genome.fa.s14.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  113  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34741352--34741399	10	4.9	10	79	5	62	12	8	25	54	1.65
34744207--34744283	38	2.0	38	92	0	127	37	14	15	32	1.88
34745569--34745651	40	2.0	41	93	2	141	22	21	9	45	1.81
34750354--34750437	37	2.3	36	81	8	89	36	11	2	48	1.53
34751826--34751916	36	2.7	34	69	15	89	60	10	17	10	1.58
34753016--34753270	127	2.0	127	92	0	429	26	19	24	29	1.98
34755507--34755685	54	3.4	54	81	8	208	29	22	16	31	1.96
34755495--34755790	51	5.6	52	74	12	228	29	21	16	32	1.95
34770261--34770511	44	5.8	43	70	9	179	30	17	22	29	1.97
34770258--34770577	129	2.5	129	90	1	489	28	19	21	30	1.97
34772180--34772242	3	20.3	3	75	18	58	30	4	1	63	1.24
34775666--34775791	61	2.1	60	82	7	148	35	7	19	38	1.79
34782056--34782200	74	2.0	74	97	0	272	40	17	11	31	1.84
34783241--34783283	22	2.0	22	85	0	59	25	13	6	53	1.65
34783292--34783326	19	1.9	17	88	11	52	20	0	14	65	1.26
34783292--34783332	18	2.2	19	83	12	50	21	2	12	63	1.40
34784550--34784797	50	4.9	50	80	7	241	26	20	29	23	1.99
34784553--34784797	100	2.4	103	81	6	275	26	20	28	23	1.99
34791162--34791204	15	2.8	16	85	3	52	81	0	16	2	0.79
34792044--34792094	13	3.8	13	89	2	75	68	1	15	13	1.30
34792045--34792094	20	2.5	19	87	6	73	68	2	16	14	1.31
34792044--34792094	7	7.6	7	84	8	70	68	1	15	13	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34793303--34793667	131	2.8	131	89	1	554	29	21	24	24	1.99
34793746--34794089	44	7.1	44	62	21	118	33	15	20	31	1.93
34793726--34794123	98	4.1	98	98	0	742	33	15	20	30	1.94
34794125--34794494	170	2.1	172	86	3	510	32	18	19	28	1.96
34794512--34795281	50	15.6	50	68	8	396	33	22	20	23	1.97
34794508--34795261	100	7.6	100	77	10	621	34	22	20	22	1.97
34794950--34795124	89	2.0	89	97	0	332	35	21	21	21	1.96
34795039--34795280	101	2.4	100	81	5	292	33	22	20	23	1.97
34798956--34799175	110	2.0	110	100	0	440	38	5	25	30	1.79
34810433--34810505	30	2.4	30	88	0	110	21	31	31	15	1.94
34810778--34810818	10	3.7	11	81	18	50	26	2	0	70	0.99
34810774--34810818	22	2.0	23	86	4	65	26	2	0	71	0.98
34812560--34812592	13	2.5	13	86	13	50	36	3	15	45	1.61
34815814--34815850	6	6.0	6	96	3	65	35	32	0	32	1.58
34820039--34820065	6	4.5	6	100	0	54	70	14	14	0	1.17
34827989--34828041	17	3.0	17	73	10	52	41	5	18	33	1.74
34828013--34828057	23	2.0	23	91	4	74	37	4	17	40	1.70
34832331--34832835	252	2.0	252	96	0	938	27	20	26	24	1.99
34835721--34835826	48	2.2	49	80	11	119	63	1	27	7	1.32
34839570--34839640	27	2.6	27	84	0	97	26	28	22	22	1.99
34840037--34840102	33	2.0	34	85	8	91	19	0	27	53	1.46
34843376--34843637	17	15.4	17	76	4	206	44	24	9	22	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34847823--34847892	20	3.5	20	82	3	79	14	35	20	30	1.92
34849945--34849979	17	2.1	17	94	0	61	57	28	2	11	1.48
34850395--34850582	30	6.4	29	77	9	157	17	26	13	42	1.87
34850455--34850522	28	2.3	29	87	5	93	25	26	10	38	1.88
34850380--34850611	117	2.0	118	87	5	335	19	25	15	39	1.91
34851039--34851064	11	2.4	11	100	0	52	26	26	30	15	1.96
34851503--34851542	21	1.9	21	85	10	55	10	32	2	55	1.47
34856890--34856951	22	2.9	21	75	18	56	40	3	0	56	1.15
34862034--34862075	18	2.3	19	91	4	68	21	23	0	54	1.44
34862310--34862334	13	1.9	13	100	0	50	8	0	24	68	1.16
34863917--34864018	41	2.5	41	90	3	152	27	19	25	27	1.99
34873844--34873926	43	1.9	43	92	0	139	55	2	13	28	1.51
34878102--34878162	30	2.0	30	81	6	70	3	19	1	75	1.03
34881367--34881419	26	2.0	26	100	0	106	35	11	22	30	1.89
34886821--34886986	41	4.0	41	92	0	269	22	27	20	29	1.99
34886827--34886986	82	2.0	82	98	0	311	23	27	20	29	1.98
34887857--34887895	19	2.1	19	95	0	69	48	7	2	41	1.45
34897449--34897654	103	2.0	103	97	0	385	14	24	8	52	1.69
34897937--34898122	93	2.0	93	98	0	363	22	12	24	40	1.88
34899099--34899168	34	2.2	31	87	7	95	35	20	22	21	1.96
34899664--34899857	96	2.0	96	98	0	379	30	22	15	30	1.95
34901672--34901712	19	2.2	19	86	0	55	63	7	2	26	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34902748--34902782	12	2.9	12	91	8	54	20	0	5	74	1.02
34902988--34903086	44	2.2	44	82	7	112	26	20	22	31	1.98
34903176--34903748	88	6.5	88	92	0	887	23	23	25	27	2.00
34905941--34906040	33	3.0	33	87	10	134	8	8	7	77	1.14
34905967--34906040	15	4.6	17	66	19	59	8	6	5	79	1.04
34911068--34911108	19	2.2	19	86	0	55	63	7	2	26	1.33
34918176--34918258	42	2.0	42	95	0	148	38	9	16	34	1.82
34921060--34921113	20	2.7	19	77	8	54	72	3	0	24	1.01
34921422--34921473	18	3.2	17	70	30	51	55	3	0	40	1.18
34922865--34922892	5	5.6	5	100	0	56	82	0	0	17	0.68
34925540--34925580	21	2.0	21	85	0	55	21	34	12	31	1.91
34926969--34927143	72	2.5	72	88	5	275	54	13	6	25	1.63
34934331--34934455	63	2.0	63	84	3	162	29	7	30	32	1.84
34934340--34934489	63	2.4	63	79	2	149	27	6	34	32	1.83
34940644--34940672	2	15.0	2	92	7	51	48	0	0	51	1.00
34950425--34950464	16	2.6	15	76	7	53	65	5	5	25	1.34
34957327--34957382	12	4.6	12	82	4	67	75	3	1	19	1.05
34957327--34957382	13	4.5	13	80	8	62	75	3	1	19	1.05
34957353--34957382	11	2.7	11	100	0	60	80	6	0	13	0.91
34957428--34957491	27	2.3	27	86	10	85	75	3	9	12	1.16
34957427--34957492	28	2.3	29	82	15	84	75	3	9	12	1.14
34957630--34958029	200	2.0	200	99	0	782	30	11	26	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34958594--34958632	15	2.4	15	87	12	51	66	2	20	10	1.33
34963913--34963951	18	2.2	18	85	0	51	61	2	23	12	1.43
34965142--34965166	13	1.9	13	100	0	50	36	16	32	16	1.90
34965661--34965709	20	2.4	20	82	3	53	24	18	28	28	1.98
34965673--34965710	20	1.9	20	88	0	58	18	21	34	26	1.96
34968656--34968722	32	2.2	31	81	10	75	17	7	4	70	1.28
34968652--34968711	32	1.9	31	89	3	84	16	8	3	71	1.24
34971690--34971731	22	2.0	21	86	13	59	30	35	4	28	1.78
34976168--34976362	89	2.2	89	100	0	390	34	18	17	29	1.94
34982794--34982819	13	2.0	13	100	0	52	46	7	0	46	1.31
34983208--34983246	20	1.9	21	89	5	62	35	12	28	23	1.91
34984504--34984564	18	3.6	16	77	16	59	9	22	4	62	1.46
34984500--34984579	35	2.3	34	81	12	90	12	23	6	57	1.58
34984583--34984681	6	16.0	6	72	8	74	5	20	2	72	1.13
34985978--34986040	21	3.0	21	88	2	90	30	3	33	33	1.74
34989034--34989077	21	2.1	21	86	0	61	31	2	34	31	1.70
34989059--34989102	22	2.0	23	90	4	72	22	4	31	40	1.74
34992413--34992595	91	2.0	91	94	0	321	21	18	22	37	1.94
34992739--34992892	77	2.0	77	97	0	290	25	13	18	41	1.88
35003042--35003126	38	2.3	38	82	10	95	20	28	5	45	1.74
35013224--35013500	40	6.9	40	93	0	464	23	28	20	26	1.99
35016438--35016476	15	2.6	15	87	0	51	15	23	35	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35019443--35019467	13	1.9	13	100	0	50	12	0	56	32	1.36
35030653--35030695	22	2.0	22	86	9	61	16	6	25	51	1.69
35040034--35040071	19	2.0	19	100	0	76	42	5	26	26	1.76
35048569--35048613	21	2.1	21	100	0	90	37	4	20	37	1.73
35054285--35054507	40	5.6	39	82	5	216	27	27	20	24	1.99
35054283--35054507	80	2.8	79	82	6	240	27	28	20	24	1.99
35054285--35054507	120	1.9	119	83	4	288	27	27	20	24	1.99
35062403--35062496	40	2.3	40	92	0	152	28	28	22	20	1.98
35062477--35062516	20	2.0	20	90	0	62	25	32	30	12	1.92
35062437--35062556	60	2.0	60	95	0	213	26	30	23	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126