genome.fa.s14.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  87  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26394417--26394472	26	2.2	25	93	3	94	75	10	14	0	1.06
26397670--26397849	90	2.0	90	96	0	333	28	10	19	41	1.84
26400112--26400173	31	2.0	31	96	0	115	33	9	14	41	1.79
26402264--26402327	25	2.6	25	87	5	85	26	32	9	31	1.88
26406041--26406490	225	2.0	225	100	0	900	23	19	20	37	1.94
26411737--26411771	13	2.7	13	95	0	61	31	0	0	68	0.90
26412046--26412244	109	1.8	108	80	8	242	47	7	7	38	1.59
26412498--26412569	26	2.7	27	75	14	69	45	2	1	50	1.25
26413363--26413392	3	10.0	3	100	0	60	66	0	0	33	0.92
26415445--26415487	15	2.9	15	96	0	77	34	6	25	32	1.83
26419489--26419586	25	4.0	25	78	5	85	21	23	21	33	1.97
26429639--26429731	21	4.4	21	86	0	105	24	24	31	19	1.98
26434768--26434833	29	2.3	29	100	0	132	34	19	7	37	1.80
26436534--26436569	18	2.0	18	100	0	72	38	27	5	27	1.79
26439848--26439893	15	3.0	16	82	17	62	15	47	0	36	1.45
26439858--26439899	19	2.2	19	86	0	57	14	47	0	38	1.44
26444701--26444918	45	4.9	45	81	3	237	34	23	15	27	1.94
26444701--26444920	90	2.5	89	84	4	282	34	23	15	26	1.94
26447321--26447364	17	2.6	17	96	0	79	75	0	6	18	1.02
26452079--26452134	29	2.0	28	83	10	71	26	26	8	37	1.86
26457119--26457471	126	2.8	126	88	2	548	29	16	21	32	1.95
26460481--26460698	116	1.9	116	96	0	400	44	9	8	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26460700--26460745	22	2.2	20	88	11	67	26	0	28	45	1.54
26460716--26460796	29	2.6	31	86	7	121	25	0	27	46	1.53
26460812--26460949	25	5.7	25	74	13	137	41	14	0	43	1.50
26460822--26461009	44	4.1	44	75	12	182	45	13	0	39	1.48
26461426--26461460	18	1.9	18	94	0	61	34	8	31	25	1.86
26463021--26463076	22	2.5	22	94	2	94	41	0	30	28	1.57
26463062--26463095	10	3.1	11	87	12	52	47	0	35	17	1.48
26464195--26464234	20	2.0	20	90	5	62	35	2	0	62	1.09
26465111--26465190	22	3.7	22	85	6	94	35	8	18	37	1.82
26465458--26465489	15	2.1	16	94	5	57	31	15	0	53	1.43
26465719--26465794	36	2.1	37	80	7	84	39	9	1	50	1.43
26466066--26466092	3	9.0	3	100	0	54	33	0	0	66	0.92
26470394--26470496	50	2.1	50	94	0	179	58	5	2	33	1.37
26471127--26471191	11	5.8	12	79	15	68	26	30	1	41	1.65
26472097--26472129	7	4.7	7	100	0	66	27	0	15	57	1.38
26473289--26475031	23	78.0	22	74	11	1289	48	24	0	26	1.55
26473287--26475039	45	39.2	44	76	12	1305	48	24	0	26	1.55
26473743--26474324	65	8.8	65	72	20	273	49	24	0	26	1.52
26473994--26474152	60	2.7	59	84	9	209	47	24	0	27	1.56
26474091--26475021	68	13.8	67	80	10	609	48	25	0	26	1.55
26474719--26475040	22	14.6	21	73	14	181	46	24	0	27	1.59
26478254--26478630	125	3.0	124	93	1	619	31	22	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26478627--26478682	9	6.8	9	82	17	61	48	35	7	8	1.62
26492636--26492665	13	2.3	13	100	0	60	40	20	10	30	1.85
26513591--26513615	8	3.1	8	100	0	50	12	0	0	88	0.53
26517390--26517472	34	2.4	34	82	5	105	36	4	14	44	1.66
26517392--26517452	17	3.6	17	86	0	86	39	3	14	42	1.62
26521166--26521215	21	2.4	21	76	6	57	32	30	10	28	1.89
26522498--26522576	36	2.2	36	86	0	104	11	17	35	35	1.86
26533361--26533395	16	2.2	16	90	10	54	17	5	2	74	1.14
26550501--26550542	18	2.3	19	83	4	50	61	4	4	28	1.36
26551748--26551910	45	3.6	45	82	4	152	23	16	15	43	1.87
26551796--26551960	45	3.7	45	78	11	144	24	18	13	43	1.86
26560360--26560390	12	2.5	13	94	5	55	45	0	12	41	1.42
26564504--26564532	4	7.2	4	100	0	58	27	0	0	72	0.85
26565619--26565814	41	4.8	41	88	0	266	32	30	18	18	1.96
26565951--26566299	47	6.9	47	71	16	252	38	16	6	38	1.75
26565920--26566165	98	2.5	98	95	1	438	39	15	6	39	1.73
26566018--26566319	161	1.8	165	90	5	488	39	14	5	40	1.71
26579748--26579804	20	2.8	20	82	15	64	52	3	0	43	1.18
26588466--26588508	20	2.2	20	87	8	61	39	2	2	55	1.25
26588585--26588633	25	2.0	26	84	8	66	40	0	10	48	1.37
26589277--26589338	22	2.9	20	75	17	54	56	12	0	30	1.37
26592453--26592776	162	2.0	162	94	0	567	23	12	21	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26606465--26606506	22	1.9	22	90	0	66	40	16	26	16	1.90
26608991--26609143	71	2.1	72	92	1	254	30	29	17	22	1.97
26609062--26609285	104	2.2	104	95	1	396	31	30	19	18	1.96
26609613--26609677	30	2.2	29	81	8	76	30	27	6	35	1.81
26609620--26609677	30	1.9	30	85	0	80	31	24	6	37	1.82
26613578--26613724	58	2.6	58	80	1	170	39	9	19	31	1.83
26613749--26614125	69	5.5	69	82	2	416	20	17	25	36	1.94
26613743--26614141	139	2.9	137	82	4	455	21	17	25	36	1.94
26621101--26621141	18	2.2	19	87	12	59	39	0	2	58	1.11
26623963--26624006	19	2.2	20	96	4	81	50	9	4	36	1.55
26634065--26634198	56	2.4	58	83	7	177	48	4	19	27	1.68
26634113--26634264	62	2.5	62	86	5	202	50	6	18	24	1.70
26634239--26634276	6	6.2	6	90	6	58	65	2	15	15	1.38
26634239--26634276	13	3.0	13	92	3	60	65	2	15	15	1.38
26641256--26641316	28	2.2	27	88	5	95	32	24	21	21	1.98
26641263--26641316	28	1.9	28	96	0	99	31	24	22	22	1.98
26649431--26649474	11	3.9	11	82	5	52	34	0	2	63	1.07
26654721--26654769	24	2.0	24	100	0	98	24	24	4	46	1.69
26658381--26658405	12	2.1	12	100	0	50	48	8	0	44	1.32
26661375--26661416	17	2.4	17	88	4	57	42	4	0	52	1.22
26662667--26662906	120	2.0	120	100	0	480	36	8	12	42	1.73
26670347--26670394	21	2.3	20	80	16	53	2	8	8	81	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26672729--26672779	21	2.4	21	83	9	68	60	0	1	37	1.08
26673190--26673218	14	2.1	14	100	0	58	20	13	13	51	1.75
26673550--26673580	3	10.3	3	100	0	62	64	0	0	35	0.94
26676314--26676356	21	2.0	21	86	0	59	69	6	0	23	1.12
26677090--26677124	13	2.6	13	90	4	52	77	0	8	14	0.99
26684174--26684265	42	2.2	42	84	2	112	29	26	16	28	1.97
26684164--26684265	43	2.4	43	81	1	116	29	27	15	27	1.96
26693920--26694010	45	2.0	45	91	0	146	27	10	24	37	1.89
26699505--26699636	64	2.1	64	92	0	219	30	30	13	25	1.94
26711983--26712045	23	2.7	24	82	7	67	42	6	3	47	1.44
26717894--26717920	13	2.1	13	100	0	54	25	37	7	29	1.83
26717932--26718512	44	13.2	44	64	9	171	25	23	19	31	1.98
26717907--26718562	132	5.0	132	90	0	1008	25	24	19	30	1.98
26721108--26721430	161	2.0	161	100	0	646	30	22	17	29	1.97
26731719--26731765	22	2.1	22	84	4	58	63	2	12	21	1.39
26732603--26732662	28	2.1	28	87	0	84	58	23	1	16	1.47
26734968--26735053	26	3.3	26	80	8	86	41	26	11	19	1.86
26735333--26735367	18	1.9	18	88	11	54	54	2	0	42	1.15
26736108--26736146	19	2.2	18	86	9	53	64	5	5	25	1.35
26739867--26740027	33	4.8	32	73	8	124	28	24	15	31	1.96
26739855--26740094	101	2.4	101	94	0	408	28	24	15	32	1.95
26740453--26740491	20	2.0	20	85	5	53	30	10	2	56	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26741216--26741245	15	2.0	15	93	0	51	30	0	0	70	0.88
26743430--26743469	19	2.0	20	85	4	55	35	0	0	65	0.93
26743400--26743479	27	2.9	29	77	5	94	41	0	1	57	1.07
26749347--26749377	2	15.5	2	100	0	62	51	0	48	0	1.00
26752583--26752624	18	2.3	19	83	4	59	57	2	11	28	1.47
26753383--26753413	16	1.9	16	100	0	62	45	32	6	16	1.72
26757717--26757771	27	2.0	27	85	0	74	47	5	0	47	1.25
26764779--26764831	26	2.0	26	100	0	106	18	22	15	43	1.87
26767361--26767588	101	2.3	101	84	4	282	33	15	23	27	1.95
26773171--26773315	41	3.5	41	91	0	236	28	20	26	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126