genome.fa.s14.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  39383930

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  43  of  126  ( 15042 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12703172--12703202	14	2.2	14	94	0	53	41	6	19	32	1.77
12704649--12705471	33	24.9	33	100	0	1646	42	12	2	42	1.57
12705928--12705971	17	2.4	19	88	7	65	2	45	0	52	1.13
12706014--12706047	17	2.0	17	88	11	52	0	32	0	67	0.91
12706747--12706771	10	2.5	10	100	0	50	8	0	0	92	0.40
12706990--12707048	31	1.9	32	86	6	86	57	11	1	28	1.44
12716828--12716867	19	2.0	20	85	4	55	25	20	7	47	1.75
12720187--12720211	13	1.9	13	100	0	50	12	24	8	56	1.62
12721026--12721340	44	7.2	44	63	14	112	29	19	21	28	1.98
12721011--12721473	132	3.5	132	92	1	714	29	19	22	28	1.98
12721488--12722775	44	29.1	44	81	6	1197	31	15	23	30	1.95
12721488--12722618	177	6.4	175	86	5	1209	31	14	23	30	1.95
12721498--12722707	265	4.6	264	82	4	1218	30	14	23	30	1.95
12733803--12733937	67	2.0	67	92	0	225	28	31	18	22	1.97
12734002--12734148	57	2.5	56	80	9	152	21	25	20	31	1.98
12734700--12734725	2	13.0	2	100	0	52	50	0	0	50	1.00
12744418--12745528	291	3.8	295	76	10	830	37	12	14	36	1.83
12745896--12745934	19	2.1	19	85	9	53	43	5	7	43	1.55
12746623--12746842	91	2.4	90	85	2	289	35	18	9	36	1.84
12747018--12747087	27	2.5	28	81	6	88	64	1	1	32	1.11
12747409--12747484	30	2.6	29	79	6	89	38	2	0	59	1.12
12759371--12759427	28	2.0	28	80	12	64	57	7	0	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12759435--12759502	9	7.8	9	76	14	63	63	1	1	33	1.13
12759435--12759502	17	3.9	17	74	14	59	63	1	1	33	1.13
12759438--12759500	26	2.5	25	84	7	74	63	1	1	33	1.13
12760277--12760363	19	4.5	19	75	12	79	70	1	2	26	1.07
12760305--12760363	27	2.2	27	79	11	68	71	0	1	27	0.96
12760808--12760866	23	2.4	24	86	8	75	45	1	0	52	1.10
12763515--12763558	14	3.1	14	93	0	70	34	43	0	22	1.54
12763503--12763554	7	7.3	7	76	4	50	32	48	0	19	1.49
12763577--12763620	22	2.0	22	82	8	54	40	29	0	29	1.57
12764332--12764429	39	2.5	40	83	3	117	22	20	19	37	1.94
12770412--12771218	403	2.0	403	94	0	1411	25	19	26	27	1.99
12773174--12773310	69	2.0	69	82	2	168	16	21	22	39	1.92
12773259--12773364	53	2.0	53	88	0	158	21	21	17	38	1.93
12773477--12773745	69	3.9	69	81	1	288	16	23	24	36	1.94
12773495--12773745	138	1.8	138	84	0	340	16	22	24	37	1.94
12779627--12780332	364	1.9	365	91	0	1146	18	25	24	31	1.98
12786841--12787350	251	2.0	251	98	0	984	31	19	16	33	1.94
12800465--12800507	17	2.5	17	96	0	77	18	11	37	32	1.87
12803321--12803351	16	1.9	16	93	0	53	41	12	0	45	1.42
12805078--12805192	43	2.6	42	81	9	124	26	19	26	28	1.98
12809149--12809224	31	2.4	32	82	4	91	11	6	34	47	1.66
12810557--12810804	50	4.8	51	79	7	229	27	20	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12810884--12810933	25	2.0	26	96	4	93	52	8	20	20	1.71
12810889--12810945	25	2.3	25	90	0	87	50	7	17	24	1.70
12813562--12813668	51	2.1	51	91	5	173	23	19	22	34	1.96
12831701--12831751	23	2.2	23	89	0	75	43	17	7	31	1.78
12834529--12834576	24	2.0	24	87	4	69	33	14	12	39	1.84
12834613--12834679	9	7.4	9	86	0	98	40	22	11	25	1.88
12834762--12834790	6	4.8	6	100	0	58	17	0	17	65	1.27
12840946--12841012	10	7.0	9	74	17	55	34	0	1	64	1.03
12840946--12841011	29	2.3	29	84	5	89	34	0	1	63	1.04
12840977--12841020	21	2.2	19	88	8	61	40	0	0	59	0.98
12840950--12841020	19	3.6	21	79	11	71	35	0	1	63	1.03
12841863--12841914	24	2.2	24	89	0	77	55	9	1	32	1.43
12843826--12843878	24	2.2	24	89	0	79	54	9	1	33	1.43
12856601--12856659	23	2.6	23	77	0	64	11	23	23	40	1.88
12858292--12858324	16	2.1	16	94	0	57	57	0	0	42	0.98
12860397--12860460	23	2.9	23	76	6	78	12	3	39	45	1.58
12861980--12862309	85	3.9	86	85	3	409	23	30	19	26	1.98
12861980--12862292	43	7.3	43	86	2	409	23	30	19	26	1.98
12861980--12862309	128	2.6	127	85	4	439	23	30	19	26	1.98
12864135--12864188	19	2.9	18	83	10	65	59	0	1	38	1.08
12864565--12864800	9	25.7	9	70	19	125	32	1	18	47	1.58
12864565--12864800	16	12.8	18	72	16	125	32	1	18	47	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12864565--12864712	34	4.2	32	73	16	107	32	2	19	45	1.62
12864698--12864786	12	8.2	12	70	25	56	33	1	14	50	1.50
12864700--12864812	33	3.7	32	75	18	109	33	0	15	50	1.50
12864746--12864789	21	2.1	21	91	0	70	34	0	15	50	1.45
12866079--12866278	83	2.4	83	79	7	210	37	20	15	27	1.92
12867725--12867990	81	3.3	80	78	4	255	32	31	18	18	1.95
12867718--12868041	122	2.6	120	78	7	296	31	30	18	19	1.96
12867718--12868015	41	7.3	39	77	8	240	30	30	19	19	1.96
12868083--12868169	40	2.1	41	89	2	131	18	20	16	44	1.86
12868072--12868210	40	3.5	40	78	12	126	20	17	17	44	1.87
12868742--12868778	10	3.7	10	89	10	58	78	0	2	18	0.87
12869493--12869571	32	2.4	32	89	2	122	48	3	7	40	1.50
12869526--12869948	151	2.8	149	87	6	615	43	9	4	41	1.57
12870719--12870973	42	6.1	42	84	0	330	37	21	18	22	1.94
12870719--12870973	126	2.0	126	87	1	368	37	21	18	22	1.94
12871371--12871403	17	1.9	17	93	0	57	6	3	9	81	0.95
12871938--12872014	34	2.2	34	82	15	88	6	24	2	66	1.28
12883586--12883611	11	2.4	11	100	0	52	50	7	0	42	1.31
12884555--12885029	146	3.2	147	80	10	449	42	9	4	43	1.58
12884795--12884832	20	1.9	20	88	0	58	39	10	0	50	1.37
12884620--12885031	146	2.8	148	86	6	550	42	9	4	42	1.58
12886029--12886077	20	2.7	18	77	22	57	51	4	2	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12887893--12888020	25	5.1	25	73	12	84	28	21	23	25	1.99
12889702--12889748	19	2.4	18	80	19	51	10	14	2	72	1.21
12890838--12890892	26	2.1	26	89	0	83	18	21	23	36	1.95
12890986--12891128	28	5.1	28	97	0	259	21	26	24	27	1.99
12896007--12896061	7	7.9	7	100	0	110	41	0	0	58	0.98
12897998--12898045	23	2.0	23	84	8	60	20	16	8	54	1.68
12911467--12911504	17	2.2	17	90	0	58	39	5	28	26	1.78
12911707--12911803	48	2.0	48	97	0	185	46	11	14	27	1.79
12915692--12915807	58	2.0	58	94	0	205	37	11	17	34	1.85
12918289--12918427	37	3.5	39	74	6	129	32	21	17	28	1.96
12919251--12919319	4	17.2	4	75	19	56	1	24	2	71	1.09
12919245--12919317	22	3.3	21	83	11	76	1	26	2	69	1.09
12922939--12923080	68	2.1	68	97	0	266	36	17	7	38	1.77
12926562--12926592	16	1.9	16	93	0	53	58	16	6	19	1.59
12928051--12928286	96	2.4	97	87	2	323	37	3	17	41	1.67
12931646--12931726	30	2.7	28	75	18	81	44	3	8	43	1.52
12931851--12931890	21	1.9	21	84	0	53	5	12	45	37	1.64
12932129--12932171	18	2.4	18	92	0	68	44	6	27	20	1.77
12933983--12934042	11	5.5	10	81	13	57	46	1	30	21	1.61
12938469--12938997	120	4.4	120	94	1	893	43	0	3	51	1.26
12938585--12938738	18	8.9	18	66	18	76	42	0	2	54	1.19
12938469--12938983	237	2.2	237	93	1	868	43	0	3	51	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12938941--12938975	18	2.0	17	88	5	52	45	0	0	54	0.99
12941299--12941358	28	2.1	28	100	0	120	26	16	18	38	1.92
12949706--12949870	23	7.2	23	81	0	150	40	26	15	17	1.89
12949706--12949850	69	2.1	69	84	0	182	42	25	13	18	1.87
12949706--12949870	69	2.4	69	82	0	177	40	26	15	17	1.89
12952982--12953011	15	2.0	15	100	0	60	20	20	6	53	1.67
12961008--12961070	24	2.5	26	82	7	76	22	4	3	69	1.21
12960989--12961023	6	5.7	6	86	6	52	14	0	2	82	0.77
12960992--12961068	20	3.7	20	71	19	59	20	3	3	71	1.18
12964347--12964620	42	6.4	43	78	4	227	29	20	19	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126