genome.fa.s14.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  54  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15725901--15725938	15	2.5	15	95	0	67	21	0	5	73	1.02
15725940--15725965	13	2.0	13	100	0	52	53	0	0	46	1.00
15725944--15725978	15	2.4	14	86	9	52	60	0	0	40	0.97
15725970--15726000	11	2.9	11	95	4	55	48	0	0	51	1.00
15729911--15729981	20	3.7	19	75	17	67	63	0	2	33	1.09
15729919--15729972	10	5.8	9	77	14	56	68	0	3	27	1.06
15730183--15730240	26	2.2	26	84	6	71	32	3	3	60	1.30
15730259--15730300	19	2.2	20	80	16	54	40	0	0	59	0.97
15730808--15730857	21	2.4	21	86	0	64	46	4	20	30	1.69
15730821--15730862	21	2.0	21	90	0	66	47	4	16	30	1.67
15734502--15734540	18	2.2	18	86	9	53	41	23	10	25	1.86
15738484--15739005	263	2.0	261	91	1	839	31	23	16	28	1.96
15754497--15754684	97	1.9	97	94	0	331	32	15	18	32	1.93
15754656--15754879	41	5.5	41	93	0	358	28	23	22	25	1.99
15754657--15754911	123	2.1	123	84	1	332	28	22	22	26	1.99
15754669--15754924	82	3.1	82	88	1	280	27	22	23	26	2.00
15762897--15763083	41	4.6	41	88	0	266	27	21	24	26	1.99
15763048--15763136	41	2.2	41	81	0	106	30	19	24	25	1.98
15762897--15763124	123	1.9	123	80	3	271	28	21	23	25	1.99
15767915--15768047	37	3.6	37	76	8	144	31	14	19	34	1.92
15767917--15768074	74	2.1	74	91	0	253	32	12	18	36	1.89
15772816--15772908	46	2.0	46	100	0	186	41	15	10	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15775893--15775931	19	2.1	19	85	9	53	33	7	10	48	1.66
15782914--15782942	6	5.0	6	91	8	51	0	31	0	68	0.89
15789296--15789328	17	1.9	17	93	0	57	57	9	12	21	1.62
15789754--15789792	18	2.2	18	85	0	51	20	35	5	38	1.75
15801196--15801249	27	2.0	28	81	3	65	37	14	29	18	1.91
15801897--15801935	18	2.1	18	85	9	51	33	5	5	56	1.43
15809180--15809321	70	2.0	70	93	0	239	35	17	18	28	1.94
15810901--15810943	19	2.3	19	84	8	52	18	6	2	72	1.19
15810935--15810972	11	3.3	11	86	13	58	31	2	0	65	1.06
15810932--15810970	13	3.2	13	85	14	64	33	5	0	61	1.18
15810903--15810972	6	11.5	6	82	11	63	24	5	1	68	1.19
15814066--15814230	50	3.3	50	83	5	208	26	24	29	20	1.99
15814500--15814538	12	3.2	12	85	0	51	51	5	23	20	1.67
15821622--15821736	25	4.6	25	84	2	135	36	21	16	25	1.94
15821622--15821753	25	5.3	25	82	3	133	36	19	17	26	1.94
15823731--15823775	19	2.4	20	82	14	60	37	0	4	57	1.19
15823735--15823774	18	2.2	18	86	8	55	37	0	2	60	1.11
15825119--15825165	17	2.8	17	90	9	71	29	10	10	48	1.71
15825228--15825257	15	2.0	15	93	0	51	30	26	13	30	1.94
15825249--15825348	34	2.9	34	86	0	137	30	21	25	24	1.99
15828923--15829113	43	4.4	43	83	0	265	30	32	17	18	1.95
15829118--15829217	42	2.3	43	79	1	112	39	28	16	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15830451--15830475	12	2.1	12	100	0	50	48	8	8	36	1.62
15831106--15831145	15	2.9	13	82	13	53	47	2	2	47	1.29
15834822--15835080	133	2.0	132	85	5	353	40	29	2	27	1.70
15835099--15835131	15	2.3	15	89	5	50	36	30	0	33	1.58
15835536--15835886	41	8.7	41	90	2	557	29	26	21	22	1.99
15835536--15835886	81	4.3	82	92	1	557	29	26	21	22	1.99
15835536--15835886	122	2.9	123	91	2	566	29	26	21	22	1.99
15840099--15840130	16	2.0	16	93	0	55	37	3	3	56	1.31
15841454--15841510	18	3.2	18	92	0	96	26	24	17	31	1.97
15849338--15849366	12	2.5	12	94	5	51	6	13	0	79	0.93
15855527--15855648	44	2.8	44	83	2	147	28	25	18	27	1.98
15855758--15855866	44	2.5	44	80	3	112	31	24	18	25	1.98
15855526--15855921	218	1.8	218	88	1	614	26	26	19	27	1.99
15857007--15857148	58	2.4	58	98	0	275	14	28	21	35	1.93
15869871--15869900	14	2.1	14	100	0	60	60	13	13	13	1.60
15874754--15874815	30	2.1	30	81	0	70	16	30	6	46	1.72
15877982--15878033	24	2.2	24	85	0	68	53	9	3	32	1.51
15884176--15884205	11	2.6	11	94	5	51	36	3	0	60	1.14
15894173--15894243	19	3.8	19	76	10	74	67	4	1	26	1.17
15895105--15895334	88	2.6	91	83	4	258	39	18	10	31	1.85
15895434--15895510	28	2.8	28	74	5	77	67	1	1	29	1.07
15895486--15895597	8	13.2	8	69	19	52	68	2	3	25	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15895487--15895598	9	11.9	9	69	17	59	68	2	3	25	1.18
15895459--15895540	36	2.2	38	82	10	107	64	0	1	34	1.01
15895514--15895559	20	2.3	20	84	0	56	69	4	4	21	1.24
15895525--15895587	10	6.4	10	74	17	60	69	4	3	22	1.21
15895525--15895587	30	2.1	29	91	2	99	69	4	3	22	1.21
15895526--15895598	19	3.8	19	80	5	76	68	4	4	23	1.24
15897531--15897602	19	3.7	19	73	12	65	27	2	4	65	1.25
15897472--15897572	29	3.5	28	75	10	96	31	6	2	58	1.40
15897648--15897686	9	4.2	9	83	6	51	30	2	0	66	1.05
15897633--15897686	18	2.8	19	80	8	56	33	1	0	64	1.04
15900474--15900548	39	1.9	39	81	10	91	40	21	20	18	1.92
15900421--15900839	114	3.7	113	91	2	651	37	18	20	23	1.94
15901588--15901640	7	7.4	7	77	12	54	18	0	28	52	1.46
15901554--15901640	21	4.1	20	76	16	86	17	0	29	52	1.44
15901730--15901769	21	1.9	21	89	0	62	22	0	30	47	1.52
15901711--15901762	14	3.7	14	73	0	59	17	0	34	48	1.48
15902139--15902176	20	1.9	20	94	0	67	34	0	7	57	1.28
15902799--15902827	15	1.9	15	100	0	58	37	0	13	48	1.43
15902781--15902850	16	3.9	16	69	25	50	41	0	10	48	1.36
15902823--15902873	25	2.1	24	85	3	66	47	0	5	47	1.26
15904678--15904729	21	2.6	19	88	8	77	48	15	0	36	1.45
15905033--15905100	21	2.9	23	78	14	77	42	26	2	27	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15905055--15905246	9	22.9	9	69	14	115	45	22	3	28	1.68
15905055--15905192	34	4.1	34	72	10	122	47	22	1	28	1.60
15905086--15905151	25	2.6	25	85	0	78	45	22	3	28	1.67
15905062--15905242	16	10.9	16	70	13	82	45	22	3	28	1.68
15905143--15905191	25	2.0	25	87	0	71	48	18	0	32	1.48
15905349--15905515	9	19.2	9	64	21	63	46	19	1	32	1.60
15911309--15911451	43	3.3	43	82	6	166	28	16	25	29	1.96
15911375--15911616	42	5.8	41	75	5	126	23	18	25	31	1.97
15911375--15911616	84	2.9	84	75	3	202	23	18	25	31	1.97
15911504--15911616	41	2.7	42	89	4	167	24	18	21	35	1.96
15913562--15913599	20	1.9	21	84	10	53	44	5	7	42	1.56
15913963--15913992	10	3.0	10	90	0	51	30	23	0	46	1.52
15915368--15915436	20	3.5	20	82	4	68	33	7	11	47	1.67
15921113--15921159	21	2.2	21	88	0	76	40	8	14	36	1.77
15922358--15922396	9	4.4	9	83	6	53	53	2	7	35	1.43
15922352--15922387	17	2.1	17	94	0	63	52	5	8	33	1.55
15927989--15928149	46	3.5	46	85	0	189	18	21	14	45	1.85
15928126--15928288	45	3.6	45	86	3	238	25	21	17	36	1.94
15928126--15928325	90	2.2	90	82	1	240	24	20	18	38	1.93
15928959--15928998	21	2.0	20	85	5	53	47	2	22	27	1.64
15934552--15934593	21	2.0	21	85	4	57	21	14	26	38	1.91
15934928--15935086	25	6.3	26	80	11	136	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15934850--15935066	50	4.3	50	81	2	222	39	22	12	25	1.90
15934928--15935086	75	2.1	75	83	2	194	38	22	12	25	1.90
15948652--15948897	122	2.0	122	100	0	492	38	30	13	17	1.89
15952694--15952741	25	1.9	25	82	0	60	14	0	10	75	1.06
15956920--15956950	16	1.9	16	100	0	62	32	25	9	32	1.88
15980767--15980954	50	3.6	50	80	7	189	24	29	19	26	1.99
15980822--15980962	56	2.7	50	86	8	176	22	29	21	26	1.99
15989779--15989837	24	2.4	25	80	2	66	28	22	23	25	1.99
15989818--15989902	25	3.4	25	90	0	125	30	18	23	27	1.98
15992544--15992656	56	2.0	56	96	0	208	43	3	3	49	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126