genome.fa.s14.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  112  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34390252--34390402	41	3.7	42	80	7	168	24	27	19	27	1.99
34390255--34390421	41	4.1	40	78	9	115	25	26	19	28	1.99
34390762--34390918	70	2.2	66	80	10	161	42	13	1	42	1.55
34392204--34392228	13	1.9	13	100	0	50	68	24	0	8	1.16
34395936--34396082	72	2.1	71	93	1	249	41	16	13	28	1.86
34396876--34396912	18	2.1	18	100	0	74	27	16	27	29	1.97
34409587--34409690	51	2.0	51	98	0	199	41	13	19	25	1.88
34412654--34412729	36	2.1	36	92	0	125	35	32	5	26	1.79
34419983--34420045	31	2.0	31	100	0	126	46	9	9	34	1.69
34421914--34421980	30	2.2	31	84	5	84	46	8	20	23	1.79
34425106--34425212	5	22.4	5	74	14	57	55	3	0	40	1.24
34425111--34425193	9	8.9	9	78	5	67	53	4	1	40	1.30
34425111--34425202	19	4.9	18	78	7	94	54	4	1	40	1.27
34425107--34425209	24	4.5	23	74	14	88	54	3	0	40	1.25
34430897--34430973	25	3.1	26	74	18	67	36	19	24	19	1.95
34434318--34434377	31	1.9	31	100	0	120	45	11	23	20	1.83
34442573--34442652	31	2.5	30	84	9	97	47	0	13	38	1.43
34447378--34447407	14	2.1	14	93	0	51	83	0	3	13	0.77
34449709--34449736	6	4.7	6	100	0	56	50	0	17	32	1.47
34454176--34454214	7	5.7	7	93	3	62	28	10	30	30	1.90
34456687--34456717	16	1.9	16	100	0	62	0	22	19	58	1.40
34457631--34457658	13	2.2	13	100	0	56	46	17	0	35	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34462549--34462622	27	2.6	29	76	10	80	40	0	2	56	1.13
34462566--34462619	27	2.0	27	89	7	83	38	0	1	59	1.08
34462555--34462608	15	3.8	15	76	14	60	38	0	3	57	1.17
34463468--34463505	18	2.1	18	100	0	76	21	28	23	26	1.99
34472505--34472591	34	2.6	34	78	5	79	42	1	2	54	1.20
34482348--34482425	30	2.6	29	76	11	79	25	24	3	46	1.70
34486711--34486766	28	2.0	28	100	0	112	35	10	10	42	1.74
34489589--34489659	5	14.6	5	74	21	62	38	0	4	57	1.18
34489617--34489659	19	2.3	19	92	8	70	41	0	0	58	0.98
34490271--34490328	30	1.9	30	89	0	89	41	3	24	31	1.71
34490661--34490775	44	2.6	44	85	2	149	35	13	22	27	1.92
34490661--34490794	46	3.0	45	82	4	153	35	14	23	26	1.93
34493174--34493201	13	2.2	13	100	0	56	21	7	25	46	1.76
34495084--34495155	5	14.8	5	74	21	64	38	1	4	55	1.28
34495113--34495155	19	2.3	19	92	8	70	41	2	0	55	1.12
34495768--34495825	30	1.9	30	89	0	89	41	3	24	31	1.71
34496037--34496068	13	2.5	13	94	0	55	31	0	12	56	1.37
34496163--34496404	50	4.7	50	86	4	297	26	24	29	19	1.99
34496163--34496412	100	2.4	103	88	6	364	26	24	29	20	1.99
34501489--34501524	15	2.5	14	95	4	63	80	0	0	19	0.71
34513288--34513409	60	2.0	60	100	0	244	37	8	24	29	1.84
34517014--34517072	21	2.8	21	77	12	59	54	10	5	30	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34522668--34522783	41	2.8	41	84	0	151	18	19	29	32	1.96
34523591--34523800	68	3.0	69	85	4	264	26	9	19	44	1.81
34526739--34526876	32	4.5	32	82	12	164	52	16	2	28	1.58
34526737--34526884	59	2.4	62	81	10	164	52	16	2	28	1.57
34530067--34530116	17	3.2	17	67	21	54	56	20	10	14	1.66
34533989--34534040	24	2.2	24	89	0	77	34	1	5	57	1.33
34535743--34535777	1	35.0	1	100	0	70	0	0	0	100	0.00
34543063--34543094	12	2.6	13	85	14	50	62	6	0	31	1.20
34543333--34543390	30	1.9	31	85	3	82	31	18	3	46	1.66
34550685--34550868	66	2.8	66	84	5	228	26	24	17	30	1.97
34550744--34550898	66	2.3	66	83	2	186	26	26	18	28	1.98
34554657--34554704	17	2.9	16	76	14	53	64	8	8	18	1.46
34556437--34556483	19	2.6	18	83	6	58	53	4	2	40	1.32
34556446--34556492	19	2.5	19	85	0	58	55	4	2	38	1.31
34559027--34559067	21	2.0	21	95	0	73	19	24	19	36	1.95
34560522--34560555	17	1.9	18	88	5	52	11	0	14	73	1.10
34568646--34568748	38	2.6	37	77	8	107	23	18	26	32	1.97
34569025--34569167	33	4.3	33	75	8	110	32	15	23	28	1.95
34570345--34570385	21	2.0	21	90	0	64	24	24	31	19	1.98
34580582--34580619	19	2.0	20	94	5	69	68	26	0	5	1.11
34582686--34582734	16	3.1	15	82	11	53	28	4	6	61	1.38
34584128--34584212	10	8.9	9	77	13	73	64	2	0	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34584142--34584212	30	2.4	29	90	4	106	61	2	0	35	1.10
34584475--34584517	19	2.3	19	84	4	61	27	6	2	62	1.33
34585687--34585721	18	2.0	17	88	5	52	54	0	0	45	0.99
34585581--34585889	157	2.0	157	97	0	582	44	3	4	47	1.39
34585824--34585865	15	2.7	16	82	14	52	52	2	0	45	1.13
34585833--34585874	15	2.9	15	82	10	52	52	0	0	47	1.00
34592652--34592744	44	2.1	44	84	9	118	35	26	3	34	1.73
34599415--34599468	15	3.4	17	65	15	51	50	3	7	38	1.48
34599414--34599499	31	2.7	32	85	5	111	50	2	6	40	1.42
34599570--34599606	17	2.2	16	90	4	56	72	2	0	24	0.97
34599909--34599993	42	2.0	42	93	0	143	31	17	9	41	1.82
34612945--34613105	41	3.9	40	79	6	162	26	25	19	28	1.99
34614782--34614872	25	3.7	24	75	5	83	31	15	26	26	1.96
34614861--34615001	25	5.8	24	71	13	85	34	22	26	16	1.95
34618643--34618686	9	4.9	9	81	10	54	40	0	4	54	1.21
34629442--34629469	2	14.0	2	100	0	56	50	0	50	0	1.00
34659304--34659378	39	1.9	39	94	0	132	26	28	28	17	1.98
34659436--34659460	13	1.9	13	100	0	50	48	0	8	44	1.32
34659573--34659621	20	2.3	22	79	13	66	46	8	10	34	1.67
34659583--34659621	20	2.0	20	94	0	69	46	10	12	30	1.75
34660758--34661315	131	4.3	131	83	0	632	38	12	15	33	1.85
34660758--34661315	262	2.1	262	84	0	740	38	12	15	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34665678--34665829	41	3.7	41	72	5	137	26	28	25	20	1.99
34668652--34668716	17	3.8	17	73	17	62	20	27	0	52	1.47
34668654--34668723	6	12.4	5	84	13	59	22	25	0	51	1.48
34668654--34668723	11	6.2	10	78	18	59	22	25	0	51	1.48
34668655--34668724	17	4.1	16	76	20	61	24	24	0	51	1.49
34678542--34678595	27	2.0	27	92	0	90	35	16	24	24	1.95
34694356--34694485	41	3.2	41	89	0	197	23	16	28	30	1.97
34694655--34694688	14	2.4	14	90	0	50	14	0	35	50	1.44
34694655--34694823	75	2.3	75	92	0	284	21	2	27	47	1.63
34694789--34694826	15	2.6	14	87	4	58	18	0	36	44	1.50
34694784--34694831	22	2.2	21	81	3	60	22	0	29	47	1.51
34694784--34694915	7	18.6	7	70	10	63	20	0	32	46	1.56
34694792--34694916	22	5.9	20	74	10	88	20	0	33	45	1.57
34694784--34694913	57	2.3	56	81	4	143	20	0	33	46	1.56
34702642--34702732	43	2.1	43	83	2	112	35	10	9	43	1.73
34703092--34703272	87	2.1	87	87	2	256	28	20	25	25	1.99
34703092--34703276	43	4.3	43	83	2	226	27	20	25	26	1.99
34712760--34712784	3	8.3	3	100	0	50	32	0	0	68	0.90
34715165--34715202	15	2.3	16	82	17	51	60	13	7	18	1.56
34715171--34715202	15	2.1	16	94	5	57	62	15	6	15	1.51
34722167--34722237	35	2.0	35	100	0	142	39	25	8	26	1.84
34726206--34726253	25	2.0	25	87	4	71	68	4	8	18	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34727147--34727188	22	1.9	22	85	0	57	35	2	2	59	1.23
34728088--34728161	30	2.4	29	82	8	85	24	24	12	39	1.89
34732930--34733026	28	3.5	28	70	4	88	21	13	16	48	1.80
34735355--34735425	31	2.3	31	95	2	126	33	1	22	42	1.63
34739625--34739730	43	2.5	42	77	13	117	41	21	16	20	1.90
34739653--34739827	42	4.1	42	79	2	143	41	17	17	23	1.90
34739696--34739817	42	2.9	42	80	6	147	42	17	16	23	1.88
34740242--34740276	17	2.1	17	88	0	52	48	17	0	34	1.47
34741064--34741135	23	3.1	23	83	0	99	26	18	13	41	1.87
34741352--34741399	20	2.5	20	89	3	71	12	8	25	54	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126