6	17	79	6	56	35	33	20	11	1.88
16654656--16654724	34	2.0	34	81	10	79	21	4	4	69	1.24
16654656--16654729	30	2.3	33	82	15	86	20	4	4	71	1.19
16655420--16655616	98	2.0	98	90	0	313	30	10	23	36	1.88
16656936--16656982	22	2.1	22	100	0	94	25	34	0	40	1.56
16657032--16657095	29	2.1	32	85	8	89	32	3	0	64	1.10
16657032--16657095	30	2.2	29	82	2	74	32	3	0	64	1.10
16658175--16658199	7	3.6	7	100	0	50	28	0	12	60	1.32
16658851--16658885	18	1.9	18	88	0	52	25	34	8	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16659144--16659199	24	2.3	24	90	0	94	44	32	21	1	1.63
16659436--16660162	28	25.4	28	87	5	974	49	23	0	26	1.52
16659436--16660162	57	12.7	56	86	5	910	49	23	0	26	1.52
16659436--16660162	85	8.5	84	88	3	970	49	23	0	26	1.52
16660160--16660216	26	2.2	26	96	0	105	26	8	7	57	1.54
16660312--16660336	10	2.5	10	100	0	50	44	8	0	48	1.32
16664393--16664417	10	2.5	10	100	0	50	8	0	0	92	0.40
16668897--16668933	13	2.8	13	91	0	56	43	40	0	16	1.48
16669081--16669133	9	5.8	9	74	12	54	22	9	26	41	1.84
16676927--16676984	27	2.1	27	87	6	80	15	6	1	75	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126