genome.fa.s14.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  111  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34035507--34035582	36	2.1	36	90	4	118	27	7	22	42	1.81
34036667--34036741	22	3.3	22	75	3	78	28	32	18	21	1.97
34038757--34038796	14	2.9	14	84	0	53	32	7	17	42	1.77
34038765--34038831	35	1.9	35	87	3	100	31	10	13	44	1.77
34038780--34038819	20	2.0	20	85	0	53	27	12	12	47	1.77
34040178--34040243	27	2.4	27	78	9	71	53	19	3	24	1.60
34045030--34045066	18	2.0	19	89	5	58	24	0	0	75	0.80
34045406--34045464	31	1.9	31	89	0	91	35	8	13	42	1.75
34048902--34048944	22	2.0	20	82	8	50	60	0	0	39	0.97
34053689--34053960	69	3.9	69	84	1	312	37	19	13	29	1.90
34053667--34053949	22	12.5	22	67	14	137	37	20	13	28	1.91
34053695--34053991	69	4.3	69	81	5	305	37	19	13	29	1.89
34053717--34053965	138	1.8	138	85	1	347	36	18	13	30	1.90
34054593--34054723	43	3.1	43	81	4	133	30	26	14	28	1.95
34055669--34055698	14	2.1	14	100	0	60	63	13	0	23	1.29
34065983--34066721	74	10.1	74	88	2	1064	26	8	28	37	1.85
34065983--34066721	147	5.0	148	89	2	1075	26	8	28	37	1.85
34065983--34066989	294	3.5	292	88	5	1404	26	8	27	37	1.85
34066671--34066773	52	2.0	52	96	0	188	26	9	26	37	1.87
34066597--34066847	126	2.0	126	93	0	430	25	9	27	37	1.86
34066721--34066989	74	3.6	74	95	0	457	27	8	26	37	1.85
34066521--34066921	200	2.0	200	92	0	667	25	8	27	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34066450--34066989	274	2.0	273	94	0	954	26	8	27	37	1.86
34074124--34074310	94	2.0	94	88	0	275	24	23	18	34	1.96
34074236--34074289	27	2.0	27	85	7	74	25	29	14	29	1.95
34074363--34074391	13	2.1	14	93	6	51	72	3	17	6	1.21
34074826--34074855	8	3.8	8	95	0	51	66	0	0	33	0.92
34078889--34078967	39	2.0	39	95	0	140	16	8	21	53	1.70
34080599--34080639	20	2.0	20	85	0	55	41	0	14	43	1.45
34081745--34081852	51	2.1	51	84	0	135	30	16	4	48	1.67
34085742--34085781	4	9.8	4	84	15	55	72	0	2	25	0.97
34085753--34085781	15	1.9	15	100	0	58	75	0	0	24	0.80
34087537--34087648	43	2.6	43	87	2	154	20	21	22	35	1.96
34088300--34088331	5	6.2	5	96	3	55	43	0	0	56	0.99
34088241--34088331	39	2.3	39	76	10	98	48	2	3	46	1.31
34088745--34088773	9	3.0	10	90	10	51	31	0	0	68	0.89
34093075--34093123	21	2.4	20	83	10	55	22	6	6	65	1.38
34092906--34093215	154	2.0	155	92	0	523	29	12	10	46	1.76
34096670--34096704	16	2.3	15	90	9	54	11	0	2	85	0.69
34101714--34101745	16	2.0	16	93	0	55	71	6	3	18	1.20
34105128--34105171	22	2.0	22	95	0	79	27	13	15	43	1.85
34106547--34106631	45	1.9	44	90	2	134	42	4	38	14	1.66
34112391--34112434	19	2.3	19	88	7	63	65	2	4	27	1.23
34120864--34120981	39	3.0	39	74	0	119	29	5	22	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34134854--34136383	44	34.5	44	76	6	1198	29	25	15	29	1.96
34134854--34136451	222	7.2	219	84	3	1562	29	25	15	29	1.96
34136369--34136446	37	2.1	38	82	2	95	29	25	16	28	1.97
34136805--34136853	26	1.9	25	84	12	64	61	10	14	14	1.57
34146562--34146632	35	2.0	35	100	0	142	42	9	8	39	1.69
34149102--34149192	42	2.2	42	87	0	137	28	6	17	47	1.73
34158164--34158199	17	2.2	17	90	5	56	0	16	5	77	0.94
34158246--34158276	5	6.2	5	92	0	53	54	0	3	41	1.16
34159310--34159408	50	2.0	50	92	4	164	44	11	19	25	1.83
34161809--34161875	4	16.8	4	96	0	116	25	26	0	47	1.52
34166915--34166979	29	2.2	29	97	0	121	24	26	23	26	2.00
34172907--34173030	62	2.1	57	85	7	158	52	4	3	39	1.39
34176991--34177028	19	2.0	19	85	10	51	42	0	15	42	1.47
34178124--34178213	23	4.0	23	78	7	96	20	21	21	37	1.94
34181540--34181589	24	2.1	24	85	7	66	12	40	8	40	1.72
34183521--34183561	10	4.4	10	82	17	52	58	0	0	41	0.98
34188118--34188230	56	2.0	56	100	0	226	49	12	15	22	1.78
34195961--34196000	17	2.3	18	86	4	55	55	0	0	45	0.99
34198946--34199100	70	2.2	70	90	2	240	28	22	18	30	1.97
34201686--34202304	70	8.8	70	80	3	600	30	21	17	30	1.96
34201686--34202304	140	4.4	140	84	3	681	30	21	17	30	1.96
34201715--34202304	210	2.8	208	84	2	716	30	21	17	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34202381--34202666	58	4.9	58	83	2	322	33	13	13	39	1.85
34202756--34202790	14	2.6	14	90	4	54	54	5	5	34	1.48
34216283--34216324	17	2.4	17	88	4	66	45	0	7	47	1.30
34217663--34217704	18	2.3	18	88	8	59	23	14	30	30	1.94
34217673--34217730	27	2.1	27	90	0	89	31	13	25	29	1.94
34225064--34225106	20	2.0	22	86	8	63	27	2	16	53	1.55
34225803--34225884	35	2.3	36	89	2	121	12	12	32	42	1.79
34232310--34232352	15	2.8	15	76	16	52	58	0	11	30	1.34
34233883--34233937	27	2.0	27	100	0	110	29	3	23	43	1.71
34234127--34234181	3	18.3	3	100	0	110	67	0	0	32	0.91
34238964--34238997	15	2.3	15	90	5	52	67	5	0	26	1.13
34239194--34239235	22	1.9	22	90	0	66	33	0	33	33	1.58
34239207--34239265	30	2.0	30	93	0	100	33	0	33	32	1.58
34239236--34239297	22	2.8	23	92	4	101	37	1	25	35	1.66
34239237--34239306	22	3.2	21	88	11	97	37	1	27	34	1.66
34246448--34246553	9	11.4	9	68	16	65	65	0	0	33	1.06
34246471--34246552	29	2.9	28	82	12	103	62	0	1	36	1.03
34246917--34246967	24	2.1	24	96	0	93	47	1	7	43	1.43
34257331--34257367	16	2.3	16	86	13	58	40	0	0	59	0.97
34257374--34257419	24	1.9	24	82	8	58	47	0	2	50	1.13
34262422--34262503	38	2.1	39	86	2	112	51	8	10	29	1.67
34265687--34265987	24	12.5	24	74	4	221	40	13	19	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34265810--34265975	49	3.5	48	78	8	142	41	14	18	25	1.88
34265853--34266013	48	3.3	48	80	3	189	43	14	16	24	1.86
34265853--34265970	49	2.4	48	88	1	164	43	15	16	24	1.87
34266327--34266545	54	4.1	54	83	0	251	37	14	21	26	1.92
34266356--34266545	54	3.5	53	86	2	254	37	15	20	26	1.92
34266339--34266613	107	2.6	109	80	2	317	37	14	20	27	1.92
34269207--34269260	21	2.6	21	78	0	63	61	0	0	38	0.96
34269458--34269495	9	4.2	9	83	12	51	34	0	0	65	0.93
34269459--34269495	19	2.0	18	89	5	56	32	0	0	67	0.91
34279372--34279422	16	3.2	16	73	15	61	60	1	1	35	1.19
34279372--34279446	31	2.4	31	95	0	132	57	4	2	36	1.32
34290883--34290910	14	2.0	14	100	0	56	7	14	28	50	1.69
34291299--34291398	45	2.2	45	84	5	123	28	26	16	30	1.96
34291204--34291973	44	17.8	43	70	14	345	27	23	20	28	1.99
34291171--34291976	216	3.7	216	91	1	1251	27	24	20	28	1.99
34305710--34305747	19	2.0	19	85	10	51	21	42	0	36	1.53
34323734--34323806	23	3.2	23	92	0	128	28	23	21	26	1.99
34324445--34324609	83	2.0	83	98	0	321	36	17	4	40	1.71
34331159--34331257	23	4.3	23	88	5	155	30	25	21	23	1.99
34334685--34334727	18	2.4	17	80	11	50	32	4	2	60	1.30
34337233--34337304	32	2.2	33	85	7	94	30	6	13	48	1.69
34337903--34338015	56	2.0	56	98	0	217	48	15	13	22	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34339554--34339597	6	7.0	6	85	10	61	50	0	50	0	1.00
34340601--34340633	7	4.7	7	96	0	57	15	3	0	81	0.80
34340601--34340645	14	3.4	14	84	9	58	15	6	0	77	0.96
34340624--34340654	6	5.2	6	100	0	62	16	16	0	67	1.23
34350182--34350994	2	406.5	2	100	0	1626	49	0	50	0	1.00
34350994--34351036	2	21.5	2	100	0	86	0	0	51	48	1.00
34355800--34355862	10	6.4	10	72	22	53	30	7	0	61	1.24
34355870--34355912	19	2.3	19	100	0	86	11	32	0	55	1.36
34358411--34358439	15	1.9	15	100	0	58	37	27	27	6	1.82
34370987--34371029	22	1.9	23	90	4	70	69	0	13	16	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126