genome.fa.s14.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  55  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15992971--15993222	43	5.9	43	90	0	335	24	27	20	27	1.99
15993659--15993745	45	1.9	46	90	2	140	33	2	21	42	1.66
15993690--15993721	16	2.0	16	100	0	64	31	0	25	43	1.55
15993822--15993858	15	2.3	16	90	9	58	37	45	5	10	1.62
15994159--15994202	12	3.8	11	85	14	54	0	11	11	77	1.00
15994809--15994845	18	2.1	18	90	10	58	32	0	5	62	1.18
15994793--15994824	12	2.7	12	95	0	55	31	3	6	59	1.38
15995161--15995233	23	3.2	24	75	12	64	35	1	4	58	1.25
15996288--15996344	9	6.6	9	82	8	73	33	0	21	45	1.52
15996282--15996335	25	2.2	25	89	0	81	35	0	18	46	1.50
15996642--15996697	24	2.3	24	87	0	85	58	1	0	39	1.08
15996650--15996696	13	3.8	12	75	13	51	63	2	0	34	1.06
15996731--15996773	22	2.0	22	90	0	68	32	44	2	20	1.65
15996735--15996789	22	2.5	21	77	13	58	36	45	1	16	1.58
15996784--15996829	21	2.2	21	88	7	67	43	30	0	26	1.55
15997183--15997382	41	4.9	41	77	2	150	27	30	18	24	1.98
16002088--16002403	51	5.6	55	68	18	193	32	18	22	26	1.97
16002088--16002403	116	2.7	113	80	7	352	32	18	22	26	1.97
16006906--16007041	51	2.7	52	86	3	197	36	27	20	15	1.93
16006955--16007365	113	3.7	110	83	7	483	31	21	19	27	1.97
16007192--16007378	52	3.5	53	74	11	182	35	20	19	24	1.95
16012809--16012952	77	1.9	75	85	2	198	36	15	21	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16014439--16014487	17	2.8	18	78	15	57	81	2	2	14	0.87
16019695--16019732	12	3.4	11	86	13	51	50	0	0	50	1.00
16028797--16028847	23	2.2	23	89	0	75	29	5	19	45	1.74
16029690--16029802	37	3.1	37	78	13	108	41	2	3	52	1.33
16029749--16029834	6	15.0	6	67	26	53	44	2	2	51	1.27
16029708--16029842	68	2.0	69	92	1	227	42	2	3	50	1.35
16029691--16029850	19	8.8	18	71	19	84	42	2	4	50	1.35
16033742--16033789	22	2.2	21	79	20	55	33	0	4	62	1.14
16035205--16035257	27	2.0	27	96	0	97	22	11	5	60	1.52
16046026--16046059	17	2.0	17	100	0	68	35	5	5	52	1.50
16048845--16048949	17	5.8	18	71	12	81	32	2	15	49	1.59
16048840--16048951	37	3.0	36	89	5	170	34	3	15	46	1.63
16048949--16049040	9	9.6	9	82	13	112	22	8	28	40	1.84
16048949--16049042	20	4.8	20	92	2	156	22	8	27	41	1.83
16060983--16061232	40	6.3	40	94	0	385	24	20	28	26	1.99
16060930--16061232	80	3.8	80	88	2	387	24	20	28	26	1.99
16060930--16061232	120	2.5	119	86	2	401	24	20	28	26	1.99
16065274--16065301	3	9.3	3	100	0	56	32	32	0	35	1.58
16070373--16070404	16	2.0	16	93	0	55	25	15	0	59	1.36
16096181--16096240	31	2.0	31	93	6	106	31	10	16	41	1.81
16103268--16103423	75	2.1	75	85	4	217	43	6	10	39	1.64
16110685--16110875	50	3.7	50	82	4	211	23	28	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16139261--16139324	24	2.7	24	87	0	83	40	4	7	46	1.53
16141256--16141298	3	14.7	3	95	4	79	65	0	0	34	0.93
16141326--16141364	20	2.0	20	89	0	60	66	0	2	30	1.05
16151245--16151333	25	3.6	25	74	6	90	39	25	12	22	1.89
16151226--16151349	50	2.5	50	89	0	185	37	24	12	25	1.91
16151318--16151365	25	1.9	25	82	0	60	37	20	14	27	1.92
16157025--16157265	131	1.8	131	84	3	333	26	30	18	24	1.98
16159834--16159968	67	2.0	67	95	2	245	28	32	18	20	1.96
16160038--16160180	57	2.4	60	83	9	177	23	25	20	30	1.98
16163142--16163171	12	2.4	13	94	5	53	10	20	36	33	1.86
16173187--16173220	14	2.4	14	100	0	68	29	20	11	38	1.88
16177390--16177451	31	2.0	31	100	0	124	35	12	22	29	1.91
16183063--16183111	24	2.0	24	88	7	73	65	4	18	12	1.41
16185643--16185829	50	3.7	50	70	6	126	32	22	22	22	1.98
16185568--16185938	100	3.7	100	83	4	428	29	23	22	23	1.99
16185700--16185855	50	3.1	49	70	3	159	33	21	21	23	1.97
16190389--16190430	17	2.5	17	92	0	66	35	2	2	59	1.23
16190386--16190431	20	2.3	20	85	7	58	34	2	2	60	1.21
16196583--16197139	44	12.7	44	68	11	250	30	18	22	28	1.97
16196710--16196822	46	2.5	44	78	9	104	29	21	19	30	1.97
16196583--16197022	175	2.5	175	93	0	772	31	17	21	29	1.96
16196890--16197207	132	2.4	132	92	0	537	32	19	21	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16197201--16197571	100	3.7	99	83	5	435	30	25	22	21	1.99
16197223--16197571	50	7.0	49	67	6	173	31	25	21	21	1.98
16197486--16197649	86	1.9	85	90	3	258	28	27	23	20	1.99
16199062--16199101	17	2.4	17	91	0	62	35	2	2	60	1.24
16199059--16199100	14	2.7	16	82	10	52	35	2	2	59	1.23
16201254--16201362	47	2.2	48	83	6	139	34	28	13	22	1.93
16201309--16201416	53	2.0	53	85	3	146	35	25	12	26	1.92
16206478--16206641	79	2.1	78	86	2	229	29	17	10	42	1.82
16217513--16217543	15	2.1	15	100	0	62	25	12	25	35	1.92
16219567--16219649	21	4.0	21	73	6	78	15	25	19	39	1.91
16219524--16219649	63	2.0	63	87	3	182	15	23	18	42	1.89
16220390--16220501	42	2.7	42	88	0	161	16	20	34	27	1.95
16228451--16228480	13	2.3	13	100	0	60	53	10	0	36	1.35
16229669--16229720	24	2.2	24	85	0	68	48	11	3	36	1.58
16233995--16234046	24	2.2	24	82	0	59	48	5	5	40	1.51
16240992--16241034	22	2.0	22	90	0	68	58	11	4	25	1.52
16243166--16243224	30	2.0	30	83	12	77	52	1	6	38	1.38
16243306--16243362	20	2.8	21	85	12	75	64	3	5	26	1.30
16243314--16243372	19	2.9	20	87	7	75	62	5	3	28	1.32
16243315--16243372	9	5.8	10	75	15	57	62	5	3	29	1.33
16262923--16263123	106	1.9	106	97	0	384	29	19	19	30	1.97
16264438--16264477	20	2.0	21	90	5	64	30	0	2	67	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16265568--16265807	120	2.0	120	92	1	401	33	0	24	41	1.61
16271144--16271213	25	2.8	25	88	0	95	32	17	31	18	1.94
16276137--16276183	13	3.4	14	79	8	51	61	27	4	6	1.39
16276531--16276605	34	2.2	34	83	9	91	62	1	28	8	1.31
16286355--16286406	20	2.6	20	87	0	77	50	0	25	25	1.50
16294879--16294972	40	2.3	40	77	0	107	23	19	19	38	1.93
16294811--16294978	80	2.1	80	82	2	203	25	19	18	36	1.94
16301663--16301708	18	2.6	18	92	0	83	32	23	0	43	1.54
16304610--16304649	21	2.0	21	90	5	64	35	0	25	40	1.56
16307341--16307366	11	2.4	11	100	0	52	50	7	42	0	1.31
16308025--16308066	9	4.8	9	77	16	52	33	0	7	59	1.25
16311966--16312061	39	2.5	39	80	6	108	20	23	28	27	1.99
16327554--16327598	3	15.0	3	88	0	63	2	0	26	71	0.98
16338784--16338835	18	2.9	17	80	13	52	34	0	15	50	1.45
16349044--16349082	18	2.2	17	86	13	53	33	0	20	46	1.51
16349309--16349384	23	3.3	23	83	0	107	22	21	25	31	1.98
16354698--16354740	18	2.4	18	84	0	59	39	4	27	27	1.76
16360192--16360262	36	2.0	35	88	2	106	40	15	19	23	1.90
16362403--16362428	11	2.4	11	100	0	52	26	46	7	19	1.77
16368684--16368759	23	3.3	23	94	0	134	19	22	26	31	1.98
16375795--16375833	18	2.2	17	86	13	53	33	0	20	46	1.51
16376059--16376134	23	3.3	23	94	0	134	21	19	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16381735--16381969	44	5.4	42	77	9	206	31	23	18	25	1.97
16381767--16381969	86	2.3	86	79	9	234	31	25	17	26	1.97
16381767--16381986	44	5.1	43	80	4	219	31	26	17	25	1.97
16381767--16382004	86	2.8	84	76	12	232	31	26	17	24	1.97
16382049--16382086	18	2.1	19	90	5	60	36	0	0	63	0.95
16383061--16383091	16	1.9	16	100	0	62	38	12	12	35	1.82
16384075--16384114	21	2.0	21	90	5	64	37	0	5	57	1.21
16385348--16385373	8	3.2	8	100	0	52	65	11	11	11	1.48
16386240--16386434	41	4.8	41	75	10	193	32	27	16	23	1.96
16386248--16386427	82	2.2	82	88	2	263	31	27	17	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126