genome.fa.s14.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  37  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10856574--10856737	39	4.0	40	76	18	162	0	30	0	68	0.94
10856578--10856714	46	3.1	46	84	11	162	0	28	0	70	0.92
10856597--10856737	18	8.3	18	67	19	81	0	30	0	68	0.94
10856695--10856747	23	2.3	24	87	9	83	0	37	0	62	0.96
10856780--10856847	27	2.5	27	100	0	136	11	29	29	29	1.92
10856917--10856985	27	2.5	27	83	6	86	47	1	10	40	1.46
10857773--10857813	21	2.0	21	90	4	66	14	34	24	26	1.94
10869574--10869640	31	2.2	31	86	2	91	37	14	38	8	1.78
10880318--10880360	21	2.0	21	100	0	86	34	32	18	13	1.90
10880625--10880654	14	2.1	14	100	0	60	20	20	16	43	1.88
10883513--10883545	12	2.8	12	90	4	50	42	33	18	6	1.75
10884203--10884257	21	2.6	21	85	0	74	29	36	9	25	1.87
10892828--10892869	22	1.9	22	90	0	66	40	16	9	33	1.81
10894096--10894129	16	2.1	17	88	5	52	47	0	0	52	1.00
10895267--10895444	58	3.1	58	80	5	175	25	12	11	49	1.75
10902649--10902707	30	2.0	28	83	6	73	42	10	6	40	1.65
10904058--10904097	19	2.1	19	90	9	64	80	2	7	10	1.00
10911929--10911975	24	2.0	24	83	8	60	70	6	6	17	1.30
10912319--10912359	21	2.0	21	85	0	55	48	9	7	34	1.64
10912921--10912975	19	2.9	19	94	0	92	34	16	9	40	1.80
10914688--10914990	105	2.9	105	80	2	331	35	11	21	31	1.89
10914743--10915019	105	2.6	105	79	1	304	35	11	21	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10920073--10920122	20	2.7	18	81	6	55	34	2	16	48	1.57
10922895--10922923	14	2.1	14	100	0	58	27	0	20	51	1.47
10924421--10924497	26	3.0	26	92	0	118	38	23	9	28	1.85
10924421--10924497	13	5.9	13	84	0	100	38	23	9	28	1.85
10930632--10932504	937	2.0	937	100	0	3746	39	15	15	30	1.88
10942230--10942300	29	2.4	29	78	4	70	35	4	7	53	1.48
10942497--10942521	12	2.1	12	100	0	50	32	16	20	32	1.94
10952357--10952386	15	2.0	15	93	0	51	33	10	6	50	1.62
10957803--10957844	21	2.0	21	90	0	66	14	57	7	21	1.61
10959670--10959705	15	2.3	15	90	4	54	52	0	0	47	1.00
10964910--10964987	30	2.5	32	80	16	92	46	3	0	50	1.20
10965695--10965723	13	2.1	14	93	6	51	34	0	0	65	0.93
10966116--10966172	22	2.6	22	78	8	71	15	21	19	43	1.87
10966493--10966549	22	2.6	22	78	8	71	15	21	19	43	1.87
10965961--10966690	377	1.9	377	100	0	1460	27	14	19	38	1.91
10972435--10972481	15	3.0	16	84	12	62	53	0	0	46	1.00
10973525--10973653	67	1.9	67	93	0	222	25	32	20	20	1.97
10973753--10973863	61	1.9	58	85	10	156	23	26	23	27	2.00
10986919--10987152	124	1.9	121	84	6	310	32	8	18	41	1.81
10995883--10995940	20	3.1	19	80	11	66	48	3	0	48	1.18
10998770--10998832	22	2.9	22	83	9	67	19	25	17	38	1.93
10998783--10998835	22	2.4	22	87	6	72	13	26	18	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11003837--11003888	11	4.6	11	85	2	68	25	32	1	40	1.67
11003836--11003912	22	3.5	21	81	10	75	28	28	1	41	1.64
11003836--11003912	11	6.9	11	73	16	61	28	28	1	41	1.64
11003873--11003970	50	2.0	50	85	4	135	28	25	2	43	1.66
11003973--11004002	14	2.1	15	93	6	53	53	0	0	46	1.00
11008436--11009003	127	4.5	127	92	2	878	29	23	16	30	1.96
11014126--11014155	11	2.6	11	94	5	51	60	0	3	36	1.14
11015287--11015331	23	2.0	22	83	12	56	44	2	4	48	1.35
11018072--11018243	93	1.8	93	88	0	263	40	15	18	26	1.90
11024194--11024231	15	2.6	15	87	4	51	39	18	5	36	1.73
11038432--11038473	19	2.2	19	87	8	59	71	0	2	26	0.98
11038429--11038514	10	9.0	10	73	10	65	65	1	2	31	1.13
11038454--11038510	18	3.2	18	82	7	64	63	1	1	33	1.15
11038454--11038481	8	3.5	8	100	0	56	67	0	0	32	0.91
11039167--11039233	32	2.0	33	91	5	109	32	20	1	44	1.61
11040571--11040619	24	2.0	24	92	0	80	36	14	28	20	1.92
11043220--11043395	87	2.0	87	88	0	262	33	21	21	23	1.97
11046190--11046221	9	3.7	9	91	8	57	21	0	0	78	0.76
11056077--11056116	18	2.2	18	86	8	55	20	2	5	72	1.15
11056234--11056285	3	17.3	3	100	0	104	32	0	0	67	0.91
11064613--11064676	22	2.9	21	73	13	56	56	1	3	39	1.25
11064971--11065028	23	2.6	22	79	17	66	74	3	13	8	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11064999--11065054	24	2.3	25	84	9	71	75	3	7	14	1.16
11065019--11065063	24	1.9	23	86	4	63	75	2	4	17	1.07
11065297--11065336	19	2.1	19	95	0	71	57	0	7	35	1.27
11065577--11065618	15	2.9	15	82	10	52	52	0	0	47	1.00
11065681--11065844	54	3.2	53	70	16	137	50	3	1	45	1.25
11065717--11065765	24	2.0	24	84	11	64	59	2	0	38	1.09
11065725--11065892	47	3.7	46	72	16	143	47	3	2	46	1.32
11065784--11065844	28	2.2	28	85	5	81	50	3	0	45	1.17
11065750--11065966	91	2.4	90	87	3	317	46	4	3	46	1.38
11065784--11065926	44	3.2	42	70	20	119	48	2	2	46	1.28
11065791--11065934	47	3.1	47	66	16	129	49	3	2	45	1.31
11069070--11069155	36	2.4	37	90	2	129	53	12	27	5	1.61
11071757--11071858	51	2.0	51	96	0	186	41	11	25	21	1.87
11073899--11074681	150	5.1	150	76	10	548	31	17	17	33	1.94
11079679--11079713	3	11.3	3	93	6	61	0	31	2	65	1.07
11081757--11081783	9	3.0	9	100	0	54	66	0	0	33	0.92
11081769--11081842	16	5.0	15	71	21	50	64	0	2	32	1.07
11081759--11081827	27	2.7	25	77	20	79	65	0	1	33	1.02
11081762--11081861	43	2.3	43	94	1	173	64	0	2	34	1.05
11081793--11081841	16	3.0	17	85	14	68	61	0	2	36	1.08
11083331--11083471	44	3.3	43	80	7	151	29	8	13	48	1.72
11085311--11085348	20	1.9	19	94	5	67	36	5	10	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11089571--11089616	23	2.0	23	100	0	92	17	17	34	30	1.93
11089534--11089655	64	1.9	64	93	0	208	27	18	27	25	1.98
11089594--11089685	41	2.2	41	84	0	121	28	20	28	22	1.99
11094845--11094877	18	1.9	18	88	11	52	27	0	12	60	1.32
11096723--11096791	29	2.3	30	80	9	79	50	10	1	37	1.45
11097612--11097643	9	3.6	9	91	0	55	31	0	0	68	0.90
11097729--11097816	9	9.1	9	72	10	50	29	1	3	65	1.16
11099210--11099234	12	2.1	12	100	0	50	48	0	20	32	1.50
11104496--11104542	21	2.2	22	92	3	78	21	19	38	21	1.94
11107774--11107944	29	5.7	29	62	21	75	43	1	2	52	1.26
11107869--11108062	61	3.2	60	68	15	173	42	2	4	51	1.32
11107790--11108112	120	2.7	121	96	0	585	41	2	4	52	1.33
11108108--11108146	18	2.2	18	90	4	62	41	0	2	56	1.13
11108306--11108403	46	2.2	45	80	9	110	38	28	6	26	1.80
11110231--11110349	41	3.0	39	76	9	134	27	17	22	31	1.97
11110231--11110349	37	3.0	40	76	9	136	27	17	22	31	1.97
11126070--11126109	14	3.1	14	82	17	59	57	0	0	42	0.98
11126070--11126110	13	3.2	13	80	19	59	56	0	0	43	0.99
11126564--11126619	20	2.7	22	71	15	57	35	1	3	58	1.26
11151815--11151883	20	3.5	19	78	9	66	56	2	1	39	1.23
11153584--11153618	18	1.9	18	88	0	52	74	0	0	25	0.82
11154095--11154121	14	1.9	14	100	0	54	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11161330--11161355	7	3.7	7	100	0	52	73	0	0	26	0.84
11163053--11163098	18	2.5	18	78	21	51	0	41	2	56	1.11
11165893--11165936	21	2.2	20	83	4	52	27	2	0	70	0.99
11184092--11184138	21	2.2	22	92	3	78	21	38	19	21	1.94
11187893--11187917	3	8.3	3	100	0	50	32	0	0	68	0.90
11193410--11193448	5	7.2	5	83	16	51	5	0	53	41	1.23
11194197--11194221	10	2.5	10	100	0	50	36	0	0	64	0.94
11194156--11194332	88	2.0	88	98	0	345	42	3	10	43	1.57
11199226--11199262	19	1.9	19	94	0	65	51	0	8	40	1.32
11205949--11206011	30	2.1	30	90	0	99	25	3	14	57	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126